Team:Bielefeld-CeBiTec/Software/SourceCode
Analysis.java
TakePhoto.java
HeavyMetals.java
Instructions.java
MainActivity.java
ContaminationList.java
HeavyMetalsFragment.java
HeavyMetalsDetailsActivity.java
HeavyMetalsDetailsFragment.java
<head>
activity_results.xml
simple_list_item.xml
activity_analysis.xml
activity_take_photo.xml
activity_instructions.xml
fragment_heavy_metals.xml
activity_contamination_list.xml
activity_heavy_metals_details.xml
fragment_heavy_metals_details.xml
<script> $("#sourcecode").addClass("navbar-active"); </script> <title>Analysis.java</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <style type="text/css"> .ln { color: rgb(0,0,0); font-weight: normal; font-style: normal; } .s0 { color: rgb(0,0,128); font-weight: bold; } .s1 { } .s2 { color: rgb(128,128,128); font-style: italic; } </style> </head> <BODY BGCOLOR="#ffffff">
Analysis.java |
<span class="s0">package </span><span class="s1">de.anna.cellfreestick;
</span><span class="s0">import </span><span class="s1">android.support.v7.app.ActionBarActivity;
</span><span class="s0">import </span><span class="s1">android.os.Bundle;
</span><span class="s0">import </span><span class="s1">android.view.Menu;
</span><span class="s0">import </span><span class="s1">android.view.MenuItem;
</span><span class="s0">public class </span><span class="s1">Analysis </span><span class="s0">extends </span><span class="s1">ActionBarActivity {
@Override
</span><span class="s0">protected void </span><span class="s1">onCreate(Bundle savedInstanceState) {
</span><span class="s0">super</span><span class="s1">.onCreate(savedInstanceState);
setContentView(R.layout.activity_analysis);
}
@Override
</span><span class="s0">public boolean </span><span class="s1">onCreateOptionsMenu(Menu menu) {
</span><span class="s2">// Inflate the menu; this adds items to the action bar if it is present.</span><span class="s1">
getMenuInflater().inflate(R.menu.menu_analysis, menu);
</span><span class="s0">return true</span><span class="s1">;
}
@Override
</span><span class="s0">public boolean </span><span class="s1">onOptionsItemSelected(MenuItem item) {
</span><span class="s2">// Handle action bar item clicks here. The action bar will</span><span class="s1">
</span><span class="s2">// automatically handle clicks on the Home/Up button, so long</span><span class="s1">
</span><span class="s2">// as you specify a parent activity in AndroidManifest.xml.</span><span class="s1">
</span><span class="s0">int </span><span class="s1">id = item.getItemId();
</span><span class="s2">//noinspection SimplifiableIfStatement</span><span class="s1">
</span><span class="s0">if </span><span class="s1">(id == R.id.action_settings) {
</span><span class="s0">return true</span><span class="s1">;
}
</span><span class="s0">return super</span><span class="s1">.onOptionsItemSelected(item);
}
}
</span>
</body>
<head> <title>ApplicationTest.java</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <style type="text/css"> .ln { color: rgb(0,0,0); font-weight: normal; font-style: normal; } .s0 { color: rgb(0,0,128); font-weight: bold; } .s1 { } .s2 { color: rgb(128,128,128); font-style: italic; } .s3 { color: rgb(128,128,128); font-style: italic; } </style> </head> <BODY BGCOLOR="#ffffff">
ApplicationTest.java |
<span class="s0">package </span><span class="s1">de.anna.cellfreestick;
</span><span class="s0">import </span><span class="s1">android.app.Application;
</span><span class="s0">import </span><span class="s1">android.test.ApplicationTestCase;
</span><span class="s2">/**
* </span><span class="s3"><a href="http://d.android.com/tools/testing/testing_android.html"></span><span class="s2">Testing Fundamentals</span><span class="s3"></a></span><span class="s2">
*/</span><span class="s1">
</span><span class="s0">public class </span><span class="s1">ApplicationTest </span><span class="s0">extends </span><span class="s1">ApplicationTestCase<Application> {
</span><span class="s0">public </span><span class="s1">ApplicationTest() {
</span><span class="s0">super</span><span class="s1">(Application.</span><span class="s0">class</span><span class="s1">);
}
}</span>
</body>
<head> <title>ContaminationList.java</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <style type="text/css"> .ln { color: rgb(0,0,0); font-weight: normal; font-style: normal; } .s0 { color: rgb(0,0,128); font-weight: bold; } .s1 { } .s2 { color: rgb(128,128,128); font-style: italic; } .s3 { color: rgb(0,128,0); font-weight: bold; } .s4 { color: rgb(0,0,255); } </style> </head> <BODY BGCOLOR="#ffffff">
ContaminationList.java |
<span class="s0">package </span><span class="s1">de.anna.cellfreestick;
</span><span class="s0">import </span><span class="s1">android.content.DialogInterface;
</span><span class="s0">import </span><span class="s1">android.content.Intent;
</span><span class="s0">import </span><span class="s1">android.support.v7.app.ActionBarActivity;
</span><span class="s0">import </span><span class="s1">android.os.Bundle;
</span><span class="s0">import </span><span class="s1">android.view.Menu;
</span><span class="s0">import </span><span class="s1">android.view.MenuItem;
</span><span class="s0">import </span><span class="s1">android.view.View;
</span><span class="s0">import </span><span class="s1">android.widget.Button;
</span><span class="s0">import </span><span class="s1">android.widget.TableLayout;
</span><span class="s0">import </span><span class="s1">android.widget.TextView;
</span><span class="s0">import </span><span class="s1">java.util.Arrays;
</span><span class="s0">public class </span><span class="s1">ContaminationList </span><span class="s0">extends </span><span class="s1">ActionBarActivity </span><span class="s0">implements </span><span class="s1">View.OnClickListener {
</span><span class="s2">//declaration of variables</span><span class="s1">
</span><span class="s0">private int </span><span class="s1">[] medianpos;
</span><span class="s0">private int </span><span class="s1">[] medianneg;
</span><span class="s0">private boolean </span><span class="s1">[] contamination;
</span><span class="s0">private </span><span class="s1">TextView textViewException;
</span><span class="s0">private </span><span class="s1">TableLayout contaminationTable;
</span><span class="s0">private </span><span class="s1">Button details;
</span><span class="s0">private </span><span class="s1">Button about;
@Override
</span><span class="s0">protected void </span><span class="s1">onCreate(Bundle savedInstanceState) {
</span><span class="s0">super</span><span class="s1">.onCreate(savedInstanceState);
setContentView(R.layout.activity_contamination_list);
</span><span class="s2">//find elements from View</span><span class="s1">
details =(Button) findViewById(R.id.buttonDetails);
details.setOnClickListener(</span><span class="s0">this</span><span class="s1">);
about=(Button) findViewById(R.id.buttonAbout);
about.setOnClickListener(</span><span class="s0">this</span><span class="s1">);
textViewException =(TextView) findViewById(R.id.textViewException);
contaminationTable = (TableLayout) findViewById(R.id.contaminationTable);
</span><span class="s2">//store values from intent in variables for further calculations</span><span class="s1">
Intent intent = getIntent();
</span><span class="s0">if</span><span class="s1">(intent!=</span><span class="s0">null</span><span class="s1">){
medianpos= intent.getIntArrayExtra(</span><span class="s3">"Keypos"</span><span class="s1">);
medianneg= intent.getIntArrayExtra(</span><span class="s3">"Keyneg"</span><span class="s1">);
}
</span><span class="s2">//call method for the calculation of contamination</span><span class="s1">
calculateContamination();
</span><span class="s2">//if contamination[false] remove corresponding heavy metal from table view</span><span class="s1">
</span><span class="s0">for</span><span class="s1">(</span><span class="s0">int </span><span class="s1">i=</span><span class="s4">6</span><span class="s1">; i>=</span><span class="s4">0</span><span class="s1">; i--) {
</span><span class="s0">if</span><span class="s1">(!contamination[i]) contaminationTable.removeViewAt(i);
}
}
</span><span class="s2">//method for the calculation of contamination</span><span class="s1">
</span><span class="s0">private void </span><span class="s1">calculateContamination() {
contamination = </span><span class="s0">new boolean</span><span class="s1">[</span><span class="s4">7</span><span class="s1">];
</span><span class="s2">// check if positive control has a reasonable value, if not throw exception</span><span class="s1">
</span><span class="s0">if</span><span class="s1">(medianneg[</span><span class="s4">0</span><span class="s1">]>=</span><span class="s4">20</span><span class="s1">){
</span><span class="s2">/* calculation of correction factor because of hazardous metals in the sample
that could possibly lead to decrease in fluorescence
*/</span><span class="s1">
</span><span class="s0">float </span><span class="s1">corr = medianneg[</span><span class="s4">0</span><span class="s1">]/medianpos[</span><span class="s4">0</span><span class="s1">]; </span><span class="s2">//relative decrease of fluorescence in positive controls</span><span class="s1">
</span><span class="s2">/*does the test reach more than ten percent of the positive control?
if that is the case the value corresponding to the certain heavy metal is set to 'true' in
contamination[] otherwise it is set to 'false'
*/</span><span class="s1">
</span><span class="s0">for</span><span class="s1">(</span><span class="s0">int </span><span class="s1">i=</span><span class="s4">0</span><span class="s1">; i<</span><span class="s4">7</span><span class="s1">; i++){
</span><span class="s0">float </span><span class="s1">diff = corr*medianpos[i+</span><span class="s4">1</span><span class="s1">]-medianneg[i+</span><span class="s4">1</span><span class="s1">];
</span><span class="s0">float </span><span class="s1">cont = diff/medianneg[</span><span class="s4">0</span><span class="s1">];
</span><span class="s0">if</span><span class="s1">(cont<</span><span class="s4">0.1 </span><span class="s1">|| diff<</span><span class="s4">0</span><span class="s1">){
contamination[i]=</span><span class="s0">false</span><span class="s1">;
}</span><span class="s0">else</span><span class="s1">{
contamination[i]=</span><span class="s0">true</span><span class="s1">;
}
}
textViewException.setText(</span><span class="s3">"Your water is contaminated with:"</span><span class="s1">);
}</span><span class="s0">else</span><span class="s1">{
textViewException.setText(</span><span class="s3">"The test is not working properly, sorry!"</span><span class="s1">);
</span><span class="s2">//Supress showing of heavy metals in table view</span><span class="s1">
</span><span class="s0">for</span><span class="s1">(</span><span class="s0">int </span><span class="s1">i=</span><span class="s4">7</span><span class="s1">; i<</span><span class="s4">7</span><span class="s1">; i--) {
contaminationTable.removeViewAt(i);
}
}
}
@Override
</span><span class="s0">public boolean </span><span class="s1">onCreateOptionsMenu(Menu menu) {
</span><span class="s2">// Inflate the menu; this adds items to the action bar if it is present.</span><span class="s1">
getMenuInflater().inflate(R.menu.menu_contamination_list, menu);
</span><span class="s0">return true</span><span class="s1">;
}
@Override
</span><span class="s0">public boolean </span><span class="s1">onOptionsItemSelected(MenuItem item) {
</span><span class="s2">// Handle action bar item clicks here. The action bar will</span><span class="s1">
</span><span class="s2">// automatically handle clicks on the Home/Up button, so long</span><span class="s1">
</span><span class="s2">// as you specify a parent activity in AndroidManifest.xml.</span><span class="s1">
</span><span class="s0">int </span><span class="s1">id = item.getItemId();
</span><span class="s2">//noinspection SimplifiableIfStatement</span><span class="s1">
</span><span class="s0">if </span><span class="s1">(id == R.id.action_settings) {
</span><span class="s0">return true</span><span class="s1">;
}
</span><span class="s0">return super</span><span class="s1">.onOptionsItemSelected(item);
}
@Override
</span><span class="s0">public void </span><span class="s1">onClick(View v) {
</span><span class="s0">if</span><span class="s1">(v.getId() == R.id.buttonDetails){
Intent intent = </span><span class="s0">new </span><span class="s1">Intent(ContaminationList.</span><span class="s0">this</span><span class="s1">, <a href="Results.java.html">Results</a>.</span><span class="s0">class</span><span class="s1">);
startActivity(intent);
}</span><span class="s0">else if</span><span class="s1">(v.getId() == R.id.buttonAbout){
Intent intent = </span><span class="s0">new </span><span class="s1">Intent (ContaminationList.</span><span class="s0">this</span><span class="s1">, <a href="Analysis.java.html">Analysis</a>.</span><span class="s0">class</span><span class="s1">);
startActivity(intent);
}
}
}
</span>
</body> </html>
package de.anna.cellfreestick; /** * Created by iGEM-Bielefeld on 30.08.2015. */ public class HeavyMetals { //declaration of variables private String title; private String content; //constructs a simple list element for one of our analytes public HeavyMetals(String title, String content) { this.title = title; this.content = content; } public String getTitle() { return title; } public void setTitle(String title) { this.title = title; } public String getContent() { return content; } public void setContent(String content) { this.content = content; } @Override public String toString() { return title; } }
package de.anna.cellfreestick; import android.support.v7.app.ActionBarActivity; import android.os.Bundle; import android.view.Menu; import android.view.MenuItem; import android.widget.EditText; import android.widget.TextView; //Screen that shows you details about the different analytes public class HeavyMetalsDetailsActivity extends ActionBarActivity { //Declaration of variables String title; @Override protected void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.activity_heavy_metals_details); //find View elements title = getIntent().getStringExtra("value_title"); TextView titleHeavyMetals = (TextView) findViewById(R.id.titleHeavyMetal); titleHeavyMetals.setText(title); TextView textHeavyMetals = (TextView) findViewById(R.id.textHeavyMetal); textHeavyMetals.setText(addText(title)); } //Adds text to the view depending on the title private String addText(String title) { String mTitle; switch (title) { case "Arsenic": mTitle = getResources().getString(R.string.Arsenic); break; case "Date rape drugs": mTitle = getResources().getString(R.string.date_rape_drugs); break; case "Mercury": mTitle = getResources().getString(R.string.Mercury); break; case "Chromium": mTitle = getResources().getString(R.string.Chromium); break; case "Lead": mTitle = getResources().getString(R.string.Lead); break; case "Nickel": mTitle = getResources().getString(R.string.Nickel); break; case "Copper": mTitle = getResources().getString(R.string.Copper); break; default: mTitle = "you did not click an valid item!"; break; } return mTitle; } @Override public boolean onCreateOptionsMenu(Menu menu) { // Inflate the menu; this adds items to the action bar if it is present. getMenuInflater().inflate(R.menu.menu_heavy_metals_details, menu); return true; } @Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); //noinspection SimplifiableIfStatement if (id == R.id.action_settings) { return true; } return super.onOptionsItemSelected(item); } }
package de.anna.cellfreestick; import android.os.Bundle; import android.app.Fragment; import android.view.LayoutInflater; import android.view.View; import android.view.ViewGroup; import android.widget.TextView; /** * A simple {@link Fragment} subclass. * Use the {@link HeavyMetalsDetailsFragment#newInstance} factory method to * create an instance of this fragment. */ //default Fragment public class HeavyMetalsDetailsFragment extends Fragment { // the fragment initialization parameters, e.g. ARG_ITEM_NUMBER private static final String ARG_PARAM1 = "param1"; private static final String ARG_PARAM2 = "param2"; private String mParam1; private String mParam2; public static HeavyMetalsDetailsFragment newInstance(String param1, String param2) { HeavyMetalsDetailsFragment fragment = new HeavyMetalsDetailsFragment(); Bundle args = new Bundle(); args.putString(ARG_PARAM1, param1); args.putString(ARG_PARAM2, param2); fragment.setArguments(args); return fragment; } public HeavyMetalsDetailsFragment() { // Required empty public constructor } @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); if (getArguments() != null) { mParam1 = getArguments().getString(ARG_PARAM1); mParam2 = getArguments().getString(ARG_PARAM2); } } @Override public View onCreateView(LayoutInflater inflater, ViewGroup container, Bundle savedInstanceState) { // Inflate the layout for this fragment return inflater.inflate(R.layout.fragment_heavy_metals_details, container, false); } }
package de.anna.cellfreestick; import android.app.Activity; import android.content.Intent; import android.os.Bundle; import android.app.ListFragment; import android.view.LayoutInflater; import android.view.View; import android.view.ViewGroup; import android.widget.ArrayAdapter; import android.widget.ListView; import java.util.ArrayList; import java.util.List; /** * A fragment representing a list of Items. * Activities containing this fragment MUST implement the {@link OnFragmentInteractionListener} * interface. */ //default list fragment public class HeavyMetalsFragment extends ListFragment { // declaration of variables private static final String ARG_PARAM1 = "param1"; private static final String ARG_PARAM2 = "param2"; private String mParam1; private String mParam2; private OnFragmentInteractionListener mListener; //establishment of a new instance of the List public static HeavyMetalsFragment newInstance(String param1, String param2) { HeavyMetalsFragment fragment = new HeavyMetalsFragment(); Bundle args = new Bundle(); args.putString(ARG_PARAM1, param1); args.putString(ARG_PARAM2, param2); fragment.setArguments(args); return fragment; } /** * Mandatory empty constructor for the fragment manager to instantiate the * fragment (e.g. upon screen orientation changes). */ public HeavyMetalsFragment() { } @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); if (getArguments() != null) { mParam1 = getArguments().getString(ARG_PARAM1); mParam2 = getArguments().getString(ARG_PARAM2); } //creation of a new list with HeavyMetal instances List<HeavyMetals> heavyMetalsList = new ArrayList<HeavyMetals>(); //hardcoded filling of the list with our analytes heavyMetalsList.add(new HeavyMetals("Date rape drugs","a")); heavyMetalsList.add(new HeavyMetals("Arsenic", "b")); heavyMetalsList.add(new HeavyMetals("Mercury","c")); heavyMetalsList.add(new HeavyMetals("Chromium","d")); heavyMetalsList.add(new HeavyMetals("Lead","e")); heavyMetalsList.add(new HeavyMetals("Nickel","f")); heavyMetalsList.add(new HeavyMetals("Copper","g")); //set list adapter setListAdapter(new ArrayAdapter<HeavyMetals>(getActivity(), R.layout.simple_list_item, android.R.id.text1, heavyMetalsList)); } @Override public void onAttach(Activity activity) { super.onAttach(activity); try { mListener = (OnFragmentInteractionListener) activity; } catch (ClassCastException e) { throw new ClassCastException(activity.toString() + " must implement OnFragmentInteractionListener"); } } @Override public void onDetach() { super.onDetach(); mListener = null; } @Override public void onListItemClick(ListView l, View v, int position, long id) { super.onListItemClick(l, v, position, id); //addition of title to intent Intent intent = new Intent(getActivity(),HeavyMetalsDetailsActivity.class); String title = l.getItemAtPosition(position).toString(); intent.putExtra("value_title", title); getActivity().startActivity(intent); if (null != mListener) { // Notify the active callbacks interface (the activity, if the // fragment is attached to one) that an item has been selected. //mListener.onFragmentInteraction(DummyContent.ITEMS.get(position).id); } } /** * This interface must be implemented by activities that contain this * fragment to allow an interaction in this fragment to be communicated * to the activity and potentially other fragments contained in that * activity. * <p/> * See the Android Training lesson <a href= * "http://developer.android.com/training/basics/fragments/communicating.html" * >Communicating with Other Fragments</a> for more information. */ public interface OnFragmentInteractionListener { public void onFragmentInteraction(String id); } @Override public View onCreateView(LayoutInflater inflater, ViewGroup container, Bundle savedInstanceState) { return inflater.inflate(R.layout.fragment_heavy_metals, container, false); } }
package de.anna.cellfreestick; import android.app.ActionBar; import android.content.Intent; import android.net.Uri; import android.os.Environment; import android.provider.MediaStore; import android.support.v7.app.ActionBarActivity; import android.os.Bundle; import android.view.Menu; import android.view.MenuItem; import android.view.View; import android.widget.Button; import java.io.File; public class Instructions extends ActionBarActivity implements View.OnClickListener { //declaration of variables Button buttonTakePhotoInstructions; @Override protected void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.activity_instructions); //find view elements buttonTakePhotoInstructions = (Button) findViewById(R.id.buttonTakePhotoInstructions); buttonTakePhotoInstructions.setOnClickListener(this); } @Override public boolean onCreateOptionsMenu(Menu menu) { // Inflate the menu; this adds items to the action bar if it is present. getMenuInflater().inflate(R.menu.menu_instructions2, menu); return true; } @Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); //noinspection SimplifiableIfStatement if (id == R.id.action_settings) { return true; } return super.onOptionsItemSelected(item); } @Override public void onClick(View view) { //define intent upon click on button Intent intent = new Intent (this, TakePhoto.class); startActivity(intent); } }
package de.anna.cellfreestick; import android.app.ActionBar; import android.app.Activity; import android.content.ContentValues; import android.content.Intent; import android.graphics.Bitmap; import android.net.Uri; import android.os.Environment; import android.provider.MediaStore; import android.support.v7.app.ActionBarActivity; import android.os.Bundle; import android.util.Log; import android.view.Menu; import android.view.MenuItem; import android.view.View; import android.view.View.OnClickListener; import android.widget.Button; import android.widget.ImageView; import java.io.File; import java.io.IOException; public class MainActivity extends Activity implements OnClickListener { public Button buttonInstructions; public Button buttonTakePhoto; @Override public void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.activity_main); //find View elements buttonInstructions = (Button)findViewById(R.id.buttonInstructions); buttonTakePhoto = (Button)findViewById(R.id.buttonTakePhoto); buttonInstructions.setOnClickListener (this); buttonTakePhoto.setOnClickListener(this); } //define intents for buttons public void onClick(View v){ if(v.getId() == R.id.buttonInstructions){ Intent intent = new Intent(MainActivity.this, Instructions.class); startActivity(intent); }else if(v.getId() == R.id.buttonTakePhoto){ Intent intent = new Intent (MainActivity.this, TakePhoto.class); startActivity(intent); } } @Override public boolean onCreateOptionsMenu(Menu menu) { // Inflate the menu; this adds items to the action bar if it is present. getMenuInflater().inflate(R.menu.menu_main, menu); return true; } @Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); //noinspection SimplifiableIfStatement if (id == R.id.action_settings) { return true; } return super.onOptionsItemSelected(item); } }
package de.anna.cellfreestick; import android.content.Intent; import android.graphics.Color; import android.support.v7.app.ActionBarActivity; import android.os.Bundle; import android.util.Log; import android.view.Menu; import android.view.MenuItem; import android.view.View; import android.widget.Button; import android.widget.Space; import android.widget.TextView; import java.util.Arrays; public class Results extends ActionBarActivity implements HeavyMetalsFragment.OnFragmentInteractionListener{ @Override protected void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.activity_results); //implement list of heavymetals in layout getFragmentManager().beginTransaction() .replace(R.id.fragment2, HeavyMetalsFragment.newInstance("a","b")) .commit(); } @Override public boolean onCreateOptionsMenu(Menu menu) { // Inflate the menu; this adds items to the action bar if it is present. getMenuInflater().inflate(R.menu.menu_results, menu); return true; } @Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); //noinspection SimplifiableIfStatement if (id == R.id.action_settings) { return true; } return super.onOptionsItemSelected(item); } @Override protected void onActivityResult(int requestCode, int resultCode, Intent data) { super.onActivityResult(requestCode, resultCode, data); } @Override public void onFragmentInteraction(String id) { } }
package de.anna.cellfreestick; import android.content.ContentValues; import android.content.Intent; import android.graphics.Bitmap; import android.graphics.Color; import android.graphics.PixelFormat; import android.net.Uri; import android.provider.MediaStore; import android.support.v7.app.ActionBarActivity; import android.os.Bundle; import android.util.Log; import android.view.Menu; import android.view.MenuItem; import android.view.View; import android.widget.Button; import android.widget.ImageView; import android.widget.ListView; import android.widget.TextView; import java.io.IOException; import java.lang.reflect.Array; import java.util.Arrays; import static android.graphics.Color.parseColor; public class TakePhoto extends ActionBarActivity implements View.OnClickListener{ //declaration of variables private Button buttonResults; private ImageView imageViewPhoto; private TextView pixelanzeige; private Uri imageUri; private static final String TITLE = "TakePhoto"; private static final String DESCRIPTION = "Foto taken by App"; private static final String TAG = MainActivity.class.getSimpleName(); private static final int IMAGE_CAPTURE = 1; private Bitmap bitmap3; private int [] medianpos = new int[8]; private int [] medianneg = new int[8]; @Override protected void onCreate(Bundle savedInstanceState) { super.onCreate(savedInstanceState); setContentView(R.layout.activity_take_photo); //find view elements buttonResults = (Button) findViewById(R.id.buttonResults); buttonResults.setOnClickListener(this); imageViewPhoto = (ImageView) findViewById(R.id.imageViewPhoto); //take a picture and save it startCamera(); } //starts the camera private void startCamera(){ ContentValues values = new ContentValues(); values.put(MediaStore.Images.Media.TITLE, TITLE); values.put(MediaStore.Images.Media.DESCRIPTION, DESCRIPTION); values.put(MediaStore.Images.Media.MIME_TYPE, "image/jpeg"); imageUri = getContentResolver().insert( MediaStore.Images.Media.EXTERNAL_CONTENT_URI, values); Intent intent = new Intent(MediaStore.ACTION_IMAGE_CAPTURE); intent.putExtra(MediaStore.EXTRA_OUTPUT, imageUri); startActivityForResult(intent, IMAGE_CAPTURE); } @Override protected void onActivityResult(int requestCode, int resultCode, Intent data) { super.onActivityResult(requestCode, resultCode, data); if (requestCode == IMAGE_CAPTURE) { if (resultCode == RESULT_OK) { try { //create Bitmap from saved picture Bitmap bitmapRRR = MediaStore.Images.Media.getBitmap( getContentResolver(), imageUri); float w1 = bitmapRRR.getWidth(); float h1 = bitmapRRR.getHeight(); int h2 = 300; int w2 = (int) (w1 / h1 * (float) h2); bitmap3 = Bitmap.createScaledBitmap(bitmapRRR, w2, h2, false); //calculate the green values of examined pixels calculationGreen(); //show altered picture imageViewPhoto.setImageBitmap(bitmap3); } catch (IOException e) { Log.e(TAG, "setBitmap()", e); } } else { int rowsDeleted = getContentResolver().delete(imageUri, null, null); Log.d(TAG, rowsDeleted + " rows deleted"); } } } //calculation of the median of the green values of the examined pixels private void calculationGreen() { int[] pixelwerte = new int[100]; int[] pixelwerteGreen = new int[100]; int l1=0; int l2=0; for (int n = 1; n < 4; n = n + 2){ for (int m = 1; m < 9; m++) { int k = 0; for (int i = 0; i < 10; i++) { for (int j = 0; j < 10; j++) { pixelwerte[k] = bitmap3.getPixel(m * (bitmap3.getWidth() / 9) + i, n * (bitmap3.getHeight() / 4) + j); pixelwerteGreen[k] = Color.green(pixelwerte[k]); k++; bitmap3.setPixel(m * (bitmap3.getWidth() / 9) + i, n * (bitmap3.getHeight() / 4) + j, 0xffff0000); } } //calculation of median of green values Arrays.sort(pixelwerteGreen); if (n == 1){ medianpos[l1] = pixelwerteGreen[pixelwerteGreen.length / 2]; l1++; }else {medianneg[l2]=pixelwerteGreen[pixelwerteGreen.length/2];l2++;} } } pixelanzeige = (TextView) findViewById(R.id.pixelanzeige); pixelanzeige.setText("Please check if the red square in the left bottom corner is inside the green circle! If this is not the case, take a new picture. The calculated values for the green color of the spots: " + Arrays.toString(medianpos) + Arrays.toString(medianneg)); } @Override public boolean onCreateOptionsMenu(Menu menu) { // Inflate the menu; this adds items to the action bar if it is present. getMenuInflater().inflate(R.menu.menu_take_photo, menu); return true; } @Override public boolean onOptionsItemSelected(MenuItem item) { // Handle action bar item clicks here. The action bar will // automatically handle clicks on the Home/Up button, so long // as you specify a parent activity in AndroidManifest.xml. int id = item.getItemId(); //noinspection SimplifiableIfStatement if (id == R.id.action_settings) { return true; } return super.onOptionsItemSelected(item); } @Override public void onClick(View view) { Intent intent = new Intent(this, ContaminationList.class); //String inhalt = Arrays.toString(medianpos) + Arrays.toString(medianneg); intent.putExtra("Keyneg", medianneg); intent.putExtra("Keypos", medianpos); startActivity(intent); } }
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin" android:paddingRight="@dimen/activity_horizontal_margin" android:paddingTop="@dimen/activity_vertical_margin" android:paddingBottom="@dimen/activity_vertical_margin" tools:context="de.anna.cellfreestick.Analysis" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <TextView android:text="@string/analysis" android:layout_width="fill_parent" android:layout_height="fill_parent" android:id="@+id/textAnalysis" android:gravity="center_horizontal" android:textColor="#ffffffff"/> <ScrollView android:layout_width="wrap_content" android:layout_height="wrap_content" android:id="@+id/scrollView" android:layout_alignParentBottom="true" /> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin" android:paddingRight="@dimen/activity_horizontal_margin" android:paddingTop="@dimen/activity_vertical_margin" android:paddingBottom="@dimen/activity_vertical_margin" tools:context="de.anna.cellfreestick.ContaminationList" style="@style/Base.Theme.AppCompat" android:background="#ff322f32" > <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/title_activity_contamination_list" android:id="@+id/textViewContaminationList" android:layout_column="1" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:textSize="60sp" android:textStyle="bold" /> <TableLayout android:layout_width="match_parent" android:layout_height="match_parent" android:layout_alignParentStart="true" android:id="@+id/contaminationTable" android:layout_alignParentBottom="true" android:layout_below="@+id/textViewException"> <TableRow android:layout_width="match_parent" android:layout_height="match_parent" android:id="@+id/dateRapeDrugs"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text= "Date rape drugs" android:textSize="30sp" android:id="@+id/textViewDateRapeDrugs" android:layout_column="2" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:id="@+id/imageViewDateRapeDrugs" android:layout_column="1"/> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent" android:id="@+id/arsenic"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Arsenic" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewArsenic" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewArsenic" /> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Mercury" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewMercury" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewMercury" /> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Chromium" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewChromium" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewChromium" /> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Lead" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewLead" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewLead" /> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Nickel" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewNickel" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewNickel" /> </TableRow> <TableRow android:layout_width="match_parent" android:layout_height="match_parent"> <TextView android:textColor="#ffffffff" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Copper" android:textSize="30sp" android:layout_column="2" android:id="@+id/textViewCopper" /> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:layout_column="1" android:id="@+id/imageViewCopper" /> </TableRow> </TableLayout> <TextView android:textColor="#ffffffff" android:textSize="30sp" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="May you always drink the purest of all waters!" android:id="@+id/textViewException" android:layout_alignParentEnd="true" android:layout_below="@+id/textViewContaminationList" /> <Button android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="About" android:id="@+id/buttonAbout" android:layout_alignParentBottom="true" android:layout_alignParentLeft="true" android:textColor="#ffffffff" android:textStyle="bold" android:background="#ffe31918" android:minWidth="140dp" android:clickable="true" /> <Button android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="Details" android:id="@+id/buttonDetails" android:layout_alignParentBottom="true" android:layout_alignParentRight="true" android:textColor="#ffffffff" android:textStyle="bold" android:background="#ffe31918" android:minWidth="140dp" android:clickable="true" /> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" tools:context="de.anna.cellfreestick.HeavyMetalsDetailsActivity" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <fragment android:layout_width="match_parent" android:layout_height="match_parent" android:name="de.anna.cellfreestick.HeavyMetalsDetailsFragment" android:id="@+id/fragment" android:layout_centerVertical="true" android:layout_centerHorizontal="true" tools:layout="@layout/fragment_heavy_metals_details" /> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" tools:context="de.anna.cellfreestick.Instructions" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="Instructions" android:id="@+id/textViewInstruction" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:textSize="60sp" android:textColor="#ffffffff" android:textStyle="bold" /> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/textInstruction1" android:id="@+id/textInstruction1" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:textSize="30sp" android:layout_marginTop="80dp" android:layout_marginLeft="20dp" android:layout_marginRight="20dp" android:textColor="#ffffffff" android:textIsSelectable="false" android:textStyle="bold" /> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/textInstruction2" android:id="@+id/textInstruction2" android:layout_below="@+id/textInstruction1" android:layout_centerHorizontal="true" android:textSize="30sp" android:layout_marginTop="15dp" android:layout_marginLeft="20dp" android:layout_marginRight="20dp" android:textColor="#ffffffff" android:textStyle="bold" /> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/textInstruction3" android:id="@+id/textInstruction3" android:textSize="30sp" android:layout_marginLeft="20dp" android:layout_marginRight="20dp" android:layout_below="@+id/textInstruction2" android:layout_alignParentStart="true" android:layout_marginTop="20dp" android:textColor="#ffffffff" android:textStyle="bold" /> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/textInstruction4" android:id="@+id/textInstruction4" android:layout_below="@+id/textInstruction3" android:layout_centerHorizontal="true" android:textSize="30sp" android:layout_marginTop="20dp" android:layout_marginLeft="20dp" android:layout_marginRight="20dp" android:textColor="#ffffffff" android:textStyle="bold" /> <Button android:layout_width="fill_parent" android:layout_height="wrap_content" android:id="@+id/buttonTakePhotoInstructions" android:layout_alignParentBottom="true" android:layout_centerHorizontal="true" android:layout_marginBottom="15dp" android:layout_marginLeft="15dp" android:layout_marginRight="15dp" android:text="@string/buttonTakePhotoInstruction" android:height="20sp" android:minWidth="140dp" android:background="#ffe31918" android:textColor="#ffffffff" android:textSize="30sp" android:textStyle="bold" android:clickable="true" /> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin" android:paddingRight="@dimen/activity_horizontal_margin" android:paddingTop="@dimen/activity_vertical_margin" android:paddingBottom="@dimen/activity_vertical_margin" tools:context=".MainActivity" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <ImageView android:layout_width="wrap_content" android:layout_height="wrap_content" android:id="@+id/imageLogo" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:src="@mipmap/colilogo" android:contentDescription="@string/imageLogo" /> <Button android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="@string/buttonInstruction" android:id="@+id/buttonInstructions" android:layout_alignParentBottom="true" android:layout_alignParentStart="true" android:height="20sp" android:layout_marginLeft="15dp" android:layout_marginBottom="15dp" android:background="#ffe31918" style="@style/Base.ThemeOverlay.AppCompat.Dark" android:ellipsize="end" android:enabled="true" android:elegantTextHeight="true" android:minWidth="140sp" android:textColor="#ffffffff" android:textSize="15sp" android:textStyle="bold" android:clickable="true" /> <Button android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="@string/buttonTakePhoto" android:id="@+id/buttonTakePhoto" android:layout_alignParentBottom="true" android:layout_alignParentEnd="true" android:height="10sp" android:layout_marginBottom="15dp" android:layout_marginRight="15dp" android:background="#ffe31918" android:layout_alignParentLeft="false" android:minWidth="140sp" android:textColor="#ffffffff" android:textSize="15sp" android:textStyle="bold" android:clickable="true" /> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin" android:paddingRight="@dimen/activity_horizontal_margin" android:paddingTop="@dimen/activity_vertical_margin" android:paddingBottom="@dimen/activity_vertical_margin" tools:context="de.anna.cellfreestick.Results" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="@string/textViewResults" android:id="@+id/textViewResults" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:textSize="60sp" android:textColor="#ffffffff" android:textStyle="bold" /> <fragment android:layout_width="wrap_content" android:layout_height="wrap_content" android:name="de.anna.cellfreestick.HeavyMetalsFragment" android:id="@+id/fragment2" tools:layout="@android:layout/simple_list_item_1" android:layout_centerInParent="true" android:textColor="#ffffffff" /> <ImageView android:id="@+id/icon" android:layout_width="22px" android:layout_height="22px" android:layout_marginLeft="4px" android:layout_marginRight="10px" android:layout_marginTop="4px" android:src="@drawable/logo" > </ImageView> </RelativeLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" android:paddingLeft="@dimen/activity_horizontal_margin" android:paddingRight="@dimen/activity_horizontal_margin" android:paddingTop="@dimen/activity_vertical_margin" android:paddingBottom="@dimen/activity_vertical_margin" tools:context="de.anna.cellfreestick.TakePhoto" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"> <ImageView android:layout_width="match_parent" android:layout_height="match_parent" android:id="@+id/imageViewPhoto" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:layout_marginTop="20dp" android:layout_marginBottom="300dp" android:focusable="false" android:layout_marginRight="20dp" android:layout_marginLeft="20dp" /> <Button android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="@string/buttonResults" android:id="@+id/buttonResults" android:layout_alignParentBottom="true" android:layout_centerHorizontal="true" android:layout_marginBottom="15dp" android:background="#ffe31918" android:height="20sp" android:minWidth="140dp" android:textColor="#ffffffff" android:textStyle="bold" android:clickable="true" /> <TextView android:textSize="20sp" android:layout_width="wrap_content" android:layout_height="wrap_content" android:text="New Text" android:id="@+id/pixelanzeige" android:layout_above="@+id/buttonResults" android:textColor="#ffffffff" /> </RelativeLayout>
<?xml version="1.0" encoding="utf-8"?> <LinearLayout xmlns:android="http://schemas.android.com/apk/res/android" android:orientation="vertical" android:layout_width="match_parent" android:layout_height="match_parent" android:background="#ff322f32"> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:textSize="40sp" android:textStyle="bold" android:text="Details about:" android:textColor="#ffffffff" android:id="@+id/textViewHeavyMetalsInfo" android:layout_gravity="center_horizontal" /> <ListView android:layout_width="match_parent" android:layout_height="match_parent" android:id="@android:id/list" android:divider="#ffffffff" android:dividerHeight="2px" android:layout_marginTop="10dp" android:layout_marginLeft="10dp" android:layout_marginRight="10dp" android:background="#ff322f32" style="@style/Base.Theme.AppCompat"/> </LinearLayout>
<RelativeLayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" android:layout_width="match_parent" android:layout_height="match_parent" tools:context="de.anna.cellfreestick.MainActivity" android:gravity="top" android:background="#ff322f32" style="@style/Base.Theme.AppCompat" android:padding="20sp"> <TextView android:layout_width="wrap_content" android:layout_height="wrap_content" android:textAppearance="?android:attr/textAppearanceLarge" android:text="Large Text" android:id="@+id/titleHeavyMetal" android:layout_alignParentTop="true" android:layout_centerHorizontal="true" android:textSize="60sp" android:textStyle="bold" android:textColor="#ffffffff" /> <TextView android:layout_width="match_parent" android:layout_height="match_parent" android:id="@+id/textHeavyMetal" android:layout_centerHorizontal="true" android:layout_below="@+id/titleHeavyMetal" android:text="Line1: \n-Line2\n-Line3\n-Line4\n-Line5\n-Line6\n-Line7\n-Line8\n-Line9\n-Line10\-Line11\n-Line12\n-Line13\n-Line14 " android:textSize="20sp" android:textColor="#ffffffff" android:layout_marginTop="20dp" /> </RelativeLayout>
<?xml version="1.0" encoding="utf-8"?> <TextView xmlns:android="http://schemas.android.com/apk/res/android" android:id="@android:id/text1" android:layout_width="match_parent" android:layout_height="wrap_content" android:layout_gravity="center_vertical" android:padding="10dp" android:textSize="30sp" android:textColor="#ffffffff" > </TextView>