Difference between revisions of "Team:Manchester-Graz/Project/Vectordesign"
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<p>The second QS-System we use, CepR/I, belongs to the opportunistic pathogen <i>Burkholderia cenocepacia</i>. Similar to the LuxR/I system, CepR acts as an activator of its corresponding promoter, P<sub>aidA</sub>, when a certain level of octanoyl-homoserinelactone (C8-HSL) is reached (4). C8-HSL is produced by CepI. CepR also binds 3OC6-HSL, however will not work as an activator, as the additional two carbon-atoms are mandatory, for CepR’s RNA-Polymerase-recruiting ability (4). This way CepR works as a competitive binding site for 3OC6-HSL, that putatively allows us to reach higher cell densities and thus higher 3OC6-HSL concentration before the EsaR/I expression system gets activated. <br><br></p> | <p>The second QS-System we use, CepR/I, belongs to the opportunistic pathogen <i>Burkholderia cenocepacia</i>. Similar to the LuxR/I system, CepR acts as an activator of its corresponding promoter, P<sub>aidA</sub>, when a certain level of octanoyl-homoserinelactone (C8-HSL) is reached (4). C8-HSL is produced by CepI. CepR also binds 3OC6-HSL, however will not work as an activator, as the additional two carbon-atoms are mandatory, for CepR’s RNA-Polymerase-recruiting ability (4). This way CepR works as a competitive binding site for 3OC6-HSL, that putatively allows us to reach higher cell densities and thus higher 3OC6-HSL concentration before the EsaR/I expression system gets activated. <br><br></p> | ||
− | <p>Our vector was designed in a way that EsaR, EsaI and CepR are constitutively expressed by the P<sub>esaS</sub>-promoter. As long as the 3OC6-HSL concentration is low enough, EsaR will additionally increase its own transcription, creating a positive feedback loop. <div id="pictureleft" style="height:160px;"><img src="https://static.igem.org/mediawiki/2015/7/7a/Manchester-Graz_HSL_website.png" alt="HSL" width="350"><br> <b>Figure 2</b> Homoserinelactone synthesis by EsaI and CepI.</div> <p>When the 3OC6-HSL threshold is reached, transcription of the PesaRC initiates, while the P<sub>esaS</sub>-feedback loop is turned off. The activation of the promoter is shown and measured on the expression of cyan fluorescent protein (CFP). Additionally to the reporter gene CepI also gets expressed, resulting in the time-shifted activation of our second QS-system. When the C8-HSL threshold is reached, CepR can work as an activator of the P<sub>aidA</sub> promoter that transcribes monomeric red fluorescent protein (mRFP) as a second reporter gene. <br> | + | <p>Our vector was designed in a way that EsaR, EsaI and CepR are constitutively expressed by the P<sub>esaS</sub>-promoter. As long as the 3OC6-HSL concentration is low enough, EsaR will additionally increase its own transcription, creating a positive feedback loop. <div id="pictureleft" style="height:160px; margin-right:10px;"><img src="https://static.igem.org/mediawiki/2015/7/7a/Manchester-Graz_HSL_website.png" alt="HSL" width="350"><br> <b>Figure 2</b> Homoserinelactone synthesis by EsaI and CepI.</div> <p>When the 3OC6-HSL threshold is reached, transcription of the PesaRC initiates, while the P<sub>esaS</sub>-feedback loop is turned off. The activation of the promoter is shown and measured on the expression of cyan fluorescent protein (CFP). Additionally to the reporter gene CepI also gets expressed, resulting in the time-shifted activation of our second QS-system. When the C8-HSL threshold is reached, CepR can work as an activator of the P<sub>aidA</sub> promoter that transcribes monomeric red fluorescent protein (mRFP) as a second reporter gene. <br> |
To avoid any leaky read through of transcription terminators, the constitutively expressed transcripts of the regulatory proteins of the two QS-systems as well as the beta-lactamase resistance marker, were positioned in the opposite direction of the auto-induced P<sub>aidA</sub> – and P<sub>esaRC</sub> –promoter (Figure 3). <br>Additionally P<sub>aidA</sub> was placed upfront of P<sub>esaRC</sub>. All reporter genes can easily be replaced by any other genes by standard cloning techniques. <br></p></p> | To avoid any leaky read through of transcription terminators, the constitutively expressed transcripts of the regulatory proteins of the two QS-systems as well as the beta-lactamase resistance marker, were positioned in the opposite direction of the auto-induced P<sub>aidA</sub> – and P<sub>esaRC</sub> –promoter (Figure 3). <br>Additionally P<sub>aidA</sub> was placed upfront of P<sub>esaRC</sub>. All reporter genes can easily be replaced by any other genes by standard cloning techniques. <br></p></p> | ||
Revision as of 20:32, 15 September 2015