Team:ATOMS-Turkiye/Project/Modeling

• Tour
• Project
• Results
• P&P
• Team
• Extras

• Problems
• Ulcer
• Cancer Switch
• Modeling
• Safety
• Future Plan

• ATOMs
• Attributions
• Collaboration

• Notebook
• Protocols
• Achievements
• Official Part Page
• Interlab Study

• Virtual Hospital
• Video
• SynBio Day
• Outreach
• Street interview
• Ethics

Team ATOMS-Turkiye

atoms2015@googlegroups.com

MODELING

Table 1: Parameters for Lac Operon System Modelling (Simulating Genetic Systems with SimBiology)

Table 2: Parameters for Lsr Operon System (Dr. William E. Bentley. A MATHEMATICAL MODEL TO STUDY THE ROLE OF THE LSR INTERGENIC REGION IN MEDIATION OF AUTOINDUCER-2 QUORUM SENSING IN ESCHERICHIA COLI)

Table 1: Table 3: TEV Protease enzyme kinetics

References
[1]. Nallamsetty, S., Kapust, R., Tözsér, J., Cherry, S., Tropea, J., Copeland, T., & Waugh, D. (n.d.). Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro. Protein Expression and Purification, 108-115
[2]. Simulating Genetic Systems with SimBiology [3]. Dr. William E. Bentley. A MATHEMATICAL MODEL TO STUDY THE ROLE OF THE LSR INTERGENIC REGION IN MEDIATION OF AUTOINDUCER-2 QUORUM SENSING IN ESCHERICHIA COLI
[4]. Production of ammonium by Helicobacter pylori mediates occludin processing and disruption of tight junctions in Caco-2 cells
[5]. Anderson, J., Huang, J., Wreden, C., Sweeney, E., Goers, J., Remington, S., & Guillemin, K. (2015). Chemorepulsion from the Quorum Signal Autoinducer-2 Promotes Helicobacter pylori Biofilm Dispersal. MBio.