Our BioBricks

Composite Parts

tfa (tail fibre assembly) gene circuit (BBa_K1846001)

This part provides the gene sequence for tfa (tail fibre assembly) protein, together with a TetR repressible promoter (BBa_R0040), ribosome binding site (BBa_B0034) and an rrNB T1 terminator (BBa_B0010).

The tfa (tail fibre assembly) protein of bacteriophage lambda assists in the assembly of the stf (short tail fibre) protein into a functional short tail fibre [1],[2]. Tfa gene displays a high level of homology (~40%) with the gp38 of bacteriophage T4 [2],[3],[4].

This tfa circuit was synthesised removing the illegal restriction sites to make the sequence BioBrick-compatible. The sequence was cloned into a pSB1C3 and the success of the cloning procedure was confirmed by restriction with EcoRI and SpeI restriction enzymes and followed by agarose gel electrophoresis (Figure 1). The construct was also confirmed by sequencing. This BioBrick was registered as part BBa_K1846001.

TetR circuit (BBa_K1846003)

This is a constitutive part for the production of the tetracyline repressor TetR, using a constitutive, medium-copy chloramphenicol promoter (BBa_I14033), ribosome binding sequence (BBa_B0031) and double terminator (rrnb T1 terminator followed by a T7Te terminator, BBa_B0010).

TetR generator cassette (BBa_P0140) and P(Cat) promoter (BBa_I14033) were obtained from 2015 iGEM distribution kit and cloned into a single pSB1C3 vector. Correct cloning of the parts into the pSB1C3 shipping vector was confirmed by agarose gel electrophoresis (Figure 2) and Sanger sequencing. This BioBrick has been registered as part BBa_K1846003. File:BBKiGEM-Pcat-TetR2.jpg

TetR-regulated tfa (tail fibre assembly) circuit (BBa_K1846007)

A circuit controlling the production of the tail fibre assembly (tfa) protein of bacteriophage lambda to prevent toxicity to the cell. The tfa gene operates under a TetR repressible promoter, while a second circuit (BBa_K1846003) produces TetR (tetracycline repressor) under control of a P(Cat) promoter. With the production of the tfa protein under control of a Tet-repressible promoter, the tfa coding sequence will not be expressed due to P(TetR). However, on addition of anhydrous tetracycline (aTc), TetR will preferably bind to aTc molecule, alleviating repression of P(TetR) and allowing the initiation of transcription. The correct cloning of this BioBrick was confirmed through Sanger sequencing and agarose gel electrophoresis.

We characterised this construct by analysing the soluble protein fraction of the cell lysate (Figures 3 and 4). Under the TetR regulation, tea gene is expressed under a tight control, and can be visualised on the gel (tfa protein = 194 aa, MW: 21602.2 Da), (Figure 3, samples 7, 8, 9 and 11, 12 and 13; Figure 4, samples 4, 5 and 6). tea gene circuit on its own does not appear to produce tfa protein bands (Figure 3, samples 1, 2 and 3). Although the literature suggests that the protein is soluble even with high expression [1], we hypothesise the lack of bands in these samples is due to the protein being highly acidic, and thus toxic to the cell. It may be that due to the toxicity the cells that express less of the protein are selected for in these experimental conditions. Under the regulation of TetR, even when induced, the expression of the tea gene is considerably lower than when unregulated and hence, we hypothesise, a considerable amount of soluble material can be recovered. The TetR repressor contains an LVA tag for rapid degradation and hence in the uninduced samples 7 and 11 in Figure 3, and sample 4 in Figure 4, tfa protein bands can still be observed.

cI-Cro circuit (BBa_K1846005)

We have created a regulatory circuit to control the lysogenic and lytic phases of bacteriophage lambda. The cI-Cro construct contains a circuit for the production - via a constitutive promoter - of the cI repressor protein (also known as the Lambda Repressor), which is responsible for keeping bacteriophage lambda in the lysogenic cycle through the cooperative binding of two repressor dimers to the DNA, repressing the Cro gene. The circuit uses a T7 promoter to drive the expression of the Cro gene in the opposite direction to the cI gene, essentially silensing the expression of the cI gene. The strength of the promoter used means that in the presence of T7 DNA polymerase, production of the Cro repressor will incapacitate production of the cI repressor and thus enables the switch from lysogenic cycle to the lytic cycle. The correct cloning of this BioBrick was confirmed through Sanger sequencing and agarose gel electrophoresis (see results). This BioBrick has been registered as part BBa_K1846005.

We characterised this construct by analysing the soluble protein fraction of the cell lysate (Figure 3). As cI protein is produced constitutively in our circuit, we expected to see a cI protein band at ca 26 kDa (cI = 237 aa, MW: 26211.8 Da). Our control E.coli 10β cells containing the cI/cro construct are showing the expected bands at ca 26 kDa, Figure 3, samples 7, 8 and 9. We attribute lack of cI bands in our T7 Express cell lysate due to T7 RNAP leakage, which would silence the cI expression. This hypothesis requires further investigation, however our preliminary results suggest the circuit could be functional.

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[1] Hashemolhosseini, S., Stierhof, Y. D., Hindennach, I., & Henning, U. (1996). Characterization of the helper proteins for the assembly of tail fibers of coliphages T4 and λ. Journal of Bacteriology, 178(21), 6258–6265.

[2] Montag, D., Schwarz, H., & Henning, U. (1989). A component of the side tail fiber of E. coli bacteriophage λ can functionally replace the receptor-recognizing part of a long tail fiber protein of the unrelated bacteriophage T4. Journal of Bacteriology, 171(8), 4378–4384.

[3] Hendrix, R. W., & Duda, R. L. (1992). Bacteriophage lambda PaPa: not the mother of all lambda phages. Science (New York, N.Y.), 258(5085), 1145–1148. doi:10.1126/science.1439823