Difference between revisions of "Team:EPF Lausanne/Test"

 
(298 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
<!--DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">-->
+
{{:Team:EPF_Lausanne/Top_Nav}}
 
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
 
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
−
  <head>
+
<body>
−
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
−
    <meta name="generator" content="MediaWiki 1.16.5" />
+
−
<link rel="alternate" type="application/x-wiki" title="Edit" href="/wiki/index.php?title=Team:EPF_Lausanne&amp;action=edit" />
+
−
<link rel="edit" title="Edit" href="/wiki/index.php?title=Team:EPF_Lausanne&amp;action=edit" />
+
−
<link rel="shortcut icon" href="/favicon.ico" />
+
−
<link rel="search" type="application/opensearchdescription+xml" href="/wiki/opensearch_desc.php" title="2015.igem.org (en)" />
+
−
<link title="Creative Commons" type="application/rdf+xml" href="/wiki/index.php?title=Team:EPF_Lausanne&amp;action=creativecommons" rel="meta" />
+
−
<link rel="copyright" href="http://creativecommons.org/licenses/by/3.0/" />
+
−
<link rel="alternate" type="application/atom+xml" title="2015.igem.org Atom feed" href="/wiki/index.php?title=Special:RecentChanges&amp;feed=atom" />  <title>Team:EPF_Lausanne- 2015.igem.org</title>
+
−
    <style type="text/css" media="screen, projection">/*<![CDATA[*/
+
−
      @import "/wiki/skins/common/shared.css?270";
+
−
      @import "/wiki/skins/igem/main.css?270";
+
−
    /*]]>*/</style>
+
−
    <link rel="stylesheet" type="text/css" media="print" href="/wiki/skins/common/commonPrint.css?270" />
+
−
    <!--[if lt IE 5.5000]><style type="text/css">@import "/wiki/skins/igem/IE50Fixes.css?270";</style><![endif]-->
+
−
    <!--[if IE 5.5000]><style type="text/css">@import "/wiki/skins/igem/IE55Fixes.css?270";</style><![endif]-->
+
−
    <!--[if IE 6]><style type="text/css">@import "/wiki/skins/igem/IE60Fixes.css?270";</style><![endif]-->
+
−
    <!--[if IE 7]><style type="text/css">@import "/wiki/skins/igem/IE70Fixes.css?270";</style><![endif]-->
+
−
    <!--[if lt IE 7]><script type="text/javascript" src="/wiki/skins/common/IEFixes.js?270"></script>
+
−
    <meta http-equiv="imagetoolbar" content="no" /><![endif]-->
+
−
   
+
−
    <script>
+
−
var skin="igem",
+
−
stylepath="/wiki/skins",
+
−
wgUrlProtocols="http\\:\\/\\/|https\\:\\/\\/|ftp\\:\\/\\/|irc\\:\\/\\/|gopher\\:\\/\\/|telnet\\:\\/\\/|nntp\\:\\/\\/|worldwind\\:\\/\\/|mailto\\:|news\\:|svn\\:\\/\\/",
+
−
wgArticlePath="/$1",
+
−
wgScriptPath="/wiki",
+
−
wgScriptExtension=".php",
+
−
wgScript="/wiki/index.php",
+
−
wgVariantArticlePath=false,
+
−
wgActionPaths={},
+
−
wgServer="https://2015.igem.org",
+
−
wgCanonicalNamespace="",
+
−
wgCanonicalSpecialPageName=false,
+
−
wgNamespaceNumber=0,
+
−
wgPageName="Team:EPF_Lausanne",
+
−
wgTitle="Team:EPF_Lausanne",
+
−
wgAction="view",
+
−
wgArticleId=8760,
+
−
wgIsArticle=true,
+
−
wgUserName="Awowen",
+
−
wgUserGroups=["*", "user", "autoconfirmed"],
+
−
wgUserLanguage="en",
+
−
wgContentLanguage="en",
+
−
wgBreakFrames=false,
+
−
wgCurRevisionId=403233,
+
−
wgVersion="1.16.5",
+
−
wgEnableAPI=true,
+
−
wgEnableWriteAPI=true,
+
−
wgSeparatorTransformTable=["", ""],
+
−
wgDigitTransformTable=["", ""],
+
−
wgMainPageTitle="Main Page",
+
−
wgFormattedNamespaces={"-2": "Media", "-1": "Special", "0": "", "1": "Talk", "2": "User", "3": "User talk", "4": "2015.igem.org", "5": "2015.igem.org talk", "6": "File", "7": "File talk", "8": "MediaWiki", "9": "MediaWiki talk", "10": "Template", "11": "Template talk", "12": "Help", "13": "Help talk", "14": "Category", "15": "Category talk"},
+
−
wgNamespaceIds={"media": -2, "special": -1, "": 0, "talk": 1, "user": 2, "user_talk": 3, "2015.igem.org": 4, "2015.igem.org_talk": 5, "file": 6, "file_talk": 7, "mediawiki": 8, "mediawiki_talk": 9, "template": 10, "template_talk": 11, "help": 12, "help_talk": 13, "category": 14, "category_talk": 15, "image": 6, "image_talk": 7},
+
−
wgSiteName="2015.igem.org",
+
−
wgCategories=[],
+
−
wgMWSuggestTemplate="https://2015.igem.org/wiki/api.php?action=opensearch\x26search={searchTerms}\x26namespace={namespaces}\x26suggest",
+
−
wgDBname="2015_igem_org",
+
−
wgSearchNamespaces=[0],
+
−
wgMWSuggestMessages=["with suggestions", "no suggestions"],
+
−
wgRestrictionEdit=[],
+
−
wgRestrictionMove=[],
+
−
wgAjaxWatch={"watchMsg": "Watch", "unwatchMsg": "Unwatch", "watchingMsg": "Watching...", "unwatchingMsg": "Unwatching...", "tooltip-ca-watchMsg": "Add this page to your watchlist", "tooltip-ca-unwatchMsg": "Remove this page from your watchlist"};
+
−
</script>               
+
−
    <script type="text/javascript" src="/wiki/skins/common/wikibits.js?270"><!-- wikibits js --></script>
+
−
    <!-- Head Scripts -->
+
−
<script src="/wiki/skins/common/ajax.js?270"></script>
+
−
<script src="/wiki/skins/common/ajaxwatch.js?270"></script>
+
−
<script src="/wiki/skins/common/mwsuggest.js?270"></script>
+
−
    <script type="text/javascript" src="/wiki/index.php?title=-&amp;action=raw&amp;smaxage=0&amp;gen=js&amp;useskin=igem"><!-- site js --></script>
+
−
  <!-- jQuery Javascript -->
+
−
  <script type='text/javascript'        src ='/common/jquery-latest.min.js'></script>
+
−
  <script type='text/javascript'        src ='/common/tablesorter/jquery.tablesorter.min.js'></script>
+
−
        <link rel='stylesheet' type='text/css' href='/common/tablesorter/themes/groupparts/style.css' />
+
−
        <link rel='stylesheet' type='text/css' href='/common/table_styles.css' />
+
−
        <link rel='stylesheet' type='text/css' href='/forum/forum_styles.css' />
+
−
  <script type='text/javascript'        src ='/forum/forum_scripts.js'></script>
+
−
  </head>
+
  
−
 
+
     <div class="carousel slide" id="carousel-home">
−
<head>
+
      <div class="carousel-inner">
−
 
+
        <div class="item active">
−
<style type="text/css">
+
          <img class="img-responsive center-block" src="https://static.igem.org/mediawiki/2015/4/4b/EPF_Lausanne_Home1.png" alt="First slide">
−
 
+
−
  #contentSub, #footer-box, #catlinks, #search-controls,
+
−
  #p-logo, .printfooter, .firstHeading, .visualClear {
+
−
      display: none;
+
−
  }
+
−
 
+
−
  #top-section {     
+
−
    border: 0 none;
+
−
    height: 14px;
+
−
    z-index: 100;
+
−
    top: 0;
+
−
    position: fixed;
+
−
    width: 975px;
+
−
    left: 50%;
+
−
    margin-left: -487px;
+
−
  }
+
−
 
+
−
  #globalWrapper, #content {   
+
−
    width: 100%;
+
−
    height: 100%;
+
−
    border: 0px;
+
−
    background-color: transparent;
+
−
    margin: 0px;
+
−
    padding: 0px;
+
−
    font-size: 100%;
+
−
  }
+
−
 
+
−
  html, body, .wrapper {   
+
−
    width: 100%;
+
−
    height: 100%;
+
−
    background-color: transparent;
+
−
  }
+
−
 
+
−
  .navbar {
+
−
    margin: 0 auto;
+
−
    margin-top: 1em;
+
−
    padding: 1em;
+
−
    border-radius: 0px;
+
−
  }
+
−
 
+
−
</style>
+
−
 
+
−
   
+
−
 
+
−
    <!--
+
−
    Stone Template
+
−
    http://www.templatemo.com/preview/templatemo_452_stone
+
−
    -->
+
−
    <!-- Bootstrap Stylesheet -->
+
−
    <link rel="stylesheet" href="https://2015.igem.org/Team:EPF_Lausanne/Test/css/bootstrap?action=raw&amp;ctype=text/css" type="text/css">
+
−
   
+
−
    <!-- FontAwesome Icons -->
+
−
    <link rel="stylesheet" href="http://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css">
+
−
   
+
−
    <!-- Normailize Stylesheet -->
+
−
    <link rel="stylesheet" href="https://2015.igem.org/Team:EPF_Lausanne/Test/css/normalize?action=raw&amp;ctype=text/css" type="text/css">
+
−
 
+
−
    <!-- Main Styles -->
+
−
    <link rel="stylesheet" href="https://2015.igem.org/Team:EPF_Lausanne/Test/css/templatemo-style?action=raw&amp;ctype=text/css" type="text/css">
+
−
 
+
−
    <script src="https://2015.igem.org/Team:EPF_Lausanne/Test/js/mordernizr-2.6.2?action=raw&amp;ctype=text/js"></script>
+
−
 
+
−
</head>
+
−
<body  class="loading">
+
−
    <!--[if lt IE 7]>
+
−
    <p class="chromeframe">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade your browser</a> or <a href="http://www.google.com/chromeframe/?redirect=true">activate Google Chrome Frame</a> to improve your experience.</p>
+
−
    <![endif]-->
+
−
 
+
−
    <!-- HEADER -->
+
−
     <div class="site-header">
+
−
        <div class="container">
+
−
            <div class="row">
+
−
                <nav class="navbar navbar-default navbar-static-top">
+
−
                    <div class="navbar-header">
+
−
                        <button class="navbar-toggle" type="button" data-toggle="collapse" data-target="#main-menu">
+
−
                            <span class="sr-only">Toggle navigation</span>
+
−
                            <i class="fa fa-bars"></i>
+
−
                        </button>
+
−
                        <a class="navbar-brand" href="https://2015.igem.org/Team:EPF_Lausanne/Test">Bio Logic</a>
+
−
                    </div>
+
−
                    <div class="collapse navbar-collapse" id="main-menu">
+
−
                        <ul class="nav navbar-nav navbar-right">
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Test">Home</a></li>
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Project">Project</a></li>
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Achievements">Achievements</a></li>
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Policy">Policy and Practices</a></li>
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Notebook">Notebook</a></li>
+
−
                            <li><a href="https://2015.igem.org/Team:EPF_Lausanne/Team">Team</a></li>
+
−
                        </ul>
+
−
                    </div>
+
−
                </nav>       
+
−
            </div>
+
 
         </div>
 
         </div>
−
    </div> <!-- .site-header -->
+
         <div class="item">
−
 
+
          <img class="img-responsive center-block" src="https://static.igem.org/mediawiki/2015/4/4b/EPF_Lausanne_Home2.png" alt="Second slide">
−
 
+
−
    <!-- SLIDER -->
+
−
    <div class="site-slider">
+
−
         <div class="flexslider">
+
−
            <ul class="slides">
+
−
                <li class="slide">
+
−
                    <div class="overlay"></div>
+
−
                    <img src="https://static.igem.org/mediawiki/2015/f/fb/EPF_Lausanne_Budding_yeast.jpg" alt="">
+
−
                    <div class="slider-caption">
+
−
                        <div class="title">
+
−
                            <h2>YEAST IS THE </h2>
+
−
                            <h2>ANSWER</h2>
+
−
                        </div>
+
−
                        <a href="#" class="slider-button">Read More</a>
+
−
                    </div>
+
−
                </li>
+
−
                <li class="slide">
+
−
                    <div class="overlay"></div>
+
−
                    <img src="https://static.igem.org/mediawiki/2015/1/1c/EPF_Lausanne_Large_E.coli-plush.jpg" alt="">
+
−
                    <div class="slider-caption">
+
−
                        <div class="title">
+
−
                            <h2>E. COLI</h2>
+
−
                            <h2>IS AlSO</h2>
+
−
                        </div>
+
−
                        <a href="#" class="slider-button">Read More</a>
+
−
                    </div>
+
−
                </li>
+
−
            </ul>
+
−
        </div> 
+
−
    </div> <!-- .site-slider -->
+
−
   
+
−
 
+
−
    <div class="first-section">
+
−
        <div class="container">
+
−
            <div class="row">
+
−
                <div class="col-md-6">
+
−
                    <h3>Logic Orthogonal GRNA Implemented Circuit</h3>
+
−
                    <p>The aim of our project is to enable the simple and reproducible design of modular digital circuits within living cells. Cells possess the ability to accept biological data as input and process it according to predefined instructions. We plan to harness this potential by designing bio-elements that behave as transistors. Our goal is to assemble these transistors to create a programmable logic gate array.</p>
+
−
                </div>
+
−
                <div class="col-md-6 text-center">
+
−
                    <div class="image-holder">
+
−
                        <img src="https://static.igem.org/mediawiki/2015/a/a3/EPF_Lausanne_Logical_Circuit.png" alt="">
+
−
                    </div>
+
−
                </div>
+
−
            </div>
+
 
         </div>
 
         </div>
−
    </div>
+
         <div class="item">
−
 
+
          <img class="img-responsive center-block" src="https://static.igem.org/mediawiki/2015/9/9b/EPF_Lausanne_Home3.png" alt="Third slide">
−
<!--
+
−
    <div class="second-section">
+
−
         <div class="container">
+
−
            <div class="row">
+
−
                <div class="col-md-3 col-sm-6 text-center">
+
−
                    <h4>Thinking binary</h4>
+
−
                    <p>Boolean Logic is the bedrock of the digital revolution. Developed by George Boole in the mid-19th century, it is based on a simple set of values: 0 (“FALSE”) or 1 (“TRUE”).  In computers, all information is represented by strings of 0s and 1s - multiple representations of binary digits or “Bits”. Bits are physically implemented by two-state devices named transistors. The assembling of transistors forms logic gates - which enables digital circuits to exhibit incredibly complex behaviours in the everyday objects that surround us.</p>
+
−
                </div>
+
−
                <div class="col-md-3 col-sm-6 text-center">
+
−
                    <img src="https://static.igem.org/mediawiki/2015/5/57/EPF_Lausanne_Website_design.png" alt="">
+
−
                    <h4>Command our plasmids</h4>
+
−
                </div>
+
−
                <div class="col-md-3 col-sm-6 text-center">
+
−
                    <img src="https://static.igem.org/mediawiki/2015/3/37/EPF_Lausanne_DNA.png" alt="">
+
−
                    <h4>Insert plasmid</h4>
+
−
                </div>
+
−
                <div class="col-md-3 col-sm-6 text-center">
+
−
                    <img src="https://static.igem.org/mediawiki/2015/e/e4/EPF_Lausanne_World.png" alt="">
+
−
                    <h4>Save the world</h4>
+
−
                </div>
+
−
            </div>
+
 
         </div>
 
         </div>
−
    </div>
+
        <div class="item">
−
-->
+
          <img class="img-responsive center-block" src="https://static.igem.org/mediawiki/2015/1/1a/EPF_Lausanne_Home4.png" alt="Fourth slide">
 +
        </div>
 +
      </div>
 +
      <a href="#carousel-home" class="left carousel-control" data-slide="prev">
 +
        <span class="icon-prev"></span>
 +
      </a><!-- end left control -->
 +
      <a href="#carousel-home" class="right carousel-control" data-slide="next">
 +
        <span class="icon-next"></span>
 +
      </a>
  
−
 
−
    <div class="third-section">
 
−
        <div class="container">
 
−
            <div class="row">
 
−
                <div class="col-md-6">
 
−
                    <h2>Thinking Binary</h2>
 
−
                    <p>Boolean Logic is the bedrock of the digital revolution. Developed by George Boole in the mid-19th century, it is based on a simple set of values: 0 (“FALSE”) or 1 (“TRUE”).  In computers, all information is represented by strings of 0s and 1s - multiple representations of binary digits or “Bits”. Bits are physically implemented by two-state devices named transistors. The assembling of transistors forms logic gates - which enables digital circuits to exhibit incredibly complex behaviours in the everyday objects that surround us.</p>
 
−
                </div>
 
−
            </div>
 
−
            <div class="row">
 
−
                <div class="col-md-6">
 
−
                    <h2>A Biological Computer</h2>
 
−
                    <p>Creating customizable logic gates in living cells holds the promise of revolutionizing our ability to dictate the behaviour of organism and the way they react to distinct molecular cues. This involves designing logic circuits capable of linking the many genetic regulatory networks responsible for biologic operations.  An ideal genetic logic device should therefore be modular and reusable, enabling scientists to implement any complex logic functions in multiple biological systems. Our goal this summer is to achieve this by using gRNA-dCas9 combinations as the  biological equivalent of the wires that connect the different components of electric circuits.<br>
 
−
                    Cas9 (CRISPR associated protein 9) is an RNA-guided DNA endonuclease enzyme that can target and cleave any DNA sequence complementary to its guide RNA (gRNA). Our logic gates will be based upon a derivative of this technology, the catalytically “dead” Cas9 (dCas9) that lacks the ability to cleave DNA. dCas9’s has the very interesting property of acting as  programmable transcription regulator. It it can act either as repressor by preventing the binding of the RNA polymerase (RNAP) to the targeted DNA or as an activator when fused to a polymerase recruiting element (the omega subunit of RNAP in E. Coli and VP64 in Yeast).</p>
 
−
                </div>
 
−
                <div class="col-md-6">
 
−
                    <h2>The bio part</h2>
 
−
                    <p>To create a modular system based on these elements, we will design two different plasmids: a gate array and a linker. The gate array will contain a predefined set of logic gates. The code linking the different gates will be written on the customizeable linker plasmid. <br>
 
−
                    With this project, we hope to help create robust biologically based digital devices by successfully implementing modular orthogonal logic gates in living organisms. The applications of logic circuits implemented in a biological context are vast and range from the creation of smart cells able to monitor their environment for external stimuli to new forms of cellular therapeutics with improved in vivo targeting and curing. </p>
 
−
                </div>
 
−
            </div>
 
−
        </div>
 
 
     </div>
 
     </div>
  
 +
  <section id="features">
 +
    <div id="Tour-section">
 +
      <img src="https://static.igem.org/mediawiki/2015/f/f6/EPF_Lausanne_Home_Button.png" alt="Take a tour" usemap="#TakeTour">
  
−
    <div class="fourth-section">
+
      <map name="TakeTour">
−
         <div class="container">
+
         <area shape="circle" coords="162,250,105" alt="Project" href="https://2015.igem.org/Team:EPF_Lausanne/Project/Description">
−
            <div class="row">
+
        <area shape="circle" coords="452,120,95" alt="Design" href="https://2015.igem.org/Team:EPF_Lausanne/Design">
−
                <div class="col-md-12 text-center">
+
        <area shape="circle" coords="1002,160,110" alt="Results" href="https://2015.igem.org/Team:EPF_Lausanne/Results">
−
                    <h2>Still under construction</h2>
+
        <area shape="circle" coords="642,360,160" alt="Tour" href="https://2015.igem.org/Team:EPF_Lausanne/Project/Description">
−
                </div>
+
        <area shape="circle" coords="962,540,105" alt="Modeling" href="https://2015.igem.org/Team:EPF_Lausanne/Modeling">
−
            </div>
+
        <area shape="circle" coords="352,560,120" alt="Practices" href="https://2015.igem.org/Team:EPF_Lausanne/Practices">
−
        </div>
+
        <area shape="circle" coords="1154,477,50" alt="meetus" href="https://2015.igem.org/Team:EPF_Lausanne/Team/Meet">
 +
      </map>
 
     </div>
 
     </div>
  
−
   
+
  </section>
−
 
+
−
    <footer class="site-footer">
+
−
        <div class="container">
+
−
            <div class="row">
+
−
                <div class="col-md-12 text-center">
+
−
                    <ul class="social">
+
−
                        <li class="twitter"><a href="#" class="fa fa-twitter"></a></li>
+
−
                        <li class="facebook"><a href="#" class="fa fa-facebook"></a></li>
+
−
                        <li class="rss"><a href="#" class="fa fa-rss"></a></li>
+
−
                        <li class="linkedin"><a href="#" class="fa fa-linkedin"></a></li>
+
−
                    </ul>
+
−
                </div>
+
−
            </div>
+
−
        </div>
+
−
    </footer>
+
−
 
+
−
    <script src="https://2015.igem.org/Team:EPF_Lausanne/Test/js/jquery?action=raw&amp;ctype=text/js"></script>
+
−
    <script src="https://2015.igem.org/Team:EPF_Lausanne/Test/js/bootstrap?action=raw&amp;ctype=text/js"></script>
+
−
    <script src="https://2015.igem.org/Team:EPF_Lausanne/Test/js/plugins?action=raw&amp;ctype=text/js"></script>
+
−
    <script src="https://2015.igem.org/Team:EPF_Lausanne/Test/js/main?action=raw&amp;ctype=text/js"></script>  
+
−
   
+
 
</body>
 
</body>
 
</html>
 
</html>
 +
{{:Team:EPF_Lausanne/Test/footer}}

Latest revision as of 11:07, 16 September 2015

EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits

Take a tour Project Design Results Tour Modeling Practices meetus
EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits

NOT PROOFREAD