Team:MIT/ModelingEColi
Project
Dynamic Flux Balance Analysis
C. Hutchinsonii Model Development
E. Coli Model Development
Coculture Simulations and Conclusions
C. Hutchinsonii Model Development
E. Coli Model Development
Coculture Simulations and Conclusions
E. coli Model Development
Parameters for Growing at 30 C
Because we ran our Co-Culture Experiments at 30 C, we had to fit parameters for substrate and xylose uptake at 30 C, since only values at 37 C are reported in the literature
Biodiesel Model
We added reactions for biodiesel production to the iJO1366 whole-genome FBA model using COBRA functions. In order to produce positive fluxes through these non-native reactions, simulating constitutive expression, we used Proportional Flux Forcing (PFF) .
