Difference between revisions of "Team:Technion Israel/Project/Secretion"
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| − | <a href="https://2015.igem.org/Team:Technion_Israel/Project/ | + | <a href="https://2015.igem.org/Team:Technion_Israel/Project/Secretion">Secretion</a> |
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<h3>Why <i>Bacillus subtilis</i>?</h3> | <h3>Why <i>Bacillus subtilis</i>?</h3> | ||
| − | <p>When considering which type of bacteria to use for our cloning, we researched the natural | + | <p>When considering which type of bacteria to use for our cloning, we researched the natural microbiome of the scalp. We found that <i>Bacillus subtilis</i> is prevalent on our scalp. <sup><a href="#fn1" id="ref1">1</a></sup></p> |
<p><i>B.subtilis</i> is a gram-positive, rod-shaped bacterium found on skin, in the digestive tract, in epithelial wounds, on extremities of the human body, in livestock and in soil. <sup><a href="#fn2" id="ref2">2</a></sup></p></p> | <p><i>B.subtilis</i> is a gram-positive, rod-shaped bacterium found on skin, in the digestive tract, in epithelial wounds, on extremities of the human body, in livestock and in soil. <sup><a href="#fn2" id="ref2">2</a></sup></p></p> | ||
| − | <p>Today, the bacterium is used commercially in skin care products, foods for human consumption, antibiotic substitutes, etc. | + | <p>Today, the bacterium is used commercially in skin care products, foods for human consumption, antibiotic substitutes, etc. <sup><a href="#fn2" id="ref2">2</a></sup></p></p> |
<p><i>B.subtilis</i> has also the ability to secrete various proteins. </p> | <p><i>B.subtilis</i> has also the ability to secrete various proteins. </p> | ||
<p>For those reasons, we chose <i>B.subtilis</i> as our chassis organism for excreting the 3α-HSD enzyme of interest.</p> | <p>For those reasons, we chose <i>B.subtilis</i> as our chassis organism for excreting the 3α-HSD enzyme of interest.</p> | ||
<p>In our lab, we used strain PY79 wild type which we received from Dr. Avigdor Eldar’s lab at Tel Aviv University.</p> | <p>In our lab, we used strain PY79 wild type which we received from Dr. Avigdor Eldar’s lab at Tel Aviv University.</p> | ||
| − | <h2>Expression</h2> | + | <h2>Expression in <i>B. subtilis</i></h2> |
<p> As stated above, our goal was to express the 3α-HSD protein, originally from rat liver, and check whether it is able to fold properly and break down DHT.</p> | <p> As stated above, our goal was to express the 3α-HSD protein, originally from rat liver, and check whether it is able to fold properly and break down DHT.</p> | ||
<p>For this purpose, we cloned 3α-HSD into <i>B.subtilis</i> under the inducible P<sub>hyper-spank</sub> promoter.</p> | <p>For this purpose, we cloned 3α-HSD into <i>B.subtilis</i> under the inducible P<sub>hyper-spank</sub> promoter.</p> | ||
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<p>The plasmid also contains lacI gene for the inducible promoter P<sub>hyper-spank</sub>, making our inserted genes inducible with the addition of IPTG.</p> | <p>The plasmid also contains lacI gene for the inducible promoter P<sub>hyper-spank</sub>, making our inserted genes inducible with the addition of IPTG.</p> | ||
<p>In the lab, we inserted our gene in the multiple cloning site between the NheI and SalI restriction sites, which can be seen in the basic pDR111 plasmid below.</p> | <p>In the lab, we inserted our gene in the multiple cloning site between the NheI and SalI restriction sites, which can be seen in the basic pDR111 plasmid below.</p> | ||
| − | < | + | <img class="img_center" src= "https://static.igem.org/mediawiki/2015/6/62/Technion_Israel_2015_project_bacillus_pdr111.png" alt="secretion plasmid"/> |
| − | + | <p>The simple, planned circuit of the gene in the shuttle vector is featured in the image below.</p> | |
| − | + | <img class= "img_center" src= "https://static.igem.org/mediawiki/2015/e/ee/Technion_Israel_2015_project_bacillus_circuit-gene.png" alt="3a-HSD on pDR111"/> | |
| − | <p> | + | |
| − | <img class= "img_center" src= "https://static.igem.org/mediawiki/2015/e/ee/Technion_Israel_2015_project_bacillus_circuit-gene.png" alt="3a-HSD on pDR111 | + | |
<h2>Secretion</h2> | <h2>Secretion</h2> | ||
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<p> The circuit can be seen below.</p> | <p> The circuit can be seen below.</p> | ||
| − | <img | + | <img class="img_center" src="https://static.igem.org/mediawiki/2015/9/90/Technion_Israel_2015_project_bacillus_circuit-gene-sp.png" alt="3a-HSD on pDR111 with SP" /> |
| − | <p>Click here to see our results.</p> | + | |
| + | <p>In order to predict the target gene expression and secretion, we cloned mCherry into <i>B.subtilis</i>, since it is easier to track reporter genes.</p> | ||
| + | <p>Click <a href="https://2015.igem.org/Team:Technion_Israel/Project/Results#secretion_results" target="_blank">here</a> to see our results.</p></br> | ||
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| + | <a href="https://2015.igem.org/Team:Technion_Israel/Project/Overview">Previous<small>(Overview)</small></a> | ||
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| + | <a href="https://2015.igem.org/Team:Technion_Israel/Project/Expression">Next<small>(Expression)</small></a> | ||
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<hr></hr> | <hr></hr> | ||
Latest revision as of 16:52, 18 September 2015
Secretion
Introduction
Aim
To express and secrete our target gene, 3α-hydroxysteroid dehydrogenase (3α-HSD), in and from bacteria. To prove activity of the secreted gene in breaking down dihydrotestosterone (DHT).
Why Bacillus subtilis?
When considering which type of bacteria to use for our cloning, we researched the natural microbiome of the scalp. We found that Bacillus subtilis is prevalent on our scalp. 1
B.subtilis is a gram-positive, rod-shaped bacterium found on skin, in the digestive tract, in epithelial wounds, on extremities of the human body, in livestock and in soil. 2
Today, the bacterium is used commercially in skin care products, foods for human consumption, antibiotic substitutes, etc. 2
B.subtilis has also the ability to secrete various proteins.
For those reasons, we chose B.subtilis as our chassis organism for excreting the 3α-HSD enzyme of interest.
In our lab, we used strain PY79 wild type which we received from Dr. Avigdor Eldar’s lab at Tel Aviv University.
Expression in B. subtilis
As stated above, our goal was to express the 3α-HSD protein, originally from rat liver, and check whether it is able to fold properly and break down DHT.
For this purpose, we cloned 3α-HSD into B.subtilis under the inducible Phyper-spank promoter.
pDR111 is a shuttle vector for E.coli and B.subtilis. When in E.coli, an ampicillin resistance gene is expressed and when in B.subtilis, a spectinomycin resistance is expressed. The plasmid contains homologous regions with the B. subtilis genome, enabling gene introduction by recombination into the nonessential amyE locus of the chromosomal DNA as a single copy.3
The plasmid also contains lacI gene for the inducible promoter Phyper-spank, making our inserted genes inducible with the addition of IPTG.
In the lab, we inserted our gene in the multiple cloning site between the NheI and SalI restriction sites, which can be seen in the basic pDR111 plasmid below.
The simple, planned circuit of the gene in the shuttle vector is featured in the image below.
Secretion
Secretion of the 3α-HSD enzyme was an extremely important component of our project. The secretion would enable the bacteria to live on the consumer’s scalp, as opposed to being lysed in order to recover the enzyme. This could reduce the production costs and improve product efficiency over time.
As mentioned previously, B. subtilis, as well as some other gram-positive bacteria, has protein secretion mechanisms and regularly secretes proteins such as various proteases.
In order to engineer the bacteria to meet our purposes, we fused our target gene coding for 3α-HSD to the signal peptide (SP) for the gene aprE, which encodes to extracellular alkaline-serine protease (subtilisin E), the most abundant protease secreted to the medium in wildtype B. subtilis. 4
By doing so, the 3α-HSD enzyme could be recognized by the secretion system of the protease and could be excreted into the extracellular medium.
The circuit can be seen below.
In order to predict the target gene expression and secretion, we cloned mCherry into B.subtilis, since it is easier to track reporter genes.
Click here to see our results.
1. Roia, F. C.; Vanderwyk, R. W.:Resident Microbial Flora of the Human Scalp and its Relationship to Dandruff. Journal of The Society of Cosmetic Chemists. 1969, 20, 113-134. 2. Gonzales, D. J.; Haste, N. M.; Hollands, A.; Fleming, T. C.; Hamby, M.; Pogliano, K.; Nizet, V.; Dorrestein, P.C.: Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry. Microbiology 2011, 157, 24985-2492. 3. Härtle, B.; Wehrl, W.; Wiegert, T.; Homuth, G.; Schumann, W.: Development of a New Integration Site within the Bacillus subtilis Chromosome and Construction of Compatible Expression Cassettes. Journal of Bacteriology. 2001, 183, 2696-2699. 4. Antelmann, H.; Tjalsma, H.; Voigt, B.; Ohlmeier, S.; Bron, S.; Van Djil, Jan Maarten.; Hecker, M.: A Proteomic View on Genome-Based Signal Peptide Predictions. Genome Research. 2001, 11, 1484-1502.