Difference between revisions of "Team:Bielefeld-CeBiTec/Media"
Line 468: | Line 468: | ||
<div class="panel-body"> | <div class="panel-body"> | ||
<ul> | <ul> | ||
− | ... | + | <li>250 mM TRIS-HCl</li> |
+ | <li>1.92 M Glycine</li> | ||
+ | <li>1 % (w/v) SDS</li> | ||
+ | <li>pH 8.3</li> | ||
+ | </ul> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | <div class="panel panel-default"> | ||
+ | <div class="panel-heading"> | ||
+ | <h4 class="panel-title"> | ||
+ | <a data-toggle="collapse" href="#stainSDS">Staining solution for SDS-PAGE</a> | ||
+ | </h4> | ||
+ | </div> | ||
+ | <div id="stainSDS" class="panel-collapse collapse"> | ||
+ | <div class="panel-body"> | ||
+ | <ul> | ||
+ | <li>2 g/L Coomassie Brilliant Blue R250</li> | ||
+ | <li>0.5 g/L Coomassie Brilliant Blue G250</li> | ||
+ | <li>25 % (v/v) Isopropanol</li> | ||
+ | <li>10 % (v/v) Acetic acid</li> | ||
</ul> | </ul> | ||
</div> | </div> | ||
Line 477: | Line 498: | ||
<div class="panel-heading"> | <div class="panel-heading"> | ||
<h4 class="panel-title"> | <h4 class="panel-title"> | ||
− | <a data-toggle="collapse" href="# | + | <a data-toggle="collapse" href="#PBJR">6x PBJR for preparation of SDS-PAGE samples</a> |
+ | </h4> | ||
+ | </div> | ||
+ | <div id="PBJR" class="panel-collapse collapse"> | ||
+ | <div class="panel-body"> | ||
+ | <ul> | ||
+ | <li>7 ml Tris-HCl</li> | ||
+ | <li>3 ml 37 % Glycerol</li> | ||
+ | <li>0.5 M SDS</li> | ||
+ | <li>0.93 g Dithiothreitol</li> | ||
+ | <li>1.2 mg Bromophenol blue | ||
+ | |||
+ | </ul> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | <div class="panel panel-default"> | ||
+ | <div class="panel-heading"> | ||
+ | <h4 class="panel-title"> | ||
+ | <a data-toggle="collapse" href="#stackingGel">Stacking gel for SDS-PAGE</a> | ||
+ | </h4> | ||
+ | </div> | ||
+ | <div id="stackingGel" class="panel-collapse collapse"> | ||
+ | <div class="panel-body"> | ||
+ | <ul> | ||
+ | ... | ||
+ | </ul> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | <div class="panel panel-default"> | ||
+ | <div class="panel-heading"> | ||
+ | <h4 class="panel-title"> | ||
+ | <a data-toggle="collapse" href="#resolvingGel">Resolving gel for SDS-PAGE</a> | ||
</h4> | </h4> | ||
</div> | </div> | ||
− | <div id=" | + | <div id="resolvingGel" class="panel-collapse collapse"> |
<div class="panel-body"> | <div class="panel-body"> | ||
<ul> | <ul> |
Revision as of 00:03, 13 September 2015
Media & Buffers
All of our favorite recipes.
Media
- For 1 liter LB:
- 20 g LB powder
- Fill the bottle with deionized H2O
- For 1 L LB-plates:
- 18 g LB powder
- 16 g Select Agar
- Fill the bottle with deionized H2O
- Add the following components for 900 mL of distilled H2O:
- 20 g Trypton
- 5 g Bacto Yeast Extract
- 2 mL of 5 M NaCl
- 2.5 mL of 1 M KCl
- 10 mL of 1 M MgCl2
- 10 mL of 1 M MgSO4
- 20 mL of 1 M glucose
- For 1 L, combine
- 16 g tryptone
- 10 g yeast extract
- 5 g NaCl
- 22 mL KH2PO4
- 40 mL K2HPO4
- dissolve in water and titrate to pH = 7.0 with NaOH, autoclave
Buffers
- For each litre of solution:
- 242 g Tris Base (MW=121.1)
- 57.1 ml Glacial Acetic Acid
- 100 ml 0.5 M EDTA
- mix Tris with stir bar to dissolve in about 600 ml of ddH2O.
- add the EDTA and Acetic Acid.
- bring final volume to 1 l with ddH20.
- store at room temperature.
- Note: Final (1x) working concentration:
- 0.04 M Tris - Acetate
- 0.001 M EDTA
- For each 200 ml of solution:
- 5.844 g NaCl
- 0.272 g imidazole
- 5.8 ml of 86 % glycerol
- 0.406 g MgCl2
- 0.2 g lysozyme
- Add all these ingredients to a 50 mM sodium phosphate buffer (pH 8.0). Prior to use add DTT to a final concentration of 1mM and tween 20 to a final concentration of 0.1 %.
- store at room temperature.
- Note: Final (1x) working concentration:
- 50 mM Sodiumphosphate
- 500 mM NaCl
- 20 mM imidazole
- 2.5 % glxcerol
- 1 mM DTT
- 10 mM MgCl2
- 0.1 % tween 20
- 1 mg/ml lysozyme
- For each litre of solution:
- 29.22g NaCl
- 1.36 g imidazole
- 29 ml of 86 % glycerol
- Add all these ingredients to a 50 mM sodium phosphate buffer (pH 8.0). Prior to use add DTT to a final concentration of 1mM.
- store at room temperature.
- Note: Final (1x) working concentration:
- 50 mM sodium phosphate
- 500 mM NaCl
- 20 mM imidazole
- 2.5 % glycerol
- 1 mM DTT
- For each litre of solution:
- 17.53 g NaCl
- 13.6 g imidazole
- Add all these ingredients to a 20 mM sodium phosphate buffer (pH 7.4).
- store at room temperature.
- Note: Final (1x) working concentration:
- 20 mM sodium phosphate
- 300 mM NaCl
- 200 mM imidazole
- For each litre of solution:
- 50 g glucose
- Add the glucose to a 200 mM potassium phosphate buffer (pH 7.6). Prior to usage add DTT to a final concentration of 1 mM
- store at room temperature.
- Note: Final (1x) working concentration:
- 200 mM potassium phosphate
- 5 % glucose
- 1 mM DTT
Buffers
- S30A buffer is prepared according to Sun et al. 2013 and contains
- 14 mM Mg-glutamate
- 60 mM K-glutamate
- 50 mM TRIS
- S30 buffer (buffer A from Kwon and Jewett 2015) with lower TRIS concentration
- 14 mM Mg-glutamate
- 60 mM K-glutamate
- 10 mM TRIS
Stock solutions
- 1.5 M Spermidine and 1 M putrescine solutions are prepared according to supporting material from Yang et al. 2012a. Briefly, a total of 4.59 mL of autoclaved MilliQ water is added in small steps to a 1 g bottle of spermidine. After each step, the bottle is mixed vigorously and the liquid is poured into a beaker where it is continously stirred. After rinsing out the whole bottle, the homogenous solution is aliquoted, flash freezed and stored at -80 °C. The procedure is similar for putrescine, though volumes differ.
- NTP mixture is prepared from ATP, CTP, GTP and UTP stock solutions (100 mM) from Thermo Scientific. 20x NTP premix contains 30 mM of ATP and GTP, 18 mM CTP and UTP.
- 330 mM Phosphoenolpyruvate (PEP) stock solution is prepared and pH is adjusted with 5 M KOH according to supporting material from Yang et al. 2012a
Other
- 250 mM TRIS-HCl
- 1.92 M Glycine
- 1 % (w/v) SDS
- pH 8.3
- 2 g/L Coomassie Brilliant Blue R250
- 0.5 g/L Coomassie Brilliant Blue G250
- 25 % (v/v) Isopropanol
- 10 % (v/v) Acetic acid
- 7 ml Tris-HCl
- 3 ml 37 % Glycerol
- 0.5 M SDS
- 0.93 g Dithiothreitol
- 1.2 mg Bromophenol blue
- For 1 liter destaining solution:
- 450 mL ethanol
- 100 mL acetic acid
- Fill the bottle with deionized H2O