Difference between revisions of "Team:IISER Pune/Software"

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<img src="https://static.igem.org/mediawiki/2015/6/60/IISER_PUNE_SoftwareGFP.png"  width="80%"></img>
 
<img src="https://static.igem.org/mediawiki/2015/6/60/IISER_PUNE_SoftwareGFP.png"  width="80%"></img>
  
<p> We wish to use this to characterize devices</p>
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<p>Aim : <br/>To characterize devices using microscopy data. <br/> As a quantitative detection method for pigment released by <a href="https://2015.igem.org/Team:IISER_Pune/Projects#Detection">detection module</a>.</p>
  
  

Revision as of 00:01, 21 November 2015


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Simulation Codes

Along the course of our we came across several scenarios to model .
We simulated variations of the Quorum sensing terminator and the fast robust oscillator which are described by sets of differential equations. To solve them we have used a common template for integration.

The python source code for the Terminator module modelling can be downloaded here.

Terminator module

Approach 3[Download] [View/Open]

Automated Quantification of GFP per cells using in-house ImageJ macros

Aim :
To characterize devices using microscopy data.
As a quantitative detection method for pigment released by detection module.