Difference between revisions of "Team:Kent/Modeling"

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<p>Our Matlab code can be found here: <a href="    ">Kent15_Model.m</a></p>
 
<p>Our Matlab code can be found here: <a href="    ">Kent15_Model.m</a></p>
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<a name="c6"></a><h3 align="References"> S  </h3>
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Sivanathan, V., & Hochschild, A. (2012). Generating extracellular amyloid aggregates using E. coli cells. Genes & development, 26(23), 2659-2667.
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Elowitz, M. B., Surette, M. G., Wolf, P. E., Stock, J. B., & Leibler, S. (1999). Protein Mobility in the Cytoplasm of Escherichia coli. Journal of bacteriology,181(1), 197-203.
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Philipse, A. P. (2011). Notes on Brownian Motion. Utrecht University, Debye Institute, Van’t Hoff Laboratory.
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Barlett, V. R., Hoyuelos, M., & Mártin, H. O. (2013). Monte Carlo simulation with fixed steplength for diffusion processes in nonhomogeneous media. Journal of Computational Physics, 239, 51-56.
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Xue, W. F., Homans, S. W., & Radford, S. E. (2008). Systematic analysis of nucleation-dependent polymerization reveals new insights into the mechanism of amyloid self-assembly. Proceedings of the National Academy of Sciences,105(26), 8926-8931.
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Knowles, T. P., Waudby, C. A., Devlin, G. L., Cohen, S. I., Aguzzi, A., Vendruscolo, M., ... & Dobson, C. M. (2009). An analytical solution to the kinetics of breakable filament assembly. Science, 326(5959), 1533-1537.
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Revision as of 17:19, 6 September 2015


iGEM Kent 2015

Modeling

Modeling is important as it allows us to describe the system mathematically. If we change some of the parameters in our system we can see how this will affect the system, this is especially important when the some of the parameters are unknown. The main aim of our model is to demonstrate the production of our nanowires in an interactive and interesting way.



More to come soon...