Difference between revisions of "Team:Paris Saclay/Notebook/July/27"

Line 49: Line 49:
  
  
===Quantification===
+
===Digestion + Purification + Quantification===
 +
'' by Audrey''
  
 
Biobricks:
 
Biobricks:
* BBa_K1707003
+
* BBa_R0051
* BBa_K1399005
+
* BBa_K1707000
* BBa_B0015
+
* BBa_J23101
+
  
Agarose gel 1%
+
Digestion: as usual, with SpeI + PstI
Migration 110V
+
  
===Transformation===
+
Migration: Agarose gel 1%, migration 100V
''by Seong-Koo''
+
 
 +
===Plasmid extraction===
 +
'' by Pauline''
  
 
Biobricks:
 
Biobricks:
* BBa_K1707005
+
* BBa_K1707003 #4 et #5
* BBa_K1707006
+
 
* BBa_K1707007
+
With Plasmid DNA purification kit from Macherey-Nagel
 +
 
 +
===Digestion + Purification on agarose gel===
 +
'' by Pauline''
 +
 
 +
Biobricks:
 +
* BBa_K1707003 #4 and #5
 +
 
 +
Mix:
 +
* 10µL plasmid BBa_K1707003
 +
* 1µL XbaI
 +
* 1µL PstI
 +
* 2µL Buffer FastDigest
 +
* 6µL H2O
 +
 
 +
Purification on agarose gel 1%, migration 100V
 +
Cut with a scalpel
 +
Purification with the PCR Clean up kit from Macherey-Nagel
 +
 
 +
===New Culture===
 +
''by Johan''
 +
 
 +
Strains:
 +
* 1696
 +
* 1693
 +
* 1320
  
===Soil experiment===
+
in 150mL LB without any antibiotic
'' by Seong Koo''
+
  
Plates observation and count of CFU:
 
* Strain 1696:
 
** Dilution 1: 424 CFU
 
** Dilution 0.1: 75 CFU
 
** Dilution 0.01: 1 CFU
 
  
* Strain 1693:
 
** Dilution 1: 524 CFU
 
** Dilution 0.1: 35 CFU
 
** Dilution 0.01: 0 CFU
 
  
* Strain 1320:
 
** Dilution 1: 111 CFU
 
** Dilution 0.1: 13 CFU
 
** Dilution 0.01: 0 CFU
 
  
We take 1g of contaminated soil and treat it like yesterday to spread it on specific plates
 
Incubation ON, 37°C
 
  
  

Revision as of 08:47, 5 August 2015

Monday 27th July

Lab Work

New culture

by Seong Koo

Biobricks:

  • BBa_K1707005
  • BBa_K1707006
  • BBa_K1707007

Ligation

by Pauline and Coralie

  • BBa_K1707008
    • 2µL Tp 10x
    • 1µL Ligase
    • 11µL BBa_K1707003
    • 6µL BBa_J23101
  • BBa_K1707010
    • 1µL Tp 10x
    • 1µL Ligase
    • 12µL BBa_K1399005
    • 10µL BBa_B0015
    • 1µL H20
  • BBa_K1707009
    • 2µL Tp 10x
    • 2µL Ligase
    • 10µL BBa_S03518
    • 6µL BBa_R0051
  • BBa_K1707004
    • 3µL Tp 10x
    • 2µL Ligase
    • 8µL BBa_K1707003
    • 7µL BBa_R0051


Transformation

by Pauline and Coralie

Biobricks:

  • BBa_K1707008
  • BBa_K1707010
  • BBa_K1707009
  • BBa_K1707004


Digestion + Purification + Quantification

by Audrey

Biobricks:

  • BBa_R0051
  • BBa_K1707000

Digestion: as usual, with SpeI + PstI

Migration: Agarose gel 1%, migration 100V

Plasmid extraction

by Pauline

Biobricks:

  • BBa_K1707003 #4 et #5

With Plasmid DNA purification kit from Macherey-Nagel

Digestion + Purification on agarose gel

by Pauline

Biobricks:

  • BBa_K1707003 #4 and #5

Mix:

  • 10µL plasmid BBa_K1707003
  • 1µL XbaI
  • 1µL PstI
  • 2µL Buffer FastDigest
  • 6µL H2O

Purification on agarose gel 1%, migration 100V Cut with a scalpel Purification with the PCR Clean up kit from Macherey-Nagel

New Culture

by Johan

Strains:

  • 1696
  • 1693
  • 1320

in 150mL LB without any antibiotic




Member present:

  • Instructors: Alice
  • Students: Coralie, Audrey, Pauline, Johan and Seong-Koo

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