Difference between revisions of "Team:USTC"

 
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<h3>Project Description</h3>
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<p>In China and other developing countries, abusing antibiotics causes severe antibiotic substances contamination and antibiotic resistance issues. According to latest professional evaluation from Chinese Academy of Science(CAS), China used 162,000 tons of antibiotic substances for human(48%) and animal(52%) in 2013, which is tenfold usage of USA and antibiotic substances in high concentration can be detected from many river basins that may potentially harmful to public health and environment.</p>
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<p>Therefore, this year, we USTC developed a novel, original and portable device, which is able to determine trace antibiotics concentration in natural water bodies. We called it CACCI(characterization of trace antibiotics concentration based on chemotaxis and interference).</p>
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<p>We firstly construct an antibiotics sensing circuit with antibiotic sensible promoters, quorum sensing molecules and logic amplification parts to test the efficiency of our design. Genetic modification on bacteria including overexpression of exogenous porin or viroporin and inhibition of efflux system using CRISPR will be implemented to condense antibiotics in bacterial bodies.</p>
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<p>Then we will establish our CACCI based on genetically engineered chemotaxis circuit and amplification part. Bacteria will be designed with a special transmembrane protein with rare amino acid so that bacteria can be put on a polymer membrane that is able to covalently bind to bacteria with alteration. Thus, slight membrane elastic deformation will be accurately detected by interference and we will use Newton Ring to read out the concentration of antibiotics in sample. Finally CACCI will be developed with a traditional dial and a friendly GUI available for personnel without much professional knowledge and complicated training.</p>
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<p>With our CACCI, we hope, antibiotic contamination issue would be treated in specific methods.</p>
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<h3>Hey, contact us:<br/></h3>
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<a href="http://weibo.com/3929719655/fans?topnav=1&wvr=6&mod=message&need_filter=1">Weibo</a><br/>
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<h2> Welcome to iGEM 2015! </h2>
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<p>Your team has been approved and you are ready to start the iGEM season! </p>
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<h4>Before you start: </h4>
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<p> Please read the following pages:</p>
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<li> <a href="https://2015.igem.org/Requirements">Requirements page </a> </li>
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<li> <a href="https://2015.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
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<div class="right">
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  <ul id="menu" hidden>
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    <li data-menuanchor="welcomePage" class="active"><a href="#welcomePage">Welcome</a></li>
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    <li data-menuanchor="introPage"><a href="#introPage">Brief Intro</a></li>
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    <li data-menuanchor="constitutionPage"><a href="#constitutionPage">Constitutions</a></li>
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    <li data-menuanchor="tutorialPage"><a href="#tutorialPage">Tutorials</a></li>
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    <li data-menuanchor="navigationsPage" data-hover="true" data-activates="navi-dropdown" data-gutter="-16" data-beloworigin="true" class="dropdown-button"><a href="#navigationsPage">Navigations</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Description" class="waves-effect waves-light">Project</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Modeling" class="waves-effect waves-light">Modeling</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Results" class="waves-effect waves-light">Results</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Achievements" class="waves-effect waves-light">Achievements</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Measurement" class="waves-effect waves-light">Measurement</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Software" class="waves-effect waves-light">Software</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Parts" class="waves-effect waves-light">Parts</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Tutorials" class="waves-effect waves-light">Tutorials</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Notebook" class="waves-effect waves-light">Notebook</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Safety" class="waves-effect waves-light">Safety</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Practices" class="waves-effect waves-light">Policy&Practices</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Team" class="waves-effect waves-light">Team</a></li>
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  <li><a href="https://2015.igem.org/Team:USTC/Attributions" class="waves-effect waves-light">Attributions</a></li>
 
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<h4> Styling your wiki </h4>
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<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
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<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
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      <ul class="slides">
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        <li> <img src="https://static.igem.org/mediawiki/2015/2/22/USTC-index-background-1.jpg"> </li>
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        <li> <img src="https://static.igem.org/mediawiki/2015/6/6e/USTC-index-background-2.jpg"> </li>
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        <li> <img src="https://static.igem.org/mediawiki/2015/a/a5/USTC-index-background-3.jpg"> </li>
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        <li> <img src="https://static.igem.org/mediawiki/2015/6/67/USTC-index-background-4.jpg"> </li>
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    <div class="container">
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      <div class="check-inview fadeup">
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        <h1 class="white-text"><b>Nanomachine Detecting Microbiotics</b></h1> </div>
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      <div class="check-inview fadeup">
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        <h2>In the beginning, we extracted antibiotics, assuming it to be Perseus and it was so. Time going, we found antibiotics turned out to be Ares.</h2>
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      <div class="check-inview fadeup center" style="text-align:center;">
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        <a href="#introPage">
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          <h2 class="white-text">Continue</h2><img src="https://static.igem.org/mediawiki/2015/1/1d/USTC-index-Down.png" style="width: 60px;" /></a>
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          <h5 class="white-text">In natural environment, many antibiotic substances are emitted into river in their active state, which caused tremendously challenges on human health and environment. Thus, this year we USTC develop NDM, a hardware trying to detect those molecules and hold back this situation. Advantages of NDM including:  </h5>
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          <figure><img src="https://static.igem.org/mediawiki/2015/b/b1/USTC-index-fast.png"></figure>
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          <div>
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              <h5>Rapid</h5>
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              <p>Detection won’t be based on fluorescence signal,  however a brand new way! Then, how much time does a detection assay cost? 1 day? 100 min? Answer is 100 SECONDS!</p>
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        <div class="col s4 check-inview fadeup">
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          <figure><img src="https://static.igem.org/mediawiki/2015/1/18/USTC-index-toolbox.png"></figure>
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          <div>
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              <h5>Convenient</h5>
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              <p>NDM is portable for people to operate it, and we developed a friendly GUI for better experience. Moreover, we will package bacteria into powder for iGEMers!</p>
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        <div class="col s4 check-inview fadeup">
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          <figure><img src="https://static.igem.org/mediawiki/2015/c/cd/USTC-index-gear.png"></figure>
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          <div>
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              <h5>Compatible</h5>
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              <p>NDM is compatible for everyone to engineer. We hope genetic modification on device level would expand.  After all, ‘M’ in NDM means much more than microbiotics!</p>
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          </div>
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      <div class="check-inview fadeup center" style="text-align:center;">
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          <h4 class="white-text">Constitutions of NDM</h4>
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      <div class="row">
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        <div class="col s2"><img src="https://static.igem.org/mediawiki/2015/c/c6/USTC-index-mod-bact.png"></div>
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        <div class="col s2"><img src="https://static.igem.org/mediawiki/2015/1/1d/USTC-index-film.png"></div>
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        <div class="col s2"><br/><img src="https://static.igem.org/mediawiki/2015/c/c4/USTC-index-hako.png" style="z-index: 5;"></div>
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        <div class="col s2"><img src="https://static.igem.org/mediawiki/2015/9/9c/USTC-index-optical-path.png"></div>
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        <div class="col s2"><img src="https://static.igem.org/mediawiki/2015/d/da/USTC-index-gui.png"></div>
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      </div>
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      <div class="row">
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        <div class="col s2"><h5>CACCI</h5><p>Programmed bacteria to detect chemicals whatever you want</p></div>
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        <div class="col s2"><h5>Film</h5><p>Change the movement of bacterial to deformation of film.</p></div>
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        <div class="col s2"><h5>SPRING</h5><p>The main body NDM, platform provided for experiment.</p></div>
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        <div class="col s2"><h5>Optical path</h5><p>Detect the deformation by Michelson Interference.</p></div>
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        <div class="col s2"><h5>GUI</h5><p>Provide a better experience for users.</p></div>
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      </div>
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      <div style="text-align:center;">
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        <a href="#tutorialPage">
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          <img src="https://static.igem.org/mediawiki/2015/1/1d/USTC-index-Down.png" style="width: 60px;" /></a>
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  <div class="fullpagesection blue darken-3" data-anchor="tutorialPage" id="tutorial">
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        <div class="col s12">
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          <h4 class="white-text">Tutorials: Study NDM Right Now!</h4>
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          <figure>
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            <a href="https://2015.igem.org/Team:USTC/Tutorials#Instructional-Video"><img src="https://static.igem.org/mediawiki/2015/3/31/USTC-index-video.png"></a>
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          </figure>
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              <h5>Video</h5>
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              <p>Want to know how to operate NDM? Watch it at here!</p>
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            <a href="https://2015.igem.org/Team:USTC/Tutorials#Instruction-manual"><img src="https://static.igem.org/mediawiki/2015/7/79/USTC-index-ins.png"></a>
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          </figure>
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          <div>
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              <h5>Manual</h5>
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              <p>This manual is a convenient guidebook for you when operating NDM in field! Download it at here!</p>
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          <figure>
 +
            <a href="https://2015.igem.org/Team:USTC/Tutorials#Make-Your-Own"><img src="https://static.igem.org/mediawiki/2015/5/54/USTC-index-DIY.png"></a>
 +
          </figure>
 +
          <div class="card hoverable">
 +
              <h5>DIY</h5>
 +
              <p>Want to make your own NDM? Come and join us at here!</p>
 +
          </div>
 +
        </div>
 +
      </div>
 +
      <div class="check-inview fadeup center" style="text-align:center;">
 +
        <a href="#navigationsPage">
 +
          <img src="https://static.igem.org/mediawiki/2015/1/1d/USTC-index-Down.png" style="width: 60px;" /></a>
 +
      </div>
 +
    </div>
 +
  </div>
 +
  <div class="fullpagesection" data-anchor="navigationsPage" data-delay="500" id="navi">
 +
    <div class="container">
 +
      <div class="row">
 +
        <div class="col s3 navi-inview fadeup" id="nav1">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Description">
 +
                <img src="https://static.igem.org/mediawiki/2015/f/f1/USTC-index-Project.png" onclick>
 +
                <span class="white-text">Project</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav2">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Modeling">
 +
                <img src="https://static.igem.org/mediawiki/2015/b/b4/USTC-index-Modeling.png">
 +
                <span class="white-text">Modeling</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav3">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Results">
 +
                <img src="https://static.igem.org/mediawiki/2015/4/42/USTC-index-Achievements.png">
 +
                <span class="white-text">Results</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav4">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Tutorials">
 +
                <img src="https://static.igem.org/mediawiki/2015/d/d5/USTC-index-Tutorials.png">
 +
                <span class="white-text">Tutorials</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
      </div>
 +
      <div class="row">
 +
        <div class="col s3 navi-inview fadeup" id="nav5">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Notebook">
 +
                <img src="https://static.igem.org/mediawiki/2015/b/b0/USTC-index-Notebook.png">
 +
                <span class="white-text">Notebook</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav6">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Practices">
 +
                <img src="https://static.igem.org/mediawiki/2015/3/3d/USTC-index-HumanPractice.png">
 +
                <span class="white-text">Human<br/>Practice</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav7">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Collaborations">
 +
                <img src="https://static.igem.org/mediawiki/2015/8/8b/USTC-index-Collaboration.png">
 +
                <span class="white-text">Collaborations</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
        <div class="col s3 navi-inview fadeup" id="nav8">
 +
          <div class="card hoverable">
 +
            <div class="card-image">
 +
              <a href="https://2015.igem.org/Team:USTC/Team">
 +
                <img src="https://static.igem.org/mediawiki/2015/a/a8/USTC-index-Team.png">
 +
                <span class="white-text">Team</span></a>
 +
            </div>
 +
          </div>
 +
        </div>
 +
      </div>
 +
    </div>
 +
    <div class="Footer grey lighten-1">
 +
      <div class="container">
 +
        <div class="row">
 +
          <div class="col s4 offset-s2">
 +
            <h5 style="margin-bottom: 2px;">Sponsored by <br/><img src="https://static.igem.org/mediawiki/2015/4/4c/Deutsche-bank-logo.png"></h5>
 +
          </div>
 +
          <div class="col s4">
 +
            <h5 style="margin-bottom: 0;">Links</h5>
 +
            <p style="margin:0;">
 +
              <a href="mailto:ustc.igem.2015@gmail.com"><img src="https://static.igem.org/mediawiki/2015/9/9d/USTC-Mail.png"></a>
 +
              <a href="http://weibo.com/3929719655/fans?topnav=1&wvr=6&mod=message&need_filter=1"><img src="https://static.igem.org/mediawiki/2015/6/60/USTC-Weibo.png"></a>
 +
              <a href="https://github.com/Cintau/2015USTCiGEM"><img src="https://static.igem.org/mediawiki/2015/3/36/USTC-GitHub.png"></a>
 +
              <a href="https://www.facebook.com/2014ustcchinaigem?ref=bookmarks"><img src="https://static.igem.org/mediawiki/2015/6/6e/USTC-Facebook.png"></a>
 +
            </p>
 +
          </div>
 +
        </div>
 +
      </div>
 +
    </div>
 +
  </div>
 
</div>
 
</div>
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<h4> Editing your wiki </h4>
 
−
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
 
−
<p> <a href="https://2015.igem.org/wiki/index.php?title=Team:USTC&action=edit"> Click here to edit this page! </a></p>
 
−
<p>See tips on how to edit your wiki on the <a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation</a> page.</p>
 
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<h4>Templates </h4>
 
−
<p> This year we have created templates for teams to use freely. More information on how to use and edit the templates can be found on the
 
−
<a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation </a> page.</p>
 
−
 
−
 
−
<h4>Tips</h4>
 
−
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
 
−
<ul>
 
−
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
 
−
<li>Be clear about what you are doing and how you plan to do this.</li>
 
−
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
 
−
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
 
−
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
 
−
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2015.igem.org/Calendar_of_Events">iGEM 2015 calendar</a> </li>
 
−
<li>Have lots of fun! </li>
 
−
</ul>
 
−
 
−
 
−
<h4>Inspiration</h4>
 
−
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
 
−
<ul>
 
−
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
 
−
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
 
−
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
 
−
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
 
−
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
 
−
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
 
−
</ul>
 
−
 
−
<h4> Uploading pictures and files </h4>
 
−
<p> You can upload your pictures and files to the iGEM 2015 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
 
−
When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
 
−
 
−
<a href="https://2015.igem.org/Special:Upload">CLICK HERE TO UPLOAD FILES</a>
 
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Latest revision as of 02:58, 19 September 2015