Difference between revisions of "Team:Marburg/Labbook/Curli"
| Line 530: | Line 530: | ||
</figure> | </figure> | ||
| + | <br> | ||
| + | <h1>15/07/06</h1> | ||
| + | <h2><a href="https://2015.igem.org/Team:Marburg/Protocols/Protocol17">Transformation</a> </h2> | ||
| + | <p>pC3 into W3110Δ, W3110 RH, W3110 RHΔ --> not successful</p> | ||
| + | <h2><a href="https://2015.igem.org/Team:Marburg/Protocols/Protocol16">Transformation</a> </h2> | ||
| + | <p>pC3 into W3110 --> not successful</p> | ||
| + | <h2>preparation of Cryo-Stocks</h2> | ||
| + | <p>plate W3110 and W3110Δ on plates</p> | ||
| + | <br> | ||
| + | <h1>15/07/07</h1> | ||
| + | <h2><a href="https://2015.igem.org/Team:Marburg/Protocols/Protocol17">Transformation</a> </h2> | ||
| + | <p>pC3 and pUC19 (as control) into W3110Δ, W3110 RH, W3110 RHΔ </p> | ||
| + | <h2><a href="https://2015.igem.org/Team:Marburg/Protocols/Protocol16">Transformation</a> </h2> | ||
| + | <p>pC3 and pUC19 into W3110, DH5α</p> | ||
| + | |||
| + | <h2>Overnight cultures</h2> | ||
| + | <p>W3110, W3110Δ and DH5α + pC3 for cryo stock</p> | ||
| + | |||
| + | |||
| + | <br> | ||
| + | <h1>15/07/08</h1> | ||
| + | <p>Transformation did work (except for the DH5α strains, probably mistake while pipetting or something), prepared new plate with cells, because the growth was to compact</p> | ||
Revision as of 21:26, 13 September 2015
15/04/28
GXL-PCR
Used primers:
Promotor (plac): IC1 + IC2
csgA: IC3 + IC4
RBS + mCherry: IC5 + IC6
Backbone: IC7 + IC8
15/05/07
Resuspending of speedvaced gel extracted plac, mCherry, Curly
high values (100g/µl-250ng/µl) but weird curves
CPEC
15/05/08
Gel of CEPC reaction
No clear band visible, with a lot of imagination there is a band, which would be right in size -> transform anyway
Transformation of CEPC Curly
--> next day: colonies are visible
15/06/08
Overnightcultures
W3110 Δcsagα cells in 1 mL LB-Media
eCsgAα-Cells in 1 mL LB-Cm-Media
15/06/09
Overdayculture
W3110 Δcsagα + pC1 in 3 mL LB-Cm-Media (1% Glucose)
Platereader experiment
1. Add 30 µL overnight culture (probe B1 in the 96-well-plate)
2. After 2 h: induction with IPTG (probe B2 in the 96-well-plate)
3. After 2 h: fluorescence measurement with the plate reader
4. Non fluorescent cells (Control)
5. culture 4h after induction
6. culture 4h after induction 1:10 diluted
| 1 | 2 | 3 | 4 | 5 | 6 | blank | |
| OD | 0,7117 | 0,2091 | 0,2882 | 0,1249 | 0,4069 | 0,0909 | 0,0379 |
| fluorescence | 3850 | 229 | 303 | 203 | 1297 | 342 | 225 |
| F/OD | 5410 | 1095 | 1051 | 1625 | 3188 | 3762 |
Overday culture (W3110 DcsagA cells)
- 50 mL SOB-Medium
- Add 50 µL overnight culture
- Incubate 3 h at 30°C, then 1 h at 37°C
- OD = 0,46
- Preparation of electrocompetent cells
Electrocompetent cells
W3110 Δcsagα cells
Transformation
pC1 (constructed Curli-Plasmid)and iGEM (Curli, Lyon, 2014) plasmid (p70) into W3110 Δcsagα cells --> repetition because not many colonies (pC1) and not successful (p70)
15/06/10
Transformation
p70 in DH5α-Cells and pC1 in W3110-Cells, repetition of the streak out for the W3110 ΔcsgA cells (no colony picking possible)
15/06/11
Colony-PCR
Overnightcultures
W3110_pC1,W3110Δ_pC1,p70 in LB-Cm-Media
15/06/12
Platereader experiment
- Preparation of a day culture from overnight culture
- After 2h, prepared 96 well plate with different dillution of IPTG (10µL) (0mM, 0.01mM, 0.1mM, 0.5mM, 1mM, 10mM) to each strain (90µL) (DH5α, W3110 WT, W3110 ΔcsgA)
- Read out by fluorescence Photometer
15/06/24
Restriction
Template: pC1
Enzymes: NheI, BamHI
Temperature: 37°C
PCR-Purification
Ligation
Ligation of pC1 with SpyTag (DNA via primer-annealing)--> pC3Transformation
Trafo of pC3 into DH5α15/06/25
CV-staining
Preparation of SDS-probes
W3110, W3110 ΔcsgA, W3310 ΔcsgA pC1, W3310 ΔcsgA p70
15/06/26
SDS-Page
15/07/02
Colony-PCR
MiniPrep
Miniprep of pC315/07/03
CV-Staining
15/07/06
Transformation
pC3 into W3110Δ, W3110 RH, W3110 RHΔ --> not successful
Transformation
pC3 into W3110 --> not successful
preparation of Cryo-Stocks
plate W3110 and W3110Δ on plates
15/07/07
Transformation
pC3 and pUC19 (as control) into W3110Δ, W3110 RH, W3110 RHΔ
Transformation
pC3 and pUC19 into W3110, DH5α
Overnight cultures
W3110, W3110Δ and DH5α + pC3 for cryo stock
15/07/08
Transformation did work (except for the DH5α strains, probably mistake while pipetting or something), prepared new plate with cells, because the growth was to compact
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