Difference between revisions of "Team:Bielefeld-CeBiTec/Project/HeavyMetals"

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<div id="nickel" style="display: none">
 
<div id="nickel" style="display: none">
 
     <h3>Occurrence</h3>
 
     <h3>Occurrence</h3>
     <p>The amount of natural occurring nickel is quite low even if it is an element of the earth’s crust. Therefore small amounts of it are found in food, water, soil and air. Nickel concentration in drinking water is normally less than 0.02 mg/l, although trough releases from taps and fittings the nickel may accumulate to concentrations up to 1 mg/l. There may be higher concentrations in drinking-water in special cases of release from natural or industrial nickel deposits in the ground. Through unintended release the concentration can be higher than the guideline value of 0.07 mg/l (Guidelines for Drinking-water Quality, Fourth Edition)  
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     <p>The amount of natural occurring nickel in comparison of other heavy metals is quite low even if it is an element of the earth’s crust. Therefore small amounts of it are found in food, water, soil and air. Nickel concentration in drinking water is normally less than 0.02 mg/L, although through releases from taps and fittings the nickel may accumulate to concentrations up to 1 mg/L. In special cases of release from natural or industrial nickel deposits in the ground, there may be higher concentrations in drinking-water. Through unintended release the concentration can be higher than the guideline value of 0.07 mg/l (WHO: Guidelines for Drinking-water Quality, Fourth Edition)  
 
</p>
 
</p>
 
      
 
      
 
  <h3>Health effects</h3>
 
  <h3>Health effects</h3>
     <p>Even though nickel is essential for mammals and a part of human nutrition it may cause dermatitis as well as itching of fingers, hands and forearms in some people who had long term skin contact. The main source of nickel exposure is food or water but most people have contact to nickel trough everyday products as jewelry or stainless steel dishware or trough smoking tobacco (US; EPA <i>et al.</i>, 2013).In Germany most drinking water pollutions by nickel happen in the last meters of the plumbing system. Wrong tapware is the main source of nickel contamination in drinking water (kreusche)</p>
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     <p>EEven though nickel is essential for mammals and a part of human nutrition, it may cause dermatitis as well as itching of fingers, hands and forearms by some people who had long term skin contact. The main source of nickel exposure is food or water but most people have contact to nickel trough everyday products as jewelry or stainless steel dishware or trough smoking tobacco(US; EPA <i>et al.</i>, 2013). In Germany most drinking water pollutions by nickel happen in the last meters of the plumbing system. Wrong tapware is the main source of nickel contamination in drinking water.
  
 
  <h3>Detection</h3>
 
  <h3>Detection</h3>
     <p>The two most commonly used analytical methods for nickel in water are atomic absorption spectrometry and inductively coupled plasma atomic emission spectrometry Inductively coupled plasma atomic emissionspectroscopy is used for the determination of nickel detection limit of about 10 μg/litre (ISO, 1996). Flame atomic absorption spectrometry is suitable in the range of 0.5–100 μg/litre (ISO, 1986). A limit of detection of 0.1 μg/L can be achieved using inductively coupled plasma mass spectrometry. Alternatively, electrothermal atomic absorption spectrometry can be used. (cavillona 2005)</p>
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     <p>The two most commonly used analytical methods for nickel in water are atomic absorption spectrometry and inductively coupled plasma atomic emission spectrometry Inductively coupled plasma atomic emission spectroscopy is used for the determination of nickel detection limit of about 10 μg/L (ISO, 1996). Flame atomic absorption spectrometry is suitable in the range of 0.5–100 μg/L (ISO, 1986). A limit of detection of 0.1 μg/L can be achieved using inductively coupled plasma mass spectrometry. Alternatively, electrothermal atomic absorption spectrometry can be used. (cavillona 2005)</p>
 
      
 
      
 
  <h3>Our nickel biosensor</h3>
 
  <h3>Our nickel biosensor</h3>
     <p>For our nickel sensor system we used the rcn-operon from E. coli which codes for a nickel- and cobalt-efflux system, which is highly sensitive to nickel . If Ni<sup>2+</sup>-ions bind to the repressor RcnR, it cannot attach to DNA and RcnA the nickel responsive promoter is activated. In the absence of nickel or cobalt, RcnR is bound to RcnR operator and blocks RcnA transcription. (EPA <i>et al.</i>, 2013; Blaha <i>et al.</i>, 2011; Iwig <i>et al.</i>, 2006) Our output signal works trough fluorescence.</p>
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     <p>For our nickel sensor system we used the rcn-operon from <i>E. coli</i> which encodes for a nickel- and cobalt-efflux system with a high sensitivity to nickel.
 +
In the absence of Nickel the respressor RcnR regonizes the operator site and blocks transcription of the operon, while in the presence of nickel it is abadoned due to a conformational change.
 +
Our sensor system combines <i>rcnR</i> under the control of a constitutive promoter and the PrcnA promoter  for the nickel depending expression of sfGFP.  
 +
If Ni<sup>2+</sup>-ions bind to the repressor RcnR, it cannot attach to DNA and RcnA the nickel responsive promoter is activated. In the absence of nickel or cobalt, RcnR is bound to RcnR operator and blocks RcnA transcription. (EPA <i>et al.</i>, 2013; Blaha <i>et al.</i>, 2011; Iwig <i>et al.</i>, 2006) Our output signal works through fluorescence.</p>
 
      
 
      
 
  <h3>References</h3>
 
  <h3>References</h3>

Revision as of 22:49, 18 September 2015

iGEM Bielefeld 2015


Heavy Metals

We detect several heavy metals with a single test strip.


Heavy metals have been part in a lot of iGEM projects over the last years, so why work with them again?


Heavy metals are still a major problem, therefore they have been part in a lot of iGEM projects. There are a lot of concepts to create heavy metal sensors. Some of them work extrodenary well. But most of these sensors never made it to real world applications. We want to change that. We aim to make a use of well characterized sensors as well as concepts and new ideas. All this sensor systems shell work on the same principle, so that we can use them to create a modular easy to handle paper based cell free test strip for detection of more substances, heavy metals in this case, in parallel.

"In my opinion the test stripe system has great potential in the field of monitoring contamination in industrial wastewater. It`s a fast and easy available system for qualitative control of several heavy metals.” (Dr.rer.nat. Andreas Bermpohl, manager of biotec GmbH)


survey result

Why heavy metals?
Heavy metals are part of earth’s crust and therefore natural occurring in our environment. (Heavy Metals - Lenntech) In low doses some of them as copper or nickel are even essential trace elements for animals and humans (Rashmi Verma and Pratima Dwivedi 2013). A major problem is their bioaccumulation which leads to toxicity and long term effects which include fatal diseases as cancer (Martin et al. 2009) Parkinson or Alzheimer’s disease (Gaggelli et al. 2006).

survey result

Which heavy metals?
The heavy metal sensors we chose for detection are specific to arsenic, copper, chromium, lead, mercury and nickel. Their concentrations in drinking water are regulated by the WHO, because of their immediate and longtime health effects.

survey result

Our biosensors
We decided to work with already existing, well-characterized sensors as well as with established but not well-characterized concepts of other teams and moreover create new sensor systems. Therefore, we established a basic construction plan for our sensor systems, which is based on a promoter with a specific operator region in front of a super folder GFP (sfGFP), that was used for detection trough fluorescence analysis. In addition we used fitting activators or repressors for our inducible promoters under the control of BBa_K608002 which consists of a constitutive promoter with a strong ribosomal binding site (RBS). We combined these into a device consisting of constitutive promoter and RBS reverse and the promoter and operator region in front of the sfGFP. So we have repressor or activator constitutively express but reverse, to minimize background transcription of the inducible system in front of our heavy metal promoter operator system. In addition, these devices are optimized for the usage in a cell free protein synthesis (CFPS). This is the basis for the development of cell free biosensors on a test strip, that can be used to detect several heavy metals at one in the open field.




Click on the test strip for more information about the heavy metals and how they can be detected:

teststrip