Difference between revisions of "Team:Exeter/Modelling parameterscan"

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       --><title>Parameter Scanning</title><meta name="generator" content="MATLAB 8.5"><link rel="schema.DC" href="http://purl.org/dc/elements/1.1/"><meta name="DC.date" content="2015-09-13"><meta name="DC.source" content="parameterscan_publish.m"><style type="text/css">
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       --><title>Parameter Scanning</title><meta name="generator" content="MATLAB 8.5"><link rel="schema.DC" href="http://purl.org/dc/elements/1.1/"><meta name="DC.date" content="2015-09-19"><meta name="DC.source" content="parameterscantemps_publish.m"><style type="text/css">
 
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   </style></head><body><div class="content"><h1>Parameter Scanning</h1><p>A breif section of code that will call our simulation function and scan over a range for a given parameter. See <a href="https://2015.igem.org/Team:Exeter/Modelling_Parameter">https://2015.igem.org/Team:Exeter/Modelling_Parameter</a> for more information.</p><pre class="codeinput"><span class="keyword">function</span> parameterscan()
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   </style></head><body><div class="content"><h1>Parameter Scanning</h1><p>A brief section of code that will call our simulation function and scan over a range for a given parameter. See <a href="https://2015.igem.org/Team:Exeter/Modelling_Parameter">https://2015.igem.org/Team:Exeter/Modelling_Parameter</a> for more information.</p><pre class="codeinput"><span class="keyword">function</span> parameterscan()
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     GFPovertime=[];
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     GFPovertemps=[];
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     T=277:0.5:313; <span class="comment">%4 degrees to 40</span>
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     T=273:5:343; <span class="comment">%0 degrees to 69</span>
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     <span class="keyword">for</span> i=1:size(T,2);
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    r=[20 100 200 400];
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        GFPovertime(i)=BM_03_08_extralinefix(2,2,5000,T(i)+277);
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    t=[20];
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    Doubleparameterscan=[];
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     <span class="keyword">for</span> j=1:size(r,2);
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        <span class="keyword">for</span> i=1:size(T,2);
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            Doubleparameterscan(i,j)=BM_07_09_insilicobinding(t(1),r(j),1000,T(i));
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    <span class="comment">%        xtemps[i]=char(T(i)-273);</span>
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        <span class="keyword">end</span>
 
     <span class="keyword">end</span>
 
     <span class="keyword">end</span>
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    figure()
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     plot(T,GFPovertime, <span class="string">'k'</span>)
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     hold <span class="string">on</span>
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     savefile= <span class="string">'Doubleparameterscan'</span>;
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    xlabel(<span class="string">'Temperature (K)'</span>)
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     save(savefile, <span class="string">'Doubleparameterscan'</span>)
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     ylabel(<span class="string">'GFPcount'</span>)
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     Doubleparameterscan; <span class="comment">%Use this saved array to plot a Surface</span>
 
<span class="keyword">end</span>
 
<span class="keyword">end</span>
 
</pre><p class="footer"><br><a href="http://www.mathworks.com/products/matlab/">Published with MATLAB&reg; R2015a</a><br></p></div><!--
 
</pre><p class="footer"><br><a href="http://www.mathworks.com/products/matlab/">Published with MATLAB&reg; R2015a</a><br></p></div><!--
 
##### SOURCE BEGIN #####
 
##### SOURCE BEGIN #####
 
%% Parameter Scanning
 
%% Parameter Scanning
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% A breif section of code that will call our simulation function and scan
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% A brief section of code that will call our simulation function and scan
 
% over a range for a given parameter.  
 
% over a range for a given parameter.  
 
% See <https://2015.igem.org/Team:Exeter/Modelling_Parameter> for more information.
 
% See <https://2015.igem.org/Team:Exeter/Modelling_Parameter> for more information.
  
 
function parameterscan()
 
function parameterscan()
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     GFPovertime=[];
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     GFPovertemps=[];
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     T=277:0.5:313; %4 degrees to 40
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     T=273:5:343; %0 degrees to 69
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     for i=1:size(T,2);
+
    r=[20 100 200 400];
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        GFPovertime(i)=BM_03_08_extralinefix(2,2,5000,T(i)+277);
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    t=[20];
 +
    Doubleparameterscan=[];
 +
   
 +
     for j=1:size(r,2);
 +
        for i=1:size(T,2);
 +
            Doubleparameterscan(i,j)=BM_07_09_insilicobinding(t(1),r(j),1000,T(i));  
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    %        xtemps[i]=char(T(i)-273);
 +
        end
 
     end
 
     end
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     figure()
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     plot(T,GFPovertime, 'k')
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     hold on
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     savefile= 'Doubleparameterscan';
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    xlabel('Temperature (K)')
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     save(savefile, 'Doubleparameterscan')
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     ylabel('GFPcount')
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     Doubleparameterscan; %Use this saved array to plot a Surface
 
end
 
end
  
 
##### SOURCE END #####
 
##### SOURCE END #####
 
--></body></html>
 
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Revision as of 03:34, 19 September 2015

Parameter Scanning

Parameter Scanning

A brief section of code that will call our simulation function and scan over a range for a given parameter. See https://2015.igem.org/Team:Exeter/Modelling_Parameter for more information.

function parameterscan()
    GFPovertemps=[];
    T=273:5:343; %0 degrees to 69
    r=[20 100 200 400];
    t=[20];
    Doubleparameterscan=[];

    for j=1:size(r,2);
        for i=1:size(T,2);
            Doubleparameterscan(i,j)=BM_07_09_insilicobinding(t(1),r(j),1000,T(i));
    %         xtemps[i]=char(T(i)-273);
        end
    end


    savefile= 'Doubleparameterscan';
    save(savefile, 'Doubleparameterscan')
    Doubleparameterscan; %Use this saved array to plot a Surface
end


Published with MATLAB® R2015a