Difference between revisions of "Team:UT-Tokyo"

 
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<h2> Welcome to iGEM 2015! </h2>
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<p>Your team has been approved and you are ready to start the iGEM season! </p>
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<h4>Before you start: </h4>
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<p> Please read the following pages:</p>
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<li>  <a href="https://2015.igem.org/Requirements">Requirements page </a> </li>
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<li> <a href="https://2015.igem.org/Wiki_How-To">Wiki Requirements page</a></li>
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<h2>PROJECT DISCRIPTION</h2>
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<p>How do Zebrafish get their stripes? Why do we have only 5 digits on each hand?
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Here's one possible answer: Turing Pattern.
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Turing Pattern is a type of spatial pattern suggested by the British mathematician Alan Turing. He proposed that these patterns could be created by the network of two chemicals which have different diffusion rate. These two molecules are called the activator and inhibitor.
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Because of its simplicity, the theory has attracted scientist in many fields, and thus various research has been carried out in the last 60 years. However, it was not easy to prove directly if those patterns are produced by the reaction-diffusion systems or another mechanism. Living systems are so complex that most research was exclusively theoretical. Biologists still face a big problem: identification of proper molecules acting as activator and inhibitor.
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We therefore reconstructed a Turing system using two advantages of synthetic biology; controllability and biological directness. By letting whole E. coli cells, whose motility were controlled, communicate with each other, we succeeded in making the whole system work more identically than any previous researches. This project should surely be a great step for understanding more about morphology and some other related fields of science. Now, the new door of synthetic biology has opened and awaits you to come in!
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<h4> Styling your wiki </h4>
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<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
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<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
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<h4> Editing your wiki </h4>
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<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
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<p> <a href="https://2015.igem.org/wiki/index.php?title=Team:UT-Tokyo&action=edit"> Click here to edit this page! </a></p>
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<p>See tips on how to edit your wiki on the <a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation</a> page.</p>  
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              <p>Click here to start Animation</p>
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            <a href='https://2015.igem.org/Team:UT-Tokyo/Achievement'><span style='background-image:url(https://static.igem.org/mediawiki/2015/9/92/UT_TOKYO_Achievement.png)'></span></a>
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<h4>Templates </h4>
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<p> This year we have created templates for teams to use freely. More information on how to use and edit the templates can be found on the
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            <a href='https://2015.igem.org/Team:UT-Tokyo/Description'><span style='background-image:url(https://static.igem.org/mediawiki/2015/a/af/UT_TOKYO_Description.png)'></span></a>
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<a href="https://2015.igem.org/TemplatesforTeams_Code_Documentation">Template Documentation </a> page.</p>  
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            <span style='background-image:url(https://static.igem.org/mediawiki/2015/e/e6/UT_TOKYO_Modeling.png)'></span>
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            <ul>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Modeling#top'>Top<p>The outline of our modeling is shown here.</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Modeling#system'>Our system<p>What we did for our team is mainly written here.</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Modeling#system2'>Another system<p>Analysis of the model different from the main system.</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Modeling#mathematics'>Mathematics<p>Some explanation and knowledge of the analysis using mathematics.</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Modeling#parameters'>Parameters<p>How we determined parameters for our model.</p></a></li>
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            </ul>
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<h4>Tips</h4>
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<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Parts'>Parts<p>Introducing our new baby-parts and improved parts</p></a></li>
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<li>Be clear about what you are doing and how you plan to do this.</li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Experiment#labnote'>Lab Note<p>Our struggles in Lab.</p></a></li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Experiment#protocol'>Protocol<p>Protocol!</p></a></li>
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away. </li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2015.igem.org/Calendar_of_Events">iGEM 2015 calendar</a> </li>
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<li>Have lots of fun! </li>
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</ul>  
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            <span style='background-image:url(https://static.igem.org/mediawiki/2015/4/46/UT_TOKYO_Project.png)'></span>
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            <ul>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Project#introduction'>Introduction
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              <p>
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                Project Overview<br />
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                Turing Mechanism<br />
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                Advantage Of Synthetic Biological Approach<br />
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              </p>
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            </a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Project#strategy'>Strategy
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                how we tackled with the pattern formation
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            </a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Project#system'>System
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                more detailed and concreted explanation of Strategy
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            </a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Project#result'>Result<p>RESULT!!!</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Project#application'>Application<p>How much our project has potential.</p></a></li>
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<h4>Inspiration</h4>
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<p> You can also view other team wikis for inspiration! Here are some examples:</p>
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<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
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                <li><a><img src="https://static.igem.org/mediawiki/2015/7/71/UT_TOKYO_Slide-1.jpg" alt="" /></a></li>
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<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
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                <li><a><img src="https://static.igem.org/mediawiki/2015/b/b5/UT_TOKYO_Slide-2.jpg" alt="" /></a></li>
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<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
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                <li><a><img src="https://static.igem.org/mediawiki/2015/2/21/UT_TOKYO_Slide-3.jpg" alt="" /></a></li>
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<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
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                <li><a><img src="https://static.igem.org/mediawiki/2015/b/b9/UT_TOKYO_Slide-4.jpg" alt="" /></a></li>
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<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
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              </ul>
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<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
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            </div>
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          </div>
  
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<h4> Uploading pictures and files </h4>
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<p> You can upload your pictures and files to the iGEM 2015 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
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            <span style='background-image:url(https://static.igem.org/mediawiki/2015/b/b7/UT_TOKYO_Policyandpractice.png)'></span>
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When you upload, set the "Destination Filename" to <code>Team:YourOfficialTeamName/NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
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            <ul>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Practices#overview'>Overview<p>Have you ever thought about Intellectual Property Rights?</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Practices#problem'>Problem Solving<p>Interview with real experience and useful survey</p></a></li>
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            <li><a href='https://2015.igem.org/Team:UT-Tokyo/Practices#public'>Public <br /> Participation<p>Simple survey on iGEM and Synbio, poster session</p></a></li>
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            </ul>
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<a href="https://2015.igem.org/Special:Upload">CLICK HERE TO UPLOAD FILES</a>
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          </div>
  
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            <a href='https://2015.igem.org/Team:UT-Tokyo/Team'><span style='background-image:url(https://static.igem.org/mediawiki/2015/7/79/UT_TOKYO_Team.png)'></span></a>
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            <a href='https://2015.igem.org/Team:UT-Tokyo/Attribution'><span style='background-image:url(https://static.igem.org/mediawiki/2015/c/c2/UT_TOKYO_Attribution.png)'></span></a>
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            <a href='https://2015.igem.org/Team:UT-Tokyo/Collaborations'><span style='background-image:url(https://static.igem.org/mediawiki/2015/3/3b/UT_TOKYO_Collaboration.png)'></span></a>
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Latest revision as of 11:20, 13 November 2015