Difference between revisions of "Team:Bielefeld-CeBiTec/Design"
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<div class="Subtitle"> | <div class="Subtitle"> | ||
<h2> The first steps</h2> | <h2> The first steps</h2> | ||
| − | <p> | + | <p> We planed to design a practical test stripe using fluorescence as output signal. But fluorescence outside the lab sounds not really simple to use. So we had to find a easy way to analyze the output. Therefore we wanted to test in the beginning of our project, if it could work to photograph fluorescence with a smartphone. We got a filter from light engineering from the women cultural center Bielefeld e.V. ("Frauenkulturzentrum Bielefeld e.V.") and put it in front of the smartphone. |
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| + | In the picture below we took a picture with these filter from purified GFP, sfGFP lysate and lysate without sfGFP. You can see different colors and a different brightnesses in the picture. So in our first impression we thought it's worth to try some other filters, to find the perfect Filter for sfGFP imaging with almost no background signal. </p> | ||
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| − | <p> The next step was to create a dark environment. Therefore we did handicrafts to design a "black box". Now it was possible to take photos under | + | <p> The next step was to create a dark environment. Therefore we did handicrafts to design a "black box". Now it was possible to take photos under defined conditions and constant dark background. </p> |
<figure style="margin:auto; width: 300px"> | <figure style="margin:auto; width: 300px"> | ||
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<h2> The filter combinations </h2> | <h2> The filter combinations </h2> | ||
| − | <p> The | + | <p> The essential requirements for taking comparable photos are done. Now we had to find the ideal filter combination. So we made a lot of photos with the preselection. We tested 6 filters for emission and combined every filter for emission with up to 16 filters for extinction.After analyzing the photos with the image processing software Fiji, the optimal filter combination found was tokyo blue (071) in front of the flash and twickenham green (736) in front of the camera. </p> |
Revision as of 20:16, 14 September 2015
Prototype Design
The first steps
We planed to design a practical test stripe using fluorescence as output signal. But fluorescence outside the lab sounds not really simple to use. So we had to find a easy way to analyze the output. Therefore we wanted to test in the beginning of our project, if it could work to photograph fluorescence with a smartphone. We got a filter from light engineering from the women cultural center Bielefeld e.V. ("Frauenkulturzentrum Bielefeld e.V.") and put it in front of the smartphone. In the picture below we took a picture with these filter from purified GFP, sfGFP lysate and lysate without sfGFP. You can see different colors and a different brightnesses in the picture. So in our first impression we thought it's worth to try some other filters, to find the perfect Filter for sfGFP imaging with almost no background signal.
Therefore we bought a lee color filter catalog and began to test different filter combinations. But before testing we decided to measure the extinction and emission spectra from sfGFP as a basis to choose the most promising filter combination and to have a look if the smartphone flash really extincts sfGFP. The preselection was possible, because we had access to the light transmitting spectra of almost every filter.
The next step was to create a dark environment. Therefore we did handicrafts to design a "black box". Now it was possible to take photos under defined conditions and constant dark background.
The essential requirements for taking comparable photos are done. Now we had to find the ideal filter combination. So we made a lot of photos with the preselection. We tested 6 filters for emission and combined every filter for emission with up to 16 filters for extinction.After analyzing the photos with the image processing software Fiji, the optimal filter combination found was tokyo blue (071) in front of the flash and twickenham green (736) in front of the camera.
As you can see in the picture above it is really important to choose the right filters. But is it only possible to photograph sfGFP and GFP? To find out, we tried to photograph monomeric red fluorescent protein (mRFP) lysate.
Does it work on Paper?
So far so good. It works. But does it also works with small amounts of volume and on paper? Therefore we took filter paper and put the lysate on the paper and took the photos. As you can see in the picture at the bottom, it is possible to photograph small amounts (5 µl) on paper up to a 1:1 dilution.
Now we had to find out if we can photograph the fluorescence from the CFPS on paper. So after a CFPS run on paper, we took the scrap of paper and took a photo from it.
The 3D print
Ok, the fluorescence detections works fine, but it's not really practical to take the photo. The filter have to be in the right position direct in front of the camera respectively the flash. Also it has to be quite dark for high quality pictures. Therefore we designed a box and realized it with a 3D printer. The top can be changed specific for the smartphone you use. The test stripe can be placed on the push loading drawer and inserted into the box. So it's quite easy to use. You just have to put the smartphone on the top, insert the test strip an take the photo.
