Difference between revisions of "Team:IONIS Paris/Notebook"
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Revision as of 09:13, 11 August 2015
Amplification of pDusk, pDawn, pSB1C3, VVD, pUC19 into E.coli DH5 alpha
Plate preparation
Aim: preparation of selective LB agar plate
Add 50 ml of LB agar into a Falcon tube (50ml) + 50 µl antibiotic
For 25 ml / plate (2 plates)
Plasmid | Antibiotic | Number of plate | Remarks |
---|---|---|---|
pDusk | |||
Kanamycin | 50 µl of transformed cells | ||
100 µl of transformed cells | |||
50 µl of competent cells (neg control) | |||
pDawn | |||
Kanamycin | 50 µl of transformed cells | ||
100 µl of transformed cells | |||
50 µl of competent cells (neg control) | |||
pSB1C3 | |||
Chloramphenicol | 50 µl of transformed cells | ||
100 µl of transformed cells | |||
50 µl of competent cells (neg control) | |||
VVD | |||
Amplicilin | 50 µl of transformed cells | ||
100 µl of transformed cells | |||
50 µl of competent cells (neg control) | |||
pUC19 | Amplicilin | 50 µl of transformed cells |
Summary:
6 plates with Kanamycin
3 plates with Chloramphenicol
4 plates with Ampicillin
Antibiotics concentration:
Ampicillin: 50 µg.ml-1 diluted 1/1000
Chloramphenicol: 25 µg.ml-1 diluted 1/1000
Kanamycin: 50 µg.ml-1 diluted 1/1000
Cell transformation
E.coli DH5 alpha (NEB5 alpha competent coli)
Stock: 6 tubes 0.20 ml / tube; 50 pg.µl-1
Aliquot of 50 µl of competent E.coli / transformation
Tube n° | Reagent added | Volume (µl) | Tube n° | Reagent added | Volume (µl) | ||
---|---|---|---|---|---|---|---|
pDusk | |
pSB1C3 | |
||||
pDawn | |
(Amp control) | |
||||
VVD | |
(Kan control) | |
||||
pUC19 | |
(Cam control) | |
Incubation on ice, 30 min
Heat shock exactly 42°C, 30 seconds. Do not mix
Keep on ice for 5 min, do not mix
400 µl of LB in sterile condition without antibiotic, pipette up and down gently
Incubation 37°C, 120 rpm, 1 hour
Centrifuge, 4000 rpm, 5 min
Remove and discard 300 µl of supernatant; resuspend gently using a pipette the remaining 150 µl
Plate bacteria following the table about plate preparation
Incubate at 37°C, O/N
Expected results:
No colonies into the 3 control plates
Many colonies into all the other plates;
Colonies from pSB1C3 transformation should exhibit red color
30 March 15
Preparation of media
Aim: prepare media for bacteria culture
LB Broth | LB Agar |
---|---|
2.5g tryptone | 2.5g tryptone |
2.5g NaCl | 2.5g NaCl |
1.25g yeast extract | 1.25g yeast extract |
5.0g agar |
Qsp 250 ml distilled water
2 bottles of LB broth and 2 bottles of LB agar (+magnetic stirrer)
Auctoclave 121°C
28 March 15