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Modeling Script

Model input

A short description, the input parameters and output data are explained for the four submodels below:

Linker Simulation (Distance).

This model calculates the effect of the linker on the distance between the intracellular domains. It's output file consists of a list of numbers. Each number represents the distance between the intracellular domains that was calculated in one iteration. The input parameters and used values to obtain our results are shown below:

• 1
• 1
• 1

Linker Simulation (BRET/FRET).

text for model 2

Total System Simulation.

text for model 3

Aptamer Binding Simulation.

text for model 4