Difference between revisions of "Team:Aalto-Helsinki/Modeling micelle"
m |
m (added site navigation) |
||
| Line 4: | Line 4: | ||
<!-- Closing divs for ready wiki things, still one more to add?--> | <!-- Closing divs for ready wiki things, still one more to add?--> | ||
</p></div> | </p></div> | ||
| + | |||
| + | |||
| + | <style type="text/css"> | ||
| + | |||
| + | /* Styles for navigation inside a page */ | ||
| + | |||
| + | #sidenav { | ||
| + | float:left; | ||
| + | position: fixed; | ||
| + | left: 0; | ||
| + | top: 30%; | ||
| + | width: 10%; | ||
| + | z-index: 2; | ||
| + | } | ||
| + | |||
| + | #sidenav > li > a { | ||
| + | padding-top: 1px; | ||
| + | padding-bottom: 0px; | ||
| + | } | ||
| + | |||
| + | #sidenav > li > a > h3 { | ||
| + | margin-top:2px; | ||
| + | padding-top: 1px; | ||
| + | padding-bottom: 1px; | ||
| + | } | ||
| + | #sidenav > li > a > h4 { | ||
| + | margin-top:2px; | ||
| + | padding-top: 1px; | ||
| + | padding-bottom: 1px; | ||
| + | } | ||
| + | </style> | ||
| + | |||
| + | <ul id="sidenav" class="nav nav-stacked"><!-- nav-pills if we want rounded corners --> | ||
| + | <li><a href="#introduction"><h3>Introduction</h3></a></li> | ||
| + | <li><a href="#geometry"><h3>Geometrical<br>approach</h3></a></li> | ||
| + | <li><a href="#micellestructure"><h4>Micelle<br>structure</h4></a></li> | ||
| + | <li><a href="#adocar"><h4>Calculations<br>for Ado and Car</h4></a></li> | ||
| + | <li><a href="#gfp"><h4>Calculations<br>for Gfp</h4></a></li> | ||
| + | <li><a href="#discussion"><h3>Discussion</h3></a></li> | ||
| + | |||
| + | |||
| + | <!-- There was code for drilldown menu, saving it for if I need it later. Does it work? Not sure... --> | ||
| + | <!--<li><a href="#" data-toggle="collapse" data-target="#drilldown-1">menu item 3</a> | ||
| + | <div style="padding-left:0px;"> | ||
| + | <ul id="drilldown-1" class="nav nav-pills nav-stacked collapse"> | ||
| + | <li><a href="#">menu item 1-1</a></li> | ||
| + | <li><a href="#">menu item 1-2</a></li> | ||
| + | <li><a href="#">menu item 1-3</a></li> | ||
| + | </ul> | ||
| + | </div> | ||
| + | </li>--> | ||
| + | |||
| + | </ul> | ||
| + | |||
| + | |||
<div class="inner-container"> | <div class="inner-container"> | ||
| Line 9: | Line 64: | ||
<!-- Introduction --> | <!-- Introduction --> | ||
| − | <h1> Introduction </h1> | + | <h1 id="introduction"> Introduction </h1> |
<p>--Picture of the pathway here, CAR, ADO and butyraldehyde highlighted to clarify what we are talking about.--</p> | <p>--Picture of the pathway here, CAR, ADO and butyraldehyde highlighted to clarify what we are talking about.--</p> | ||
| Line 20: | Line 75: | ||
| − | <h1>Geometrical approach</h1> | + | <h1 id="geometry">Geometrical approach</h1> |
| − | <h2>Micelle structure</h2> | + | <h2 id="micellestructure">Micelle structure</h2> |
<!-- | <!-- | ||
| Line 35: | Line 90: | ||
<p>--picture of two amphiphilic proteins with ADO and CAR where all the above numbers are marked as well as total lengths--</p> | <p>--picture of two amphiphilic proteins with ADO and CAR where all the above numbers are marked as well as total lengths--</p> | ||
--> | --> | ||
| − | <h2>Calculations for Ado and Car</h2> | + | <h2 id="adocar">Calculations for Ado and Car</h2> |
<!--<p>We can estimate how many amphiphilic proteins we can theoretically fit in one micelle by calculating how big solid angles they take with attached enzymes. The easiest way to estimate the solid angles is to think the amphiphilic proteins linked with enzymes as cones. We can calculate the solid angle $\Omega$ for these by \[ \Omega = 2\pi \left( 1-\cos(\theta) \right), \] where $\theta$ is half of the apex angle. So for CAR we get \[ \Omega_{CAR} = 2\pi \left( 1-\cos\left( \arctan\left(\frac{3.5}{14.1}\right)\right) \right) \approx 0.185 \text{ rad} \] and for ADO \[ \Omega_{ADO} = 2\pi \left( 1-\cos\left( \arctan\left(\frac{2}{9.8}\right)\right) \right) \approx 0.127 \text{ rad}.\]</p> | <!--<p>We can estimate how many amphiphilic proteins we can theoretically fit in one micelle by calculating how big solid angles they take with attached enzymes. The easiest way to estimate the solid angles is to think the amphiphilic proteins linked with enzymes as cones. We can calculate the solid angle $\Omega$ for these by \[ \Omega = 2\pi \left( 1-\cos(\theta) \right), \] where $\theta$ is half of the apex angle. So for CAR we get \[ \Omega_{CAR} = 2\pi \left( 1-\cos\left( \arctan\left(\frac{3.5}{14.1}\right)\right) \right) \approx 0.185 \text{ rad} \] and for ADO \[ \Omega_{ADO} = 2\pi \left( 1-\cos\left( \arctan\left(\frac{2}{9.8}\right)\right) \right) \approx 0.127 \text{ rad}.\]</p> | ||
| Line 41: | Line 96: | ||
<p>--picture of this cone-like structure--</p>--> | <p>--picture of this cone-like structure--</p>--> | ||
| − | <h2>Calculations for Gfp</h2> | + | <h2 id="gfp">Calculations for Gfp</h2> |
| − | <h1>Discussion</h1> | + | <h1 id="discussion">Discussion</h1> |
<p>Here text about how the results obtained show normal micelle sizes so the formation should be ok geometrically.</p> | <p>Here text about how the results obtained show normal micelle sizes so the formation should be ok geometrically.</p> | ||
Revision as of 10:23, 3 August 2015
