Difference between revisions of "Team:Jilin China/Modeling"

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<h2> Modeling</h2>
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<p><big><span style="font-size:12px;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>At first, we used UV absorption spectrum method with ultraviolet light, 660nm, to detect population of E.coli. As a result, due to the limited culture medium, the amount of bacteria would descend after 1.5h breed. However, most of the time, what determines the amount of E.coli is not the nutrient, but other conditions, such as living space or temperature. Because researchers can ignore the nutrient by adding more fresh culture medium. Thus, we picked up 11 points between 0 to 1.5h to structure growth curve (Figure 1) and aborted other points. </big></p>
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<p><big>Figure 1. Growth Curve of E.coli within 0.3mM Formaldehyde.</big></p>
  
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<h4>Note</h4>
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<p>In order to be considered for the <a href="https://2015.igem.org/Judging/Awards#SpecialPrizes">Best Model award</a>, you must fill out this page.</p>
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<p><big><span style="font-size:12px;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>Next step, we concentrated on the effect of formaldehyde absorption in first 1.5h growth curve. The results are as follows (Figure 2) (Figure 3). </big><p>
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<p><big>Figure 2. Relative Content of Formaldehyde Absorption. </big><p>
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<p><big>Figure 3. Relative Content of Formaldehyde Absorption.</big></p>
  
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<p><big><span style="font-size:12px;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>Because it is hard to distinguish the degree of curvature in this curve by the human eye, we used a type of mathematical software to conduct it and obtained a derivative of each point, which could represent the speed of formaldehyde absorption (Figure 4) (Figure 5).</big></p>
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<p><big>Figure 4. Derivative.</big></p>
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<p><big>Figure 5. Derivative.</big></p>
  
<p>Mathematical models and computer simulations provide a great way to describe the function and operation of BioBrick Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior in conjunction with experiments in the wetlab.</p>
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<p><big><span style="font-size:12px;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</span>We can draw a conclusion according to Figure 3 and Figure 4 that before 1h the speed of formaldehyde absorption is increasing relatively dramatically compared with that in later half an hour. When it comes to the time between 1 to 1.5h, the speed maintains a steady level at 0.12. Overall, these features verify the growth curve (Figure 1) accurately, which means that 0-1h speed is due to increase of E.coli population, and 1-1.5h speed is because of steady amount of bacteria. </big></p>
  
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Here are a few examples from previous teams:
 
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<li><a href="https://2014.igem.org/Team:ETH_Zurich/modeling/overview">ETH Zurich 2014</a></li>
 
<li><a href="https://2014.igem.org/Team:Waterloo/Math_Book">Waterloo 2014</a></li>
 
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Latest revision as of 02:23, 19 September 2015



modeling

      At first, we used UV absorption spectrum method with ultraviolet light, 660nm, to detect population of E.coli. As a result, due to the limited culture medium, the amount of bacteria would descend after 1.5h breed. However, most of the time, what determines the amount of E.coli is not the nutrient, but other conditions, such as living space or temperature. Because researchers can ignore the nutrient by adding more fresh culture medium. Thus, we picked up 11 points between 0 to 1.5h to structure growth curve (Figure 1) and aborted other points.


Figure 1. Growth Curve of E.coli within 0.3mM Formaldehyde.



      Next step, we concentrated on the effect of formaldehyde absorption in first 1.5h growth curve. The results are as follows (Figure 2) (Figure 3).


Figure 2. Relative Content of Formaldehyde Absorption.

Figure 3. Relative Content of Formaldehyde Absorption.


      Because it is hard to distinguish the degree of curvature in this curve by the human eye, we used a type of mathematical software to conduct it and obtained a derivative of each point, which could represent the speed of formaldehyde absorption (Figure 4) (Figure 5).


Figure 4. Derivative.

Figure 5. Derivative.


      We can draw a conclusion according to Figure 3 and Figure 4 that before 1h the speed of formaldehyde absorption is increasing relatively dramatically compared with that in later half an hour. When it comes to the time between 1 to 1.5h, the speed maintains a steady level at 0.12. Overall, these features verify the growth curve (Figure 1) accurately, which means that 0-1h speed is due to increase of E.coli population, and 1-1.5h speed is because of steady amount of bacteria.