Difference between revisions of "Team:Bielefeld-CeBiTec/Project/HeavyMetals"
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+ | </br> | ||
+ | <!--<h1>An Introduction to heavy metal biosensors</h1></br>--> | ||
+ | <h2 align="center">Heavy metals have been part in a lot of iGEM projects over the last years, so why work with them again?</h2></br> | ||
+ | <p> | ||
+ | <p>Heavy metals are still a major problem. Therefore, they have been part in a lot of iGEM projects. There are many concepts to create heavy metal sensors. Some of them work extraordinary well. But most of these sensors never made it to real world applications. We aim to make a use of well characterized sensors as well as concepts and new ideas. All this sensor systems shell work on the same principle, so that we can use them to create a modular easy to handle paper based cell free test strip for detection of more substances, heavy metals in this case, in parallel.</br></br> | ||
+ | "<i>In my opinion the test stripe system has great potential in the field of monitoring contamination in industrial wastewater. It`s a fast and easy available system for qualitative control of several heavy metals.</i>” (Dr.rer.nat. Andreas Bermpohl, manager of Biotec GmbH)</p> | ||
+ | |||
+ | </p> </br> | ||
+ | |||
+ | <div class="featurette"> | ||
+ | <img class="featurette-image img-responsive pull-left" src="https://static.igem.org/mediawiki/2015/3/38/Bielefeld-CeBiTec_heavy_metal_poisoning.jpg" alt="survey result" width="500px" > | ||
+ | <p><b>Why heavy metals?</b></br> | ||
+ | Heavy metals are part of Earth’s crust. Therefore, they do occur naturally in our environment. (Heavy Metals - Lenntech) In low doses some of them as copper or nickel are even essential trace elements for animals and humans (Rashmi Verma and Pratima Dwivedi 2013). A major problem is their bioaccumulation, which leads to toxicity and long term effects which include fatal diseases like cancer (Martin <i>et al.</i> 2009), Parkinson`s or Alzheimer’s disease (Gaggelli <i>et al.</i> 2006) (figure 1). </div> | ||
+ | |||
+ | <div class="featurette"> | ||
+ | <img class="featurette-image img-responsive pull-left" src="https://static.igem.org/mediawiki/2015/0/0b/Bielefeld-CeBiTec_Heavy_Metal_GW_overview.jpg" alt="survey result" width="500px" > | ||
+ | <p style="margin-top: 0px"><b>Which heavy metals?</b></br> | ||
+ | The heavy metal sensors we chose for detection are specific to arsenic, copper, chromium, lead, mercury and nickel. Their concentrations in drinking water are regulated by the WHO, because of their immediate and long term health effects (figure 2). | ||
+ | </div> | ||
+ | |||
+ | <div class="featurette" style="padding-top: 20px"> | ||
+ | <img class="featurette-image img-responsive pull-right" src="https://static.igem.org/mediawiki/2015/0/00/Bielefeld-CeBiTec_general-concept-biosensors.jpeg" alt="survey result" width="500px" style="margin-top: -40px"> | ||
+ | <p><b>Our biosensors</b></br> | ||
+ | We decided to work with already existing, well-characterized sensors as well as with established but not well-characterized concepts of other teams and moreover create new sensor systems. Therefore, we established a basic construction plan for our sensor systems, which is based on a promoter with a specific operator region in front of a super folder GFP (sfGFP), which was used for detection trough <a href="https://2015.igem.org/team:Bielefeld-CeBiTec/Design"target="_blank">fluorescence analysis</a>. In addition we used fitting activators or repressors for our inducible promoters under the control of BBa_K608002, which consists of a constitutive promoter with a strong ribosomal binding site (RBS) (figure 3). | ||
+ | We combined these into a device consisting of constitutive promoter and RBS reverse and the promoter and operator region in upstream of the <i>sfGFP</i>. So we have repressor or activator constitutively expressed in reverse orientation. This was done to minimize the background transcription of the inducible system in upstream of our heavy metal promoter operator system. In addition, these devices are optimized for the usage in a cell free protein synthesis(<a href="https://2015.igem.org/Project/CFPS"target="_blank">CFPS</a>). This is the basis for the development of cell free biosensors on a test strip, which can be used to detect several heavy metals at once in the open field.</div> | ||
+ | |||
+ | |||
+ | </br></br></br> | ||
+ | |||
+ | |||
− | <p>Click on the test strip for more information about the heavy metals and how they can be detected:</p> | + | <p><b>Click on the test strip for more information about the heavy metals and how they can be detected:</b></p> |
<div style="position: relative"> | <div style="position: relative"> | ||
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</div> | </div> | ||
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<div id="arsenic" style="display: none"> | <div id="arsenic" style="display: none"> | ||
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<p>Arsenic can be accurately detected by means of techniques such as atomic absorption spectroscopy (AAS), atomic fluorescence spectrometry or high-performance liquid chromatography with tandem mass spectrometry (LC-MS/MS). However, they are expensive and not suitable for field testing (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Chen2014">Chen, Rosen 2014</a>). | <p>Arsenic can be accurately detected by means of techniques such as atomic absorption spectroscopy (AAS), atomic fluorescence spectrometry or high-performance liquid chromatography with tandem mass spectrometry (LC-MS/MS). However, they are expensive and not suitable for field testing (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Chen2014">Chen, Rosen 2014</a>). | ||
Chemical test kits are available, which mostly rely on the Gutzeit method. This method is based on the generation of arsine gas from a sample solution. Arsine then reacts with a mercuric bromide impregnated test strip, which results in a color change (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Kearns2010">Kearns 2010</a>). The accuracy and reliability of this method has been called into question (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Rahman2002">Rahman et al. 2002</a>). | Chemical test kits are available, which mostly rely on the Gutzeit method. This method is based on the generation of arsine gas from a sample solution. Arsine then reacts with a mercuric bromide impregnated test strip, which results in a color change (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Kearns2010">Kearns 2010</a>). The accuracy and reliability of this method has been called into question (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Rahman2002">Rahman et al. 2002</a>). | ||
− | The need for an inexpensive and | + | The need for an inexpensive and reliable detection method has led to the development of various arsenic biosensors. Among them are both whole-cell-based and cell-free biosensors. For a recent review, refer to <a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Kaur2015">Kaur et al. 2015</a>.</p> |
<h3>Our arsenic biosensor</h3> | <h3>Our arsenic biosensor</h3> | ||
− | <p>We choose to work with the chromosomal arsenic operon of <i>E. coli</i>, which was used by the team from Edinburgh in 2006. This operon encodes an efflux pump which confers resistance against arsenic. The expression is controlled by the repressor ArsR, which negatively autoregulates its own expression. As<sup>III</sup> can bind to three cysteine residues in ArsR. The resulting conformational change deactivates the repressor (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Chen2014">Chen, Rosen 2014</a>).</p> | + | <p>We choose to work with the chromosomal arsenic operon of <i>E. coli</i>, which was used by the team from Edinburgh in 2006. This operon encodes an efflux pump, which confers resistance against arsenic. The expression is controlled by the repressor ArsR, which negatively autoregulates its own expression. As<sup>III</sup> can bind to three cysteine residues in ArsR. The resulting conformational change deactivates the repressor (<a href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/HeavyMetals#Chen2014">Chen, Rosen 2014</a>).</p> |
<h3>References</h3> | <h3>References</h3> | ||
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<div id="chromium" style="display: none"> | <div id="chromium" style="display: none"> | ||
<h3>Occurrence</h3> | <h3>Occurrence</h3> | ||
− | <p>Chromium is an essential part of the earth´s crust.It is the sixth most abundant one and used | + | <p>Chromium is an essential part of the earth´s crust. It is the sixth most abundant one and used in metallurgical, chemical and refractory form. The three most important oxidative forms of chromium are the elemental metal (Cr), the trivalent (Cr<sup>III</sup>) and the hexavalent (Cr<sup>VI</sup>) (Mitchell D. Cohen et al.).</p> |
<h3>Health effects</h3> | <h3>Health effects</h3> | ||
− | <p>While the trivalent form is an essential dietary mineral and | + | <p>While the trivalent form is an essential dietary mineral and the most common natural form, it is of interest to detect the hexavalent form because of its potential toxicity and carcinogenic effects. Most of it is produced trough industrial uses (Paustenbach et al. 2003). Chromium intoxication can result in damage to the nervous system, fatigue and mental instability (Singh et al. 2011). Its potential cancerogenity is the result of chromium VI being , able to enter cells , while this is not possible for chromium III compounds. Inside of the cells, chromium IV is reduced to chromium III and can not leave the cells anymore, where it results in oxidative stress reactions (Mitchell D. Cohen et al.). Because of its toxicity the World Health Organization (WHO) recommends a limit of 50 µg/L chromium in drinking water. In contrast to this guideline concentrations of 120 µg/l chromium were detected in drinking water in the USA (Guidelines for drinking-water quality 2011, WHO 2003).</p> |
− | Chromium intoxication can result in damage to the nervous system, fatigue and mental instability (Singh et al. 2011). | + | |
<h3>Detection</h3> | <h3>Detection</h3> | ||
− | <p>Chromium in drinking water is detected trough atomic absorption spectroscopy (AAS) or | + | <p>Chromium in drinking water is detected trough atomic absorption spectroscopy (AAS) or ion chromatography with post column derivatization and UV visible spectroscopic detection (U.S. EPA, OW, OGWDW, SRMD, Technical Support Center). Moreover, chromium detection at home can be detected by a basic titrimetric method using an iodide reaction for measurement (GIORGIA).</p> |
<h3>Our chromium biosensor</h3> | <h3>Our chromium biosensor</h3> | ||
− | <p>We work with the chromate inducible operon of | + | <p>We work with the chromate inducible operon of <i>Ochrobactrum triti</i> ci5bvl1, which enables a tolerance for chromium VI and superoxide. The expression of the operon depends on the bondage of the repressor chrB to the operator sequence (Branco et al. 2008). The chrBACF operon (<a href="http://parts.igem.org/Part:BBa_K1058007" target="_blank">BBa_K1058007</a>) and the chrB repressor were introduced by the team BIT 2013.</p> |
<h3>References</h3> | <h3>References</h3> | ||
− | <p> | + | <div class="references"> |
− | + | <p id="Branco et al.,2008">Branco, Rita; Chung, Ana Paula; Johnston, Tatiana; Gurel, Volkan; Morais, Paula; Zhitkovich, Anatoly (2008): The chromate-inducible chrBACF operon from the transposable element TnOtChr confers resistance to chromium(VI) and superoxide. In: Journal of bacteriology 190 (21), S. 6996–7003. DOI: 10.1128/JB.00289-08</p> | |
− | + | <p id="GIORGIA"> GIORGIA: istr3845R2_ok,.></p> | |
− | + | <p id="Guidelines for Drinking-water Quality, Fourth Edition "> Background document for development of WHO Guidelines for Drinking-water Quality, checked on 9/9/2015. Copper excess, zinc deficiency, and cognition loss in Alzheimer's disease - Brewer - 2012 - BioFactors - Wiley Online Library. Available online at http://onlinelibrary.wiley.com/doi/10.1002/biof.1005/abstract. </p> | |
− | + | ||
− | + | <p id="Mitchell D. Cohen et al. ">Mitchell D. Cohen; Biserka Kargacin; Catherine B. Klein; and Max Costa: Mechanisms of Chromium Carcinogenicity and Toxicity, zuletzt geprüft am 19.08.2015.</p> | |
− | + | <p id="Paustenbach et al. 2003"> Paustenbach, Dennis J.; Finley, Brent L.; Mowat, Fionna S.; Kerger, Brent D. (2003): Human health risk and exposure assessment of chromium (VI) in tap water. In: Journal of toxicology and environmental health. Part A 66 (14), S. 1295–1339. DOI: 10.1080/15287390306388.</p> | |
+ | |||
+ | <p id="Singh et al. 2011"> Singh, Reena; Gautam, Neetu; Mishra, Anurag; Gupta, Rajiv (2011): Heavy metals and living sys-tems: An overview. In: Indian journal of pharmacology 43 (3), S. 246–253. DOI: 10.4103/0253-7613.81505.</p> | ||
+ | |||
+ | <p id="U.S. EPA, OW, OGWDW, SRMD, Technical Support Center"> U.S. EPA, OW, OGWDW, SRMD, Technical Support Center: Method 218.7: Determination of Hexavalent Chromium in Drinking Water by Ion Chromatography with Post-Column Derivatization and UV-Visible Spectroscopic Detection.</p> | ||
+ | |||
+ | |||
</div> | </div> | ||
− | + | </div> | |
<div id="copper" style="display: none"> | <div id="copper" style="display: none"> | ||
− | + | <h3>Occurrence</h3> | |
− | <p>Copper is an essential trace element for | + | <p>Copper is an essential trace element for humans, animals and plants. The human body contains concentrations of 1.4 to 2.1 mg/kg body mass. Copper is ingested through the gut and transferred to most tissues through the liver. It is used in coating alloys and used to make pipes, valves and fittings. Moreover coppersulfate pentahydrate is used in algae control by adding it to surface water. Therefore copper concentrations in drinking water vary widely and range from 0,005 mg/L to 30 mg/L. After the guidelines for drinking water the maximal concentration of copper is 2 mg/L (Guidelines for Drinking-water Quality, Fourth Edition ).</p> |
+ | |||
+ | |||
<h3>Health effects</h3> | <h3>Health effects</h3> | ||
− | <p>Copper is | + | <p>Copper is essential for human health, but in to high doses it can cause anemia, kidney and liver damage as well as stomach and intestinal irritation and immunotoxicity (ATSDR). A with copper associated disease is Wilsons disease which manifests in a misfunction, so that copper can not be excreted by the liver into bile. If not treated this can lead to brain and liver damage (US EPA ORD NCEA Integrated Risk Information System (IRIS) 2014). Some studies associate high copper levels with aging diseases such as atherosclerosis and Alzheimer’s disease (Brewer 2012).</p> |
<h3>Detection</h3> | <h3>Detection</h3> | ||
− | <p>The most important analytical | + | <p>The most important analytical method for the detection of copper in water is the inductively coupled plasma mass spectrometry (ICP-MS),which has the lowest detection limit (0.02 μg/L). Other methods often used for detection are the atomic absorption spectrometry (AAS) with flame detection, which has the highest (20 μg/L) as well as graphite furnace atomic absorption spectroscopy, inductively coupled plasma atomic emission spectroscopy and stabilized temperature platform graphite furnace atomic absorption (cavillona 2004).</p> |
<h3>Our copper Biosensor</h3> | <h3>Our copper Biosensor</h3> | ||
− | <p> | + | <p>We used the native operator of copper homeostasis from <i>E. coli </i>K12. This includes the promoter (CopAP) and its regulator CueR. CueR is a MerR like regulator, which stimulates the transcription of CopA, a P-type ATPase pump (Outten et al. 2000). CopA is the central component in obtaining copper homeostasis, it exports free copper from cytoplasm to the periplasm. This is enabled by copper induced activation of the operon transcription via CueR. The CueR-Cu<sup>+</sup> is the DNA-binding transcriptional dual regulator which activates transcription (Yamamoto, Ishihama 2005). We combined CueR (<a href="http://parts.igem.org/Part:BBa_K1758320" target="_blank">BBa_K1758320</a>) under the control of a constitutive promoter with the operator site of CopA Promoter and sfGFP (<a href="http://parts.igem.org/Part:BBa_K1758321" target="_blank">BBa_K1758321</a>) for measuring output signals.</p> |
<h3>References</h3> | <h3>References</h3> | ||
− | <p id=" ATSDR "> ATSDR: TOXICOLOGICAL PROFILE FOR COPPER, checked on 8/27/2015. cavillona (2004): Copper in Drinking-water. Background document for development of WHO Guidelines for Drinking-water Quality, checked on 9/9/2015. Copper excess, zinc deficiency, and cognition loss in Alzheimer's disease - Brewer - 2012 - BioFactors - Wiley Online Library. Available online at http://onlinelibrary.wiley.com/doi/10.1002/biof.1005/abstract, checked on 8/28/2015. </p> | + | <div class="references"> |
+ | <p id=" ATSDR "> ATSDR: TOXICOLOGICAL PROFILE FOR COPPER, checked on 8/27/2015. </p> | ||
+ | <p id=" cavillona (2004) "> cavillona (2004): Copper in Drinking-water. </p> | ||
+ | <p id="Guidelines for Drinking-water Quality, Fourth Edition "> Background document for development of WHO Guidelines for Drinking-water Quality, checked on 9/9/2015. Copper excess, zinc deficiency, and cognition loss in Alzheimer's disease - Brewer - 2012 - BioFactors - Wiley Online Library. Available online at http://onlinelibrary.wiley.com/doi/10.1002/biof.1005/abstract, checked on 8/28/2015. </p> | ||
<p id=" Grass, Rensing 2001 "> Grass, Gregor; Rensing, Christopher (2001): Genes Involved in Copper Homeostasis in Escherichia coli, checked on 8/26/2015. Guidelines for Drinking-water Quality, Fourth Edition, checked on 9/9/2015.</p> | <p id=" Grass, Rensing 2001 "> Grass, Gregor; Rensing, Christopher (2001): Genes Involved in Copper Homeostasis in Escherichia coli, checked on 8/26/2015. Guidelines for Drinking-water Quality, Fourth Edition, checked on 9/9/2015.</p> | ||
<p id=" Outten et al. 2000"> Outten, F. W.; Outten, C. E.; Hale, J.; O'Halloran, T. V. (2000): Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, cueR. In The Journal of biological chemistry 275 (40), pp. 31024–31029. DOI: 10.1074/jbc.M006508200.</p> | <p id=" Outten et al. 2000"> Outten, F. W.; Outten, C. E.; Hale, J.; O'Halloran, T. V. (2000): Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, cueR. In The Journal of biological chemistry 275 (40), pp. 31024–31029. DOI: 10.1074/jbc.M006508200.</p> | ||
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+ | </div> | ||
+ | </div> | ||
<div id="lead" style="display: none"> | <div id="lead" style="display: none"> | ||
− | + | <h3>Occurrence</h3> | |
− | <p>Lead is a heavy metal | + | <p>Lead is a heavy metal with widespread occurrence. The relatively simple extraction methods and several desirable properties have made it useful to humans. Lead and lead compounds are used in a high variety of products, such as pipes and plumbing materials, solders, gasoline, batteries, ammunition and cosmetics. Therefore, lead plays a major role in the industry and is one of the most used metals. Compared to other metals its occurrence is relative low. Lead can be detected in different parts of the environment, like air, soil and water. |
− | + | A high concentration of lead in drinking water is often induced by obstruct pipes that consist of lead or that has a part of lead, respectively. This allow water to be easily contaminated. That is often a problem in houses, where lead is used in household plumbing. Due to the fact that lead is also occurring in water, it could result in adverse health effects (WHO: Fact sheet number 379, Lead poisoning and health).</p> | |
− | + | ||
− | Lead | + | |
− | + | ||
<h3>Health Effects</h3> | <h3>Health Effects</h3> | ||
− | <p>Lead has no biological role in the body, but | + | <p>Lead has no biological role in the body, but is a highly poisonous metal. The ingestion of lead could affect almost every organ and system in the body (EPA Health Effects: How Lead Affects the body). The main target for lead toxicity is the nervous system. It can have acute or chronic health effects. The acute health effects are occurring immediately after contact with lead. This can be irritation of the eyes or can cause headache, irritability, disturbed sleep, and mood as well as personality changes. Exposure to higher lead concentrations over a long-term could cause serious damage to the brain and to the kidneys. And finally the damage can cause death (Golub, M. S., 2005). The poisoning is mostly resulting of ingestion of water or food, which is contaminated with lead or lead compounds (Ferner, D. J., 2001). It is quickly taken up into the bloodstream and spread in the body (Bergeson, L., 2008). The World Health Organization recommends a limit of 10 µg/L in drinking water, concentrations in drinking water are generally below 5 μg/L. Nevertheless, there are much higher concentrations that have been measured if lead fittings are existing (WHO: Guidelines for Drinking-water Quality, fourth edition). |
− | The poisoning is mostly resulting of ingestion of water or food, which is contaminated with lead or lead compounds (Ferner D. J., 2001).It is taken up | + | |
− | The World Health Organization recommends a limit of 10 µg/L in drinking water, concentrations in drinking water are generally below 5 μg/ | + | |
</p> | </p> | ||
<h3>Detection</h3> | <h3>Detection</h3> | ||
− | <p>Due to the effects on health the detection of lead in drinking water is of importance in all parts of the world. | + | <p>Due to the effects on health, the detection of lead in drinking water is of importance in all parts of the world. Therefore, a simple system for a fast review of the water quality is a worthwhile aim. The method for detection is currently based on the principle of flame atomic absorption spectrometry (FAAS) (Abdallah, A. T. and Moustafa, M. A., 2002). This detection method is difficult to implement in developing countries, and time consuming thus there are hardly any quality standards. |
− | The method for detection is currently on the principle of flame atomic absorption spectrometry (FAAS) (Abdallah, A. T. and Moustafa, M. A.,2002). | + | |
− | This detection method is | + | |
</p> | </p> | ||
<h3>Our lead biosensor</h3> | <h3>Our lead biosensor</h3> | ||
− | <p>For our biosensor | + | <p>For our biosensor we use parts of the chromosomal lead operon of <EM>Cupriavidus metallidurans</EM>. Naturally the operon for lead resistance contains <i>pbrT</i>, which encodes a Pb(II) uptake protein, <i>pbrA</i>, which encodes a P-type Pb(II) efflux ATPase, <i>pbrB</i>, which encodes a predicted integral membrane protein and <i>pbrC</i>, which encodes a predicted prolipoprotein signal peptidase. The expression of the operon is regulated by the repressor <i>pbrR</i>. As a MerR like regulator, its stimulates the transcription of the operon in the presence of Pb<sup>2+</sup> Borremans <EM>et al.</EM>, 2001). |
− | Our sensor system | + | Our sensor system combines <i>pbrR</i>under the control of a constitutive promoter and the <i>pbrA</i> promoter for the lead depending expression of <i>sfGFP</i>.</p> |
− | </p> | + | |
+ | |||
<h3>References</h3> | <h3>References</h3> | ||
− | + | <div class="references"> | |
+ | <p id=" Abdallah2002"> Abdallah, A. T. and Moustafa, M. A. (2002): Accumulation of lead and cadmium in the marine prosobranchNeritisaxtilis, chemicall analysis, light and electron microscopy. Environmental Pollution, 116, 185-191.</p> | ||
+ | <p id="Bergeson2008"> Bergeson, L. L. (2008). "The proposed lead NAAQS: Is consideration of cost in the clean air act's future?". Environmental Quality Management 18: 79–84. :10.1002/tqem.20197 .</p> | ||
+ | <p id="N.L. Brown et al.2003"> Borremans B., Hobman J. L., Provoost A., Brown N. L., van der Lelie D. (2001), Cloning and Functional Analysis of the pbr Lead Resistance Determinant of Ralstoniametallidurans CH34, J. Bacteriol., 183, 5651 – 5658 | ||
+ | </p> | ||
+ | <p id="EPA"> EPA Health Effects: How Lead Affects the body, checked on 2015-09-17. </p> | ||
+ | <p id=" Ferner2001"> Ferner D.J., (2001)Toxicity, heavy metals.eMed J.;2(5):1</p> | ||
+ | <p id=" Golub2005"> Golub, M. S., (2005). "Summary".Metals, fertility, and reproductive toxicity.ISBN 978-0-415-70040-5.</p> | ||
+ | <p id="WHO Guidelines for Drinking water"> WHO Guidelines for Drinking-water Quality fourth edition, checked on 2015-09-09. </p> | ||
+ | <p id="WHO"> WHO lead poisoning and health, fact sheet number 379, reviewed August 2015, checked on 2015-09-17. | ||
+ | </p> | ||
</div> | </div> | ||
− | + | </div> | |
<div id="mercury" style="display: none"> | <div id="mercury" style="display: none"> | ||
<h3>Occurrence</h3> | <h3>Occurrence</h3> | ||
− | + | <p> Mercury is found in water, typically as methylmercury, which is build out of inorganic mercury by different marine bacteria <EM>Pseudomonas spp.</EM> under aerobic conditions. Additional mercury(II)chloride with a high solubility, and mercury sulfide are found in water. The main natural source of Mercury exposure is through volcanic activity (WHO 2005). Additional, there are many kinds of emission caused by humans. For example mercury contamination can be caused by medical waste (damaged measurement instruments), fluorescent-lamps, chloralkali plants and thermal power plants (Verma <i>et al.</i>, 2013). The natural occurring concentration of mercury in groundwater and surface water are in general less than 0.5 µg/L but can rise to higher concentrations by local mineral deposit. Due to volcanic activity, the mercury concentration in water can rise frequently up to 5.5 µg/L (Izu Oshima Island in Japan) (WHO, 2005).</p> | |
<h3>Health effects</h3> | <h3>Health effects</h3> | ||
− | + | <p>In the environment, mercury is one of the most toxic elements (L.A. Rojas, 2011). The most toxic compounds are organometallic mercury molecules like methylmercury and dimethylmercury, because they can easily permeate the cellular membrane. These organometallic compounds are better soluble in lipids. Because of this fact, it is easier to permeate the cellular membrane. Acute effects of a mercury intoxication can range from diseases of the liver, kidney, gastrointestinal tract, neuromuscular and neurological problems. Inorganic mercury accumulates in the kidneys and has a long biological half-life, before it is not detectable anymore. In contrast to organic mercury, inorganic mercury is not able to cross the blood-brain barrier or blood-placenta barrier, so it accumulate in the organs (Park <i>et al.</i>, 2012). A chronic intoxication of mercury results in kidney changes, changes in the central nervous system and other effects like cancer (Holmes <i>et al.</i>, 2009, WHO 2005). Additional studies show that mercury generates chromosomal aberrances (WHO, 2005). In addition, a relation between an early exposure of mercury and late initial of Alzheimer`s and other neurodegenerative diseases are discussed (Park <i>et al.</i>, 2012). </p> | |
<h3>Detection</h3> | <h3>Detection</h3> | ||
− | <p> | + | <p>Mercury can be detected by atomic absorption spectrometry with a detection limit of 5 µg/L and the Inductively Coupled Plasma Method with a detection level of 0.6 µg/L (WHO 2005). In addition, there are different chemical and biological test systems. One of these systems is the detection by ELISA with mercury specific antibodies (Wylie <i>et al.</i>, 1991). </p> |
<h3>Our mercury biosensor</h3> | <h3>Our mercury biosensor</h3> | ||
− | <p>For our sensor we use | + | <p>For our sensor, we use the <i>mer</i> operator from <EM>Shigella flexneri</EM> R100 plasmid <i>Tn21</i> (<a href="http://parts.igem.org/Part: BBa_K346002" target="_blank"> BBa_K346002 </a>) and its regulator <i>merR</i> (<a href="http://parts.igem.org/Part: BBa_K346001" target="_blank"> BBa_K346001 </a>) constructed by the iGEM team Peking 2010. The MerR functions as an activator and regulates its own transcription (N.L. Brown <i>et al.</i>, 2003). Our sensor system combines <i>merR</i> under the control of a constitutive promoter and the <i>merT</i> promoter for the mercury depending expression of <i>sfGFP</i>. </p> |
+ | |||
<h3>References</h3> | <h3>References</h3> | ||
− | + | <div class="references"> | |
− | Holmes, P. ; James K.A.F.; Levy, L.S. (2009): Is low-level environmental mercury exposure of concern to human health? In SCIENCE OF THE TOTAL ENVIRONMENT 408 ( 2) pp. 171-182. | + | <p id=" WHO 2005 "> WHO (2005): Mercury in Drinking-water Background document for development of WHO Guidelines for Drinking-water Quality, checked 20.08.15</p> |
− | Brown, Nigel L.; Stoyanov, , Jivko V.;Kidd,Stephen P.;Hobman; Jon L. (2003): The MerR family of transcriptional regulators. In FEMS Microbiology Reviews, 27 ( 2) pp.145-163. | + | <p id=" Holmes et al., 2009"> Holmes, P. ; James K.A.F.; Levy, L.S. (2009): Is low-level environmental mercury exposure of concern to human health? In SCIENCE OF THE TOTAL ENVIRONMENT 408 ( 2) pp. 171-182.</p> |
− | Rojas, LA.; | + | <p id="N.L. Brown et al. 2003"> Brown, Nigel L.; Stoyanov, , Jivko V.;Kidd,Stephen P.;Hobman; Jon L. (2003): The MerR family of transcriptional regulators. In FEMS Microbiology Reviews, 27 ( 2) pp.145-163.</p> |
− | Verma, Rashmi; Dwivedi, Pratima (2013): Heavy metal water pollution- A case study. Recent Research in Science and Technology 2013, 5(5) pp.98-99. | + | <p id=" L.A. Rojas, 2011"> Rojas, LA.; Yanez, Carolina; Gonzalez, Myriam; Lobos, Soledad; Smalla, Kornelia; Seeger, Michael (2011). Characterization of the Metabolically Modified Heavy Metal-Resistant Cupriavidus metallidurans Strain MSR33 Generated for Mercury Bioremediation. PLOS ONE, 6 (3).</p> |
− | Park, JD.; Zheng, Wei (2012). Human exposure and health effects of inorganic and elemental mercury. | + | <p id=" Verma et al.2013"> Verma, Rashmi; Dwivedi, Pratima (2013): Heavy metal water pollution- A case study. Recent Research in Science and Technology 2013, 5(5) pp.98-99. Park, JD.; Zheng, Wei (2012). Human exposure and health effects of inorganic and elemental mercury. In Journal Of Preventive Medicine And Public Health, 45 (6) pp. 344-352. </p> |
− | Wylie, Dwane E.; Carlson, Larry D.; Carlson, Randy; Wagner, Fred W.; Schuster, Sheldon M. (1991). Detection of mercuric ions in water by ELISA with a mercury-specific antibody. Analytical Biochemistry, 194 (2) pp. 381-387. </p> | + | <p id=" Wylie et al. 1991"> Wylie, Dwane E.; Carlson, Larry D.; Carlson, Randy; Wagner, Fred W.; Schuster, Sheldon M. (1991). Detection of mercuric ions in water by ELISA with a mercury-specific antibody. Analytical Biochemistry, 194 (2) pp. 381-387. </p> |
− | + | </div> | |
+ | </div> | ||
+ | |||
<div id="nickel" style="display: none"> | <div id="nickel" style="display: none"> | ||
<h3>Occurrence</h3> | <h3>Occurrence</h3> | ||
− | <p>The amount of natural occurring nickel is quite low even if it is | + | <p>The amount of natural occurring nickel in comparison to other heavy metals is quite low even if it is an element of the Earth’s crust. Therefore, small amounts of it are found in food, water, soil and air. Nickel concentration in drinking water is normally less than 0.02 mg/L, although through releases from taps and fittings the nickel may accumulate to concentrations up to 1 mg/L. In special cases of release from natural or industrial nickel deposits in the ground, there may be higher concentrations in drinking-water. Through unintended release the concentration can be higher than the guideline value of 0.07 mg/L (WHO: Guidelines for Drinking-water Quality, Fourth Edition) |
− | Nickel | + | |
</p> | </p> | ||
<h3>Health effects</h3> | <h3>Health effects</h3> | ||
− | <p> | + | <p>Even though nickel is essential for mammals and a part of human nutrition, it may cause dermatitis as well as itching of fingers, hands and forearms by some people, who had long term skin contact. The main source of nickel exposure is food or water, but most people have contact to nickel trough everyday products as jewelry or stainless steel dishware or trough smoking tobacco(US; EPA <i>et al.</i>, 2013). In Germany most drinking water pollutions by nickel happen in the last meters of the plumbing system. Wrong tapware is the main source of nickel contamination in drinking water. |
<h3>Detection</h3> | <h3>Detection</h3> | ||
− | <p>The two most commonly used analytical methods for nickel in water are | + | <p>The two most commonly used analytical methods for nickel in water are atomic absorption spectrometry and inductively coupled plasma atomic emission spectrometry. Inductively coupled plasma atomic emission spectroscopy is used for the determination of nickel detection limit of about 10 μg/L (ISO, 1996). Flame atomic absorption spectrometry is suitable in the range of 0.5–100 μg/L (ISO, 1986). A limit of detection of 0.1 μg/L can be achieved using inductively coupled plasma mass spectrometry. Alternatively, electrothermal atomic absorption spectrometry can be used. (cavillona 2005)</p> |
<h3>Our nickel biosensor</h3> | <h3>Our nickel biosensor</h3> | ||
− | <p>For our nickel sensor system we used the rcn-operon from E. coli which | + | <p>For our nickel sensor system we used the <i>rcn</i>-operon from <i>E. coli</i> which encodes a nickel- and cobalt-efflux system with a high sensitivity to nickel. |
+ | In the absence of Nickel the respressor RcnR regonizes the operator site and blocks transcription of the operon, while in the presence of nickel it is abadoned due to a conformational change. | ||
+ | Our sensor system combines <i>rcnR</i> under the control of a constitutive promoter and the <i>prcnA</i> promoter for the nickel depending expression of sfGFP. | ||
+ | If Ni<sup>2+</sup>-ions bind to the repressor RcnR, it cannot attach to DNA and <i>rcnA</i> the nickel responsive promoter is activated. In the absence of nickel or cobalt, RcnR is bound to <i>rcnR</i> operator and blocks <i>rcnA</i> transcription. (EPA <i>et al.</i>, 2013; Blaha <i>et al.</i>, 2011; Iwig <i>et al.</i>, 2006) Our output signal works through fluorescence.</p> | ||
<h3>References</h3> | <h3>References</h3> | ||
− | + | <div class="references"> | |
− | Blaha, Didier; Arous, Safia; Blériot, Camille; Dorel, Corinne; Mandrand-Berthelot, Marie-Andrée; Rodrigue, Agnès (2011): The Escherichia coli metallo-regulator RcnR represses rcnA and rcnR transcription through binding on a shared operator site: Insights into regulatory specificity towards nickel and cobalt. In Biochimie 93 (3), pp. 434–439. DOI: 10.1016/j.biochi.2010.10.016. | + | <p id=" Blaha et al. 2011"> Blaha, Didier; Arous, Safia; Blériot, Camille; Dorel, Corinne; Mandrand-Berthelot, Marie-Andrée; Rodrigue, Agnès (2011): The <i>Escherichia coli</i> metallo-regulator RcnR represses <i>rcnA</i> and <i>rcnR</i> transcription through binding on a shared operator site: Insights into regulatory specificity towards nickel and cobalt. In Biochimie 93 (3), pp. 434–439. DOI: 10.1016/j.biochi.2010.10.016.</p> |
− | cavillona (2005): Nickel in Drinking-water, checked on 9/9/2015. | + | <p id=" cavillona 2005"> cavillona (2005): Nickel in Drinking-water, checked on 9/9/2015. </p> |
− | EPA, U. S.; OAR; Office of Air Quality Planning and Standards (2013): Nickle Compounds | Technology Transfer Network Air Toxics Web site | US EPA. Available online at http://www.epa.gov/airtoxics/hlthef/nickel.html, updated on 10/18/2013, checked on 9/10/2015. | + | <p id=" EPA, U.S. ">EPA, U. S.; OAR; Office of Air Quality Planning and Standards (2013): Nickle Compounds | Technology Transfer Network Air Toxics Web site | US EPA. Available online at http://www.epa.gov/airtoxics/hlthef/nickel.html, updated on 10/18/2013, checked on 9/10/2015. </p> |
− | Guidelines for Drinking-water Quality, Fourth Edition, checked on 9/9/2015. | + | <p id=" Guidelines for Drinking-water Quality, Fourth Edition"> Guidelines for Drinking-water Quality, Fourth Edition, checked on 9/9/2015.</p> |
− | Iwig, Jeffrey S.; Rowe, Jessica L.; Chivers, Peter T. (2006): Nickel homeostasis in Escherichia coli - the rcnR-rcnA efflux pathway and its linkage to NikR function. In Molecular microbiology 62 (1), pp. 252–262. DOI: 10.1111/j.1365-2958.2006.05369.x. | + | <p id=" Iwig et al. 2006"> Iwig, Jeffrey S.; Rowe, Jessica L.; Chivers, Peter T. (2006): Nickel homeostasis in Escherichia coli - the rcnR-rcnA efflux pathway and its linkage to NikR function. In Molecular microbiology 62 (1), pp. 252–262. DOI: 10.1111/j.1365-2958.2006.05369.x. kreusche: Trinkwasser-Installation 27.6.07 Endfassung.qxd, checked on 9/10/2015. </p> |
− | kreusche: Trinkwasser-Installation 27.6.07 Endfassung.qxd, checked on 9/10/2015. | + | <p id=" ISO, 1996"> ISO, 1996 US: Technical Factsheet on: Nickel, checked on 9/9/2015. </p> |
− | US: Technical Factsheet on: Nickel, checked on 9/9/2015. | + | </div> |
− | </p> | + | </div> |
− | + | </div> | |
− | + | </div> | |
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− | <a type="button" class="btn btn-default btn-next" href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Results/HeavyMetals"><img src="https://static.igem.org/mediawiki/2015/ | + | <a type="button" class="btn btn-default btn-next" href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Results/HeavyMetals"><img src="https://static.igem.org/mediawiki/2015/0/06/Bielefeld-CeBiTec_HeavyMetals_transparent.png"><p>Results</p></a> |
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− | <a type="button" class="btn btn-default btn-next" href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/DateRapeDrugs"><img src="https://static.igem.org/mediawiki/2015/ | + | <a type="button" class="btn btn-default btn-next" href="https://2015.igem.org/Team:Bielefeld-CeBiTec/Project/DateRapeDrugs"><img src="https://static.igem.org/mediawiki/2015/4/46/Bielefeld-CeBiTec_DateRapeDrugs_transparent.png"><p>Anything beyond heavy metals?</p></a> |
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Latest revision as of 13:34, 30 October 2015
Heavy Metals
We detect several heavy metals with a single test strip.
Heavy metals have been part in a lot of iGEM projects over the last years, so why work with them again?
Heavy metals are still a major problem. Therefore, they have been part in a lot of iGEM projects. There are many concepts to create heavy metal sensors. Some of them work extraordinary well. But most of these sensors never made it to real world applications. We aim to make a use of well characterized sensors as well as concepts and new ideas. All this sensor systems shell work on the same principle, so that we can use them to create a modular easy to handle paper based cell free test strip for detection of more substances, heavy metals in this case, in parallel. "In my opinion the test stripe system has great potential in the field of monitoring contamination in industrial wastewater. It`s a fast and easy available system for qualitative control of several heavy metals.” (Dr.rer.nat. Andreas Bermpohl, manager of Biotec GmbH)
Why heavy metals? Heavy metals are part of Earth’s crust. Therefore, they do occur naturally in our environment. (Heavy Metals - Lenntech) In low doses some of them as copper or nickel are even essential trace elements for animals and humans (Rashmi Verma and Pratima Dwivedi 2013). A major problem is their bioaccumulation, which leads to toxicity and long term effects which include fatal diseases like cancer (Martin et al. 2009), Parkinson`s or Alzheimer’s disease (Gaggelli et al. 2006) (figure 1).
Which heavy metals? The heavy metal sensors we chose for detection are specific to arsenic, copper, chromium, lead, mercury and nickel. Their concentrations in drinking water are regulated by the WHO, because of their immediate and long term health effects (figure 2).
Our biosensors We decided to work with already existing, well-characterized sensors as well as with established but not well-characterized concepts of other teams and moreover create new sensor systems. Therefore, we established a basic construction plan for our sensor systems, which is based on a promoter with a specific operator region in front of a super folder GFP (sfGFP), which was used for detection trough fluorescence analysis. In addition we used fitting activators or repressors for our inducible promoters under the control of BBa_K608002, which consists of a constitutive promoter with a strong ribosomal binding site (RBS) (figure 3). We combined these into a device consisting of constitutive promoter and RBS reverse and the promoter and operator region in upstream of the sfGFP. So we have repressor or activator constitutively expressed in reverse orientation. This was done to minimize the background transcription of the inducible system in upstream of our heavy metal promoter operator system. In addition, these devices are optimized for the usage in a cell free protein synthesis(CFPS). This is the basis for the development of cell free biosensors on a test strip, which can be used to detect several heavy metals at once in the open field.
Click on the test strip for more information about the heavy metals and how they can be detected: