Difference between revisions of "Team:Technion HS Israel/Software"

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<h2>Software</h2>
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<h1><font color="#008080"> Software Overview</font></h1 >
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<h2>Introduction</h2>
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<p>In this part of the site we present our software products. We believe that software tools can be useful for both analyzing a biological system and doing the preliminary research. Therefore we on one hand wrote a simulation program in MATLAB and a search engine and a constants database. </p>
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<h2>The iGEM Explorer</h2>
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<h4>Note</h4>
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<p>We have built a previous iGEM search engine, with the aim of being comprehensive, user friendly and useful. Read more <a href="https://2015.igem.org/Team:Technion_HS_Israel/Practices/SearchEngine"> here</a>.
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<p>In order to be considered for the <a href="https://2015.igem.org/Judging/Awards#SpecialPrizes">Best Software Tool award</a>, you must fill out this page.</p>
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Due to technical limitation on the iGEM server, we store the search engine on an external server. Link to the search engine: <a href="http://beam.to/igemExplorer">here</a>.</p>
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<h2>The Constants Database</h2>
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<p>In order to make the constants that iGEM teams have collected over the years more accessible, we've created an automated constants database. You can play with it <a href="https://2015.igem.org/Team:Technion_HS_Israel/Constants_Database">here</a>. Its documentation available <a href="https://2015.igem.org/Team:Technion_HS_Israel/LINK_TO_EXPLANATION">here</a>.</p>
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<h2>The Simulation Program</h2>
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<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honour such "nuggets" of computational work.</p>
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<p>This product is more about learning than about anything else. We've wrote from scratch a program in MATLAB to simulate our system numerically. It features a GUI we've written and in its core there is a numerical integrator algorithm we've written from scratch. The experience and the understanding we've gained are invaluable. Read more <a href="https://2015.igem.org/Team:Technion_HS_Israel/Software/Simulation"> here</a>.</p>
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If you are working on software as your main project, please join the software track. If you are creating software as an addition to your main project, please apply for this award.
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Here are a few examples from previous teams:
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<li><a href="https://2013.igem.org/Team:TU-Munich/Results/Software">TU Munich 2013</a></li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Software">Heidelberg 2014</a></li>
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<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">Aachen 2014</a></li>
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Latest revision as of 20:27, 18 September 2015

Technion 2015 HS Team's Wiki

Software Overview

Introduction

In this part of the site we present our software products. We believe that software tools can be useful for both analyzing a biological system and doing the preliminary research. Therefore we on one hand wrote a simulation program in MATLAB and a search engine and a constants database.

The iGEM Explorer

We have built a previous iGEM search engine, with the aim of being comprehensive, user friendly and useful. Read more here. Due to technical limitation on the iGEM server, we store the search engine on an external server. Link to the search engine: here.

The Constants Database

In order to make the constants that iGEM teams have collected over the years more accessible, we've created an automated constants database. You can play with it here. Its documentation available here.

The Simulation Program

This product is more about learning than about anything else. We've wrote from scratch a program in MATLAB to simulate our system numerically. It features a GUI we've written and in its core there is a numerical integrator algorithm we've written from scratch. The experience and the understanding we've gained are invaluable. Read more here.