Difference between revisions of "Team:Korea U Seoul/Notebook"

(Prototype team page)
 
 
Line 1: Line 1:
−
{{Korea_U_Seoul}}
 
−
<html>
 
−
 
−
<h2>Notebook</h2>
 
−
 
−
<p> Document the dates you worked on your project.</p>
 
−
 
−
<h5>What should this page have?</h5>
 
−
<ul>
 
−
<li>Chronological notes of what your team is doing.</li>
 
−
<li> Brief descriptions of daily important events.</li>
 
−
<li>Pictures of your progress. </li>
 
−
<li>Mention who participated in what task.</li>
 
−
</ul>
 
−
 
−
 
−
<h4>Inspiration</h4>
 
−
<p>You can see what others teams have done to organize their notes:</p>
 
−
 
−
<ul>
 
−
<li><a href="https://2014.igem.org/Team:ATOMS-Turkiye/Notebook">2014 ATOMS-Turkiye</a></li>
 
−
<li><a href="https://2014.igem.org/Team:Tec-Monterrey/ITESM14_project.html#tab_notebook">2014 Tec Monterrey</a></li>
 
−
<li><a href="https://2014.igem.org/Team:Kyoto/Notebook/Magnetosome_Formation#title">2014 Kyoto</a></li>
 
−
<li><a href="https://2014.igem.org/Team:Cornell/notebook">2014 Cornell</a></li>
 
−
</ul>
 
  
 +
<div>{{:Team:Korea_U_Seoul/template/banner}}</div>
 +
<div style="width:100%;>
 +
{{:Team:Korea_U_Seoul/Notebook/content}}
 
</div>
 
</div>
−
</html>
+
<div>{{:Team:Korea_U_Seoul/sponsors}}</div>

Latest revision as of 19:00, 16 September 2015

January

1st meeting


- Study software projects of previous iGEM teams


2nd meeting


- Recruit more team members

- Start to run three sub-teams: data processing, web development, and wetlab experiment


3rd meeting


- Allocate roles of each team member

- Make meeting schedules and plans


4th meeting


- Study about iGEM and synthetic biology for newcomers

- Study previous gold medal projects


February ~ March

5th meeting


- Study the program “eQuilibrator”

- Start to learn computational tools to deal with synthetic design of biochemical pathways and networks


6th meeting


- Download KEGG database

- Study about the concept of RPair of KEGG

- Design our team logo


April

7th Meeting


- Start to study visualization tools

- Make funding plan for the project

- Plan for a science day event for Human Practices


May

8th Meeting


- Continue to try to visualize toy network model

- Continue to construct networks of whole reactions and compounds

- Study about vector design

- Prepare to apply for CCP in Korea University


9th Meeting


- Analyze code of vector design from the project of SYSU-Software 2014

- Continue to construct database and develop web application

- Brainstorm topics for an experiment: Pine wilt disease, Allergen production, Luciferase for Art and Design, Photo induction >> Litography : team experiment


10th Meeting


- Continue to analyze code of vector design from the project of SYSU-Software 2014

- Continue to construct database and develop web application

- Search example pathways for program testing


11th Meeting


- Continue to construct database and develop web application

- Share the example pathway each member found

- Study how to write in JSON format and use it


June

12th Meeting


- Contact school departments and bio-corporations for funding

- Continue to construct database and develop web application


13th Meeting


- Study how to use D3.js

- Convert network data into JSON

- Study how to apply eQuilibrator to the project


July

14th Meeting


- Convert data into JSON

- Apply eQuilibrator data to our toy model

- Make brochure for funding

- Study the Judging Handbook


15th Meeting


- Create and share a ‘to do list’ of each sub-team, and set priority among those items

- Apply and check example pathways

- Look for the way to apply KEGG Atlas information to our project

- Determine which information of reactions and compounds add to our program

- Study the Judging Handbook

- Write project description!


16th Meeting


- Read articles to set pathway criteria

- Add E. coli K-12 gene data

- Write code to apply thermodynamic data

- Modify graph on web and design


17th Meeting


- Study and determine which cofactors would be added among four types of criteria

- Apply the code that calculate Gibbs energy to the toy model

- Modify input boxes of web application

- Submit CCP mid-report

- Choose a subtitle for web application


18st Network Meeting


- Modify python scripts

- Study and determine which cofactors would be added among four types of criteria

- Add polarity of reactions to the database


19nd Meeting


- Calculate the differences of ATP, NADP, NADPH, CO2 of each reactions

- Add thermodynamic data to our software

- Modify web design of the software

- Register for Giant Jamboree!


August

20rd Meeting


- Write a conti for our program tutorial

- Change KEGG IDs into chemical names


21st Meeting


- Make the tutorial

- Add glycan data to the database


22nd Meeting


- Design the banner for the Giant Jamboree

- Send mails asking a collaboration to wetlab teams

- Plan for a survey and a lecture for Human Practices


23rd Meeting


- Try to add up to two-degree compounds to each node

- Modify the web application


September

24rd Meeting


- Start to write wiki contents

- Start to prepare for the presentation

- Study API, GitHub, et cetera.