Difference between revisions of "Team:KU Leuven/Modeling/Toulouse"

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     <h2> The Toulouse FBA Model </h2>
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     <h2> Toulouse FBA Model </h2>
 
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  <p>We cooperated with Toulouse on the modeling. Here we describe the Flux-Balance-Analysis the Toulouse time generously
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  <p>We cooperated with Toulouse on the modeling. Here we describe the Flux-Balance-Analysis the Toulouse team generously
 
  performed for us. <br/>
 
  performed for us. <br/>
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Flux balance analysis is a widely used approach for studying the flow trough metabolic networks. In our
 +
case we are interested in the Leucine and AHL production rates of the type A cells. To obtain these values
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toulouse ran a FB analysis.
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When a FBA is set up. The metabolic network of the organism in question is represented as a matrix $$\mathbf{S}$$
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is filled with the stoichiometric constants of each reaction.
 
   
 
   
  

Revision as of 18:53, 14 September 2015

Logo

In numerical
simulation
a computational
molecule describes
the space and
time relationship
of data.

Toulouse FBA Model

We cooperated with Toulouse on the modeling. Here we describe the Flux-Balance-Analysis the Toulouse team generously performed for us.
Flux balance analysis is a widely used approach for studying the flow trough metabolic networks. In our case we are interested in the Leucine and AHL production rates of the type A cells. To obtain these values toulouse ran a FB analysis. When a FBA is set up. The metabolic network of the organism in question is represented as a matrix $$\mathbf{S}$$ is filled with the stoichiometric constants of each reaction.

Colony level

Our colony layer model relies on a Keller-Segel type system of differential equations. These equations are simulated using finite differences.

Learn more

Hybrid model

Coming soon

Internal model

Coming soon

Colony level

Our colony layer model relies on a Keller-Segel type system of differential equations. These equations are simulated using finite differences.

Hybrid model

Coming soon

Internal model

Coming soon

Contact

Address: Celestijnenlaan 200G room 00.08 - 3001 Heverlee
Telephone n°: +32(0)16 32 73 19
Mail: igem@chem.kuleuven.be