Difference between revisions of "Team:Macquarie Australia/Description"

 
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<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/ProjectOverview"><img src="https://static.igem.org/mediawiki/2015/a/a0/MqAust_1Project_v06a-150dpi.png" width="220px" alt="Link to Project page"></a></figure>
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<figure class="specialInline"><img src="https://static.igem.org/mediawiki/2015/0/07/NDproj2test.jpeg" alt="Project page"></figure>
 
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<figure class="specialInline"><img src="https://static.igem.org/mediawiki/2015/e/ed/MqAust_BubbleProject_1Description.png" width="110px" alt="Project Description page"></figure>
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<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Description"><img src="https://static.igem.org/mediawiki/2015/e/ed/MqAust_BubbleProject_1Description.png" width="110px" alt="Link to Project Description page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Experiments"><img src="https://static.igem.org/mediawiki/2015/9/91/MqAust_BubbleProject_2Experiments.png" width="110px" alt="Link to Experiments &amp; Protocols page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Experiments"><img src="https://static.igem.org/mediawiki/2015/9/91/MqAust_BubbleProject_2Experiments.png" width="110px" alt="Link to Experiments &amp; Protocols page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Results"><img src="https://static.igem.org/mediawiki/2015/0/08/MqAust_BubbleProject_3Results.png" width="110px" alt="Link to Results page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Results"><img src="https://static.igem.org/mediawiki/2015/0/08/MqAust_BubbleProject_3Results.png" width="110px" alt="Link to Results page"></a></figure>
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<!-- <figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Design"><img src="https://static.igem.org/mediawiki/2015/0/05/MqAust_BubbleProject_4Design.png" width="110px" alt="Link to Design page"></a></figure> no need for design page!-->
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Notebook"><img src="https://static.igem.org/mediawiki/2015/9/98/MqAust_BubbleProject_5Notebook.png" width="110px" alt="Link to Notebook page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Notebook"><img src="https://static.igem.org/mediawiki/2015/9/98/MqAust_BubbleProject_5Notebook.png" width="110px" alt="Link to Notebook page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Safety"><img src="https://static.igem.org/mediawiki/2015/6/6d/MqAust_BubbleProject_6Safety.png" width="110px" alt="Link to Safety page"></a></figure>
 
<figure class="specialInline"><a href="https://2015.igem.org/Team:Macquarie_Australia/Safety"><img src="https://static.igem.org/mediawiki/2015/6/6d/MqAust_BubbleProject_6Safety.png" width="110px" alt="Link to Safety page"></a></figure>
 
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<h2>Project Description</h2>
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<br>
<p>Our project has its focus on photosynthesis - the natural process where plants and algae convert sunlight into useable energy.
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    <h1 style="text-align: center;">Project Description</h2>
By developing artificial photosynthesis in a biological system we can better harvest the unlimited supply of solar energy.
+
The long-term goal is to engineer bacteria that can produce hydrogen gas on an industrial scale.
+
This year the aim of our team is to engineer bacteria to manufacture chlorophyll - the primary molecule of photosynthesis.
+
Chlorophyll harvests light and is involved in the excitation transfer of energy.
+
Chlorophyll-<i>a</i> can be synthesised via a pathway from the protoporphyrin-IX molecule.
+
By placing 13 genes into 4 biobrick vectors we can recreate the pathway in <i>Escherichia coli</i>.</p>
+
  
<h4>Experimental Organism</h4>
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    <h4 style="text-align: center;">The Looming Energy Crisis</h4>
<p>Why did we choose <i>Escherichia coli</i> (<i>E.coli</i>) as a chassis?
+
<p align="justify">The global population currently faces a looming energy crisis<sup>(1,2)</sup>.
One reason is that <i>E.coli</i> is a well-categorised species with an abundance of literature and stocks world-wide.</p>
+
Fossil fuels - the traditional sources of energy used to facilitate human civilisation - are dwindling in supply<sup>(1)</sup>.
 
+
Therefore, alternative energy sources must be discovered and developed in order to achieve future energy security.</p>
<h4>Ideas Explored</h4>
+
<br>
<p>The two different ideas that our project explores are the academic basis of photosynthesis and the potential applications.
+
Academically we want to learn more about the photosystems that enable photosynthesis.
+
However, we also want to investigate real-world applications to help the public engage with the topic.</p>
+
 
+
<h4>What is new from last year?</h4>
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<p>We completed the Chlorophyll biosynthesis pathway within <i>E. coli</i>.
+
A completely new aspect is the construction of Photosystem-II.
+
We placed into biobricks 17 important Photosystem-II genes designed to function in 5 operons.</p>
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<div class="centreStuffInline">
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<div class="centreStuffInline">
<figure><img src="https://static.igem.org/mediawiki/2015/8/80/MqAust_ProjectDescAllDiagrams.png" width="880px" alt="Project Overview diagram"></figure>
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<figure class="specialInline"><img src="https://static.igem.org/mediawiki/2015/f/f5/MqiGEM2332.jpg" width="400px">
 +
</figure>
 +
  <figcaption><center><i>Fig 1. Energy supplies are dwindling. Taken from theenergycollective.com</i></figcaption>
 
</div>
 
</div>
  
<h2>Project Background</h2>
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<br>
<h4>The Looming Energy Crisis</h4>
+
    <h4 style="text-align: center;">Attempted Solutions</h4>
<p>The global population currently faces a looming energy crisis<sup>1,2</sup>.
+
Fossil fuels - the traditional sources of energy used to facilitate human civilisation - are dwindling in supply<sup>1</sup>.
+
Therefore, alternative energy sources must be discovered and developed in order to achieve future energy security.</p>
+
  
<h4>Attempted Solutions</h4>
+
<p align="justify">Renewable energy technologies which indirectly harness the power of the sun - such as wind and wave power - are currently utilised across the world in varying degrees<sup>(2,3)</sup>.
<p>Renewable energy technologies which indirectly harness the power of the sun - such as wind and wave power - are currently utilised across the world in varying degrees<sup>2,3</sup>.
+
It is also increasingly popular to directly harness solar power by converting light energy to electrical energy in solar cells<sup>(3)</sup>.
It is also increasingly popular to directly harness solar power by converting light energy to electrical energy in solar cells<sup>3</sup>.
+
 
However, there are issues associated with the implementation of this technology such as the energy-expensive nature of solar cell and battery construction and maintenance.</p>
 
However, there are issues associated with the implementation of this technology such as the energy-expensive nature of solar cell and battery construction and maintenance.</p>
 +
<br>
 +
    <h4 style="text-align: center;">Photosynthesis - Nature’s Answer to the Problem</h4>
  
<h4>Photosynthesis - Nature’s Answer to the Problem</h4>
+
<p align="justify">It's well known that photosynthesis is nature's own way of converting light energy from the sun into chemical energy in the form of glucose.
<p>It's well known that photosynthesis is nature's own way of converting light energy from the sun into chemical energy in the form of glucose.
+
The goal of Macquarie University's 2015 iGEM team - the Solar Synthesisers - is to utilise the solar-harnessing powers of chlorophyll and photosystem II in order to produce an environmentally friendly and renewable source of chemical energy, namely hydrogen gas.
The goal of Macquarie University's 2015 iGEM team - the Solar Synthesisers - is to utilise the solar-harnessing powers of chlorophyll and photosystem II in order to produce an environmentally friendly and renewable source of chemical energy, namely Hydrogen gas.
+
When combusted hydrogen gas produces only water and energy - this is highly desirable from an environmental perspective<sup>(4)</sup>.</p>
When combusted Hydrogen gas produces only water and energy - this is highly desirable from an environmental perspective<sup>4</sup>.</p>
+
<br>
 +
    <h4 style="text-align: center;">The Solar Synthesisers’ Project</h4>
  
<h4>The Solar Synthesisers’ Project</h4>
+
<p align="justify">To achieve this goal we're building on the work of last year's Macquarie University iGEM team by transforming <i>E. coli</i> with the genes required to complete the <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Notebook1CBP">chlorophyll biosynthesis pathway</a> and create <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Notebook2PSB">photosystem II</a> in this bacterial species.
<p>To achieve this goal we're building on the ground-breaking work of last year's gold medal-winning Macquarie University iGEM team by transforming <i>E. coli</i> with the genes required to complete the <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Notebook1CBP">chlorophyll biosynthesis pathway</a> and create <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Notebook2PSB">photosystem II</a> in this bacterial species.
+
 
These systems will allow for the use of solar energy to split water into positively-charged hydrogen ions, electrons, and oxygen.
 
These systems will allow for the use of solar energy to split water into positively-charged hydrogen ions, electrons, and oxygen.
 
Our next goal is then to combine the hydrogen ions and electrons produced in this hydrolytic process in a hydrogenase enzyme complex in order to produce <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Practices/Implementation">hydrogen gas on an industrial scale</a>.
 
Our next goal is then to combine the hydrogen ions and electrons produced in this hydrolytic process in a hydrogenase enzyme complex in order to produce <a class="regularHyperlink" href="https://2015.igem.org/Team:Macquarie_Australia/Practices/Implementation">hydrogen gas on an industrial scale</a>.
Hence in order to produce a renewable and environmentally-friendly source of energy we present the Solar Synthesisers’ 3 step plan: <b>Capture</b>, <b>Transfer</b> and <b>Synthesise</b>!</p>
+
Hence in order to produce a renewable and environmentally-friendly source of energy we present the Solar Synthesisers’ 3 step plan: <b><font color="#38B003">Capture</font></b>, <b><font color="#38B003">Transfer</font></b> and <b><font color="#38B003">Synthesise</font></b>!</p>
 +
<br>
  
<h5>Capture</h5>
+
<div class="centreStuffInline">
<p>In order to capture light energy from the sun we aim to use chlorophyll pigment to capture photons.
+
<figure><img src="https://static.igem.org/mediawiki/2015/8/80/MqAust_ProjectDescAllDiagrams.png" width="880px" alt="Project Overview diagram"></figure>
 +
<figcaption><center><i>Fig 2. Project Overview.</i></figcaption>
 +
</div>
 +
<br>
 +
 
 +
<h5 style="text-align: center;"><font color="#38B003">Capture</font></h5>
 +
 
 +
<p align="justify">In order to capture light energy from the sun we aim to use chlorophyll pigment to capture photons.
 
We aim to transform and express within <i>E. coli</i> the 13 genes required to complete the chlorophyll synthesis pathway in this species.</p>
 
We aim to transform and express within <i>E. coli</i> the 13 genes required to complete the chlorophyll synthesis pathway in this species.</p>
 +
<br>
  
<h5>Transfer</h5>
+
<h5 style="text-align: center;"><font color="#38B003">Transfer</font></h5>
<p>In photosystem II the energy captured by the chlorophylls is used to split water into protons, electrons, and molecular oxygen.</p>
+
  
<h5>Synthesise</h5>
+
<p align="justify">In photosystem II the energy captured by the chlorophylls is used to split water into protons, electrons, and molecular oxygen.</p>
<p>The next step is the combination of two protons and two electrons in a hydrogenase enzyme complex to synthesise hydrogen gas.
+
<br>
 +
<h5 style="text-align: center;"><font color="#38B003">Synthesise</font></h5>
 +
<p align="justify">The next step is the combination of two protons and two electrons in a hydrogenase enzyme complex to synthesise hydrogen gas.
 
The commercially-viable production of industrial quantities of hydrogen gas will represent the successful completion of our project.</p>
 
The commercially-viable production of industrial quantities of hydrogen gas will represent the successful completion of our project.</p>
  
<h4>References</h4>
+
<br>
<p>Please see our <a href="https://2015.igem.org/Team:Macquarie_Australia/Attributions/References">References page</a> for the list of citations.</p>
+
    <h4 style="text-align: center;">What is new from last year?</h4>
 +
 
 +
<p align="justify">First, we are all new to iGEM!! The full <a href="https://2015.igem.org/Team:Macquarie_Australia/Team">team</a> was only assembled at the end of July 2015, as a capstone class for our <a class="regularHyperlink" href="https://2015.igem.org/File:Louise%27s_article.pdf" target="_blank">Biomolecular sciences major</a>.
 +
We completed the genes within the Chlorophyll biosynthesis pathway.
 +
We started, and constructed 14 out of the 17 Photosystem-II genes into Biobricks (<a href="https://2015.igem.org/Team:Macquarie_Australia/Results">Results</a>).
 +
        We <a href="https://2015.igem.org/Team:Macquarie_Australia/Modeling">modeled</a> the conversion of ALA to PPIX in <i>E. coli</i>, and the production of hydrogen gas using PSII. </p>
 +
 
 +
<br>
 +
    <h4 style="text-align: center;">Experimental Organism - Why <i>E. coli</i>?</h4>
 +
 
 +
<p align="justify">Rather than engineering a naturally-photosynthetic organism and individually targeting genes in a pathway, we chose <i>E. coli</i> as our experimental host so we could engineer an entire novel metabolic pathway of our own design.
 +
Using <i>E. coli</i> as our host allowed us to incorporate the somewhat large and complex chlorophyll-a biosynthesis pathway, comprising 13 genes, as well as all 17 genes comprising PSII. Incorporation of both pathways in the robust and fast-growing <i>E. coli</i> host provides us with a valuable tool with ‘plug-and-play’ capabilities that allow for further future downstream potentials such as re-engineering the pathway to produce other members of the chlorophyll family.  
 +
<br>
 +
        </p>
 +
<br>
 +
<br>
 +
    <h4 style="text-align: center;">Summary of achievements</h4>
 +
 
 +
<ul>
 +
<li>Successful completion of the chlorophyll-a synthesis pathway - all 13 genes required for chlorophyll-a synthesis in E. coli successfully placed into BioBricks</li>
 +
<li>Functional characterisation of the ChlM (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1640018">BBa_K1640018</a>) enzyme. Functionality was demonstrated in converting Magnesium-Protoporphyrin IX (Mg-PPIX) to Magnesium-Protoporphyrin IX-Monomethyl Ester (Mg-PPIX-ME). The presence of ChlM further confirmed by running of extracted protein on an SDS-PAGE gel</li>
 +
<li>Improved the characterization of Gun4 (<a href="http://parts.igem.org/Part:BBa_K1080003">BBa_K1080003</a>) by showing PPIX binding with an alternate, simpler method and documented it as a contribution under the <a href="http://parts.igem.org/Part:BBa_K1080003:Experience">experience page</a></li>
 +
<li>Successfully constructed BioBricks containing 14 of the 17 genes required for biosynthesis of Photosystem II</li>
 +
<li>Modelling of pathway from 5-aminolevulinic acid to PPIX. This determined what concentration of 5-aminolevulinic acid (5-ALA) resulted in optimum yield of Protoporphyrin IX (PPIX).</li>
 +
</ul><br><br>
 +
<h5>References</h5>
 +
<ol>
 +
<li>Armaroli, N. & Balzani, V. (2011). The hydrogen issue. <i>ChemSusChem, 4</i>, 21–36.</li>
 +
<li>Kessel, D.G. (2000). Global warming: facts, assessment, countermeasures. <i>Journal of Petroleum Science and Engineering, 26</i>, 157–168.</li>
 +
<li>Ellabban, O., Abu-Rub, H. & Blaabjerg, F. (2014). Renewable energy resources: current status, future prospects and their enabling technology. <i>Renewable and Sustainable Energy Reviews, 39</i>, 748–764. doi:10.1016/j.rser.2014.07.113.</li>
 +
<li>Altork, L.N. & Busby, J. R. (2010). Hydrogen fuel cells: part of the solution. <i>Technology and Engineering Teacher, 70</i>(2), 22-27.</li>
 +
</ol>
  
 
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Latest revision as of 22:50, 20 October 2015

Project Overview
Project page
Link to Project Description page
Link to Experiments & Protocols page
Link to Results page
Link to Notebook page
Link to Safety page

Project Description

The Looming Energy Crisis

The global population currently faces a looming energy crisis(1,2). Fossil fuels - the traditional sources of energy used to facilitate human civilisation - are dwindling in supply(1). Therefore, alternative energy sources must be discovered and developed in order to achieve future energy security.


Fig 1. Energy supplies are dwindling. Taken from theenergycollective.com

Attempted Solutions

Renewable energy technologies which indirectly harness the power of the sun - such as wind and wave power - are currently utilised across the world in varying degrees(2,3). It is also increasingly popular to directly harness solar power by converting light energy to electrical energy in solar cells(3). However, there are issues associated with the implementation of this technology such as the energy-expensive nature of solar cell and battery construction and maintenance.


Photosynthesis - Nature’s Answer to the Problem

It's well known that photosynthesis is nature's own way of converting light energy from the sun into chemical energy in the form of glucose. The goal of Macquarie University's 2015 iGEM team - the Solar Synthesisers - is to utilise the solar-harnessing powers of chlorophyll and photosystem II in order to produce an environmentally friendly and renewable source of chemical energy, namely hydrogen gas. When combusted hydrogen gas produces only water and energy - this is highly desirable from an environmental perspective(4).


The Solar Synthesisers’ Project

To achieve this goal we're building on the work of last year's Macquarie University iGEM team by transforming E. coli with the genes required to complete the chlorophyll biosynthesis pathway and create photosystem II in this bacterial species. These systems will allow for the use of solar energy to split water into positively-charged hydrogen ions, electrons, and oxygen. Our next goal is then to combine the hydrogen ions and electrons produced in this hydrolytic process in a hydrogenase enzyme complex in order to produce hydrogen gas on an industrial scale. Hence in order to produce a renewable and environmentally-friendly source of energy we present the Solar Synthesisers’ 3 step plan: Capture, Transfer and Synthesise!


Project Overview diagram
Fig 2. Project Overview.

Capture

In order to capture light energy from the sun we aim to use chlorophyll pigment to capture photons. We aim to transform and express within E. coli the 13 genes required to complete the chlorophyll synthesis pathway in this species.


Transfer

In photosystem II the energy captured by the chlorophylls is used to split water into protons, electrons, and molecular oxygen.


Synthesise

The next step is the combination of two protons and two electrons in a hydrogenase enzyme complex to synthesise hydrogen gas. The commercially-viable production of industrial quantities of hydrogen gas will represent the successful completion of our project.


What is new from last year?

First, we are all new to iGEM!! The full team was only assembled at the end of July 2015, as a capstone class for our Biomolecular sciences major. We completed the genes within the Chlorophyll biosynthesis pathway. We started, and constructed 14 out of the 17 Photosystem-II genes into Biobricks (Results). We modeled the conversion of ALA to PPIX in E. coli, and the production of hydrogen gas using PSII.


Experimental Organism - Why E. coli?

Rather than engineering a naturally-photosynthetic organism and individually targeting genes in a pathway, we chose E. coli as our experimental host so we could engineer an entire novel metabolic pathway of our own design. Using E. coli as our host allowed us to incorporate the somewhat large and complex chlorophyll-a biosynthesis pathway, comprising 13 genes, as well as all 17 genes comprising PSII. Incorporation of both pathways in the robust and fast-growing E. coli host provides us with a valuable tool with ‘plug-and-play’ capabilities that allow for further future downstream potentials such as re-engineering the pathway to produce other members of the chlorophyll family.



Summary of achievements

  • Successful completion of the chlorophyll-a synthesis pathway - all 13 genes required for chlorophyll-a synthesis in E. coli successfully placed into BioBricks
  • Functional characterisation of the ChlM (BBa_K1640018) enzyme. Functionality was demonstrated in converting Magnesium-Protoporphyrin IX (Mg-PPIX) to Magnesium-Protoporphyrin IX-Monomethyl Ester (Mg-PPIX-ME). The presence of ChlM further confirmed by running of extracted protein on an SDS-PAGE gel
  • Improved the characterization of Gun4 (BBa_K1080003) by showing PPIX binding with an alternate, simpler method and documented it as a contribution under the experience page
  • Successfully constructed BioBricks containing 14 of the 17 genes required for biosynthesis of Photosystem II
  • Modelling of pathway from 5-aminolevulinic acid to PPIX. This determined what concentration of 5-aminolevulinic acid (5-ALA) resulted in optimum yield of Protoporphyrin IX (PPIX).


References
  1. Armaroli, N. & Balzani, V. (2011). The hydrogen issue. ChemSusChem, 4, 21–36.
  2. Kessel, D.G. (2000). Global warming: facts, assessment, countermeasures. Journal of Petroleum Science and Engineering, 26, 157–168.
  3. Ellabban, O., Abu-Rub, H. & Blaabjerg, F. (2014). Renewable energy resources: current status, future prospects and their enabling technology. Renewable and Sustainable Energy Reviews, 39, 748–764. doi:10.1016/j.rser.2014.07.113.
  4. Altork, L.N. & Busby, J. R. (2010). Hydrogen fuel cells: part of the solution. Technology and Engineering Teacher, 70(2), 22-27.