Difference between revisions of "Team:Hong Kong-CUHK/Results"
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− | + | <h1>Result</h1> | |
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− | < | + | <h2>Highlights</h2> |
− | <p>• We | + | <p>• We made the templates with flanking sequences of Magnetosome Forming Operons (MFO) for homologous recombination. The templates were successfully integrated into <i>Azotobacter vinelandii</i> genome and successfully expressed. </p> |
− | <p>• The insertion kit | + | <p>• The insertion kit was made as a biobrick (<a href="http://parts.igem.org/Part:BBa_K1648006">K1648006</a>). Also, GFP-nanobody has been added into Insertion Kit for characterization. Other teams who are working with magnetosome could employ the present Insertion Kit to express various proteins on magnetosome!</p> |
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− | < | + | <h2><b>Magnetosome Production</b> </h2> |
− | <p>1. We have PCR the flanking sequence of MFO, Recombination Template for mamAB Operon and Recombination Template for mamXY, mamGC and | + | <p>1. We have PCR the flanking sequence of MFO, Recombination Template for <i>mamAB</i> Operon and Recombination Template for <i>mamXY</i>, <i>mamGC</i> and <i>mms6</i> Operons (Figure 1). </p> |
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<div class="photocenter"> | <div class="photocenter"> | ||
− | <center> <img src = "https://static.igem.org/mediawiki/2015/b/ba/Cuhk_genephotofigure1.jpg" width=" | + | <center> <img src = "https://static.igem.org/mediawiki/2015/b/ba/Cuhk_genephotofigure1.jpg" width="400px" style="margin:0px 0px 0px 0px"></center> |
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− | <p | + | <p style="font-size:14px">Figure 1: The photo of 1% agarose gel electrophoresis. L: DNA ladder. Lane 1: PCR product of Recombination Template for <i>mamAB</i> Operon. Lane 2: PCR product of Recombination Template for <i>mamXY</i>, <i>mamGC</i> and <i>mms6</i> Operons. </p> |
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− | <p>2. The PCR product of Recombination Template for mamAB Operon was then ligated into pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648000"> | + | <p>2. The PCR product of Recombination Template for <i>mamAB</i> Operon was then ligated into pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648000">K1648000</a>, and ligated with promoter and double terminator in pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648002">BBa_K1648002</a>. They were verified by double digestion (Figure 2) and sequencing.</p> |
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<div class="photocenter"> | <div class="photocenter"> | ||
− | <center> <img src = "https://static.igem.org/mediawiki/2015/f/f9/Cuhk_genephotofigure2.jpg" width=" | + | <center> <img src = "https://static.igem.org/mediawiki/2015/f/f9/Cuhk_genephotofigure2.jpg" width="400px" style="margin:0px 0px 0px 0px"></center> |
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− | <p | + | <p style="font-size:14px">Figure 2: Checking of recombinant plasmid using double digestion. L: DNA ladder. Lane 1-3: Recombination Template for mamAB Operon (<a href="http://parts.igem.org/Part:BBa_K1648000">K1648000</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site. Lane 4-6: Recombination Template for <i>mamAB</i> Operon with Promotor and Terminator (<a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site.</p> |
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− | <p>3. The PCR product of Recombination Template for mamXY, mamGC and | + | <p>3. The PCR product of Recombination Template for <i>mamXY</i>, <i>mamGC</i> and <i>mms6</i> Operons was also ligated with promotor and double terminator in pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648003">K1648003</a>. They were confirmed by double digestion (Figure 3) and sequencing.</p> |
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<div class="photocenter"> | <div class="photocenter"> | ||
− | <center><img src = "https://static.igem.org/mediawiki/2015/1/11/Cuhk_genephotofigure3.jpg" width=" | + | <center><img src = "https://static.igem.org/mediawiki/2015/1/11/Cuhk_genephotofigure3.jpg" width="400px" style="margin:0px 0px 0px 0px"></center> |
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− | <p | + | <p style="font-size:14px">Figure 3: Checking of recombinant plasmid using double digestion. L: DNA ladder. Lane 1-3: Recombination Template for <i>mamXY</i>, <i>mamGC</i> and <i>mms6</i> Operons with Promoter and Terminator (<a href="http://parts.igem.org/Part:BBa_K1648003">K1648003</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site. </p> |
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− | <p>4. Expression | + | <p>4. Expression of Recombination Template for mamAB Operon with Promoter and Terminator (<a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a>). After introducing <a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a> into <i>Azotobacter vinelandii</i> by stable genome integration, every coding parts were successfully expressed. The expression of <a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a> was shown in SDS-PAGE (Figure 4).</p> |
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− | <p | + | <p style="font-size:14px">Figure 4: SDS-PAGE showing expression of Recombination Template for mamAB Operon with Promotor and Terminator (<a href="http://parts.igem.org/Part:BBa_K1648002">BBa_K1648002</a>) in Azotobacter vinelandii. L: Benchmark Protein ladder. Lane 1: Wild-type <i>Azotobacter vinelandii</i>. Lane 2: transformed <i>Azotobacter vinelandii</i>. Lane 2 shows 3 more bands compared to lane 1, in which the ~25 kDa band is the protein coded by chloramphenicol resistant gene in <a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a>, the ~15 kDa and ~ 13kDa bands are the protein coded by Recombination Template for mamAB Operon.</p> |
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− | <p>5. Amplification of different operons from Magnetospirillum gryphiswaldense (MSR-1) by PCR (Figure 5). The PCR products were purified for homologous recombination later on.</p> | + | <p>5. Amplification of different operons from <i>Magnetospirillum gryphiswaldense </i>(MSR-1) by PCR (Figure 5). The PCR products were purified for homologous recombination later on.</p> |
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<div class="photocenter"> | <div class="photocenter"> | ||
− | <center><img src = "https://static.igem.org/mediawiki/2015/b/b1/Cuhk_genephotofigure4.jpg" width=" | + | <center><img src = "https://static.igem.org/mediawiki/2015/b/b1/Cuhk_genephotofigure4.jpg" width="400px" style="margin:0px 0px 0px 0px"></center> |
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− | <p | + | <p style="font-size:14px">Figure 5: The photo of 1% agarose gel electrophoresis showing PCR products of operons in Magnetosome Island (MAI). L: DNA ladder. Lane 1: <i>mamHIEJKLMN</i>. Lane 2: <i>mamOPQRBSTU</i>. Lane 3: <i>mamPQRBSTU</i>. Lane 4: <i>mamYXZ ftsZ</i>-like. Lane 5: <i>mamGFDC</i>. Lane 6: <i>mamGFD</i>. Lane 7: </i>mms6 operon</i>. </p> |
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− | <p><b>• Ongoing effort is the homologous recombination of <a href="http://parts.igem.org/Part:BBa_K1648002"> | + | <p><b>• Ongoing effort is the homologous recombination of <a href="http://parts.igem.org/Part:BBa_K1648002">K1648002</a> in transformed <i>Azotobacter vinelandii</i>.</b></p> |
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− | < | + | <h2Insertion Kit</h2> |
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<p>1. We have made the Insertion Kit (Figure 6A) and amplified the GFP-nanobody (Figure 6B) by PCR.</p> | <p>1. We have made the Insertion Kit (Figure 6A) and amplified the GFP-nanobody (Figure 6B) by PCR.</p> | ||
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− | <p | + | <p style="font-size:14px">Figure 6: The photo of 1% agarose gel electrophoresis showing PCR products. (A) L: DNA ladder. Lane 1: PCR products of linear Insertion Kit. (B) L: DNA ladder. Lane 2: GFP-nanobody.</p> |
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− | <p>2. The PCR product of GFP-nanobody was then ligated into pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648005"> | + | <p>2. The PCR product of GFP-nanobody was then ligated into pSB1C3 backbone, forming <a href="http://parts.igem.org/Part:BBa_K1648005">K1648005</a>. Double digestion (Figure 7) and sequencing verified it.</p> |
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<div class="photocenter"> | <div class="photocenter"> | ||
− | <center><img src = "https://static.igem.org/mediawiki/2015/8/85/Cuhk_genephotofigure6.jpg" width=" | + | <center><img src = "https://static.igem.org/mediawiki/2015/8/85/Cuhk_genephotofigure6.jpg" width="400px" style="margin:0px 0px 0px 0px"></center> |
</div> | </div> | ||
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− | <p | + | <p style="font-size:14px">Figure 7: Checking of recombinant plasmid using double digestion. L: DNA ladder. Lane 1-3: GFP- nanobody (<a href="http://parts.igem.org/Part:BBa_K1648005">K1648005</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site.</p> |
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− | <p>3. J04450 was inserted into Insertion Kit, forming Insertion Kit for Fusing Protein of Interest to Magnetosome Membrane (<a href="http://parts.igem.org/Part:BBa_K1648004"> | + | <p>3. J04450 was inserted into Insertion Kit, forming Insertion Kit for Fusing Protein of Interest to Magnetosome Membrane (<a href="http://parts.igem.org/Part:BBa_K1648004">K1648004</a>) fulfilled the biobrick standard, while GFP-nanobody (<a href="http://parts.igem.org/Part:BBa_K1648006">K1648006</a>) was also added into Insertion Kit respectively. Double digestion (Figure 8) shows the expected result.</p> |
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− | <p | + | <p style="font-size:14px">Figure 8. Checking of recombinant Insertion Kit for Fusing Protein of Interest to Magnetosome Membrane (<a href="http://parts.igem.org/Part:BBa_K1648004">K1648004</a>) using double digestion. (A) L: DNA ladder. Lane 1-3: Insertion Kit for Fusing Protein of Interest to Magnetosome Membrane (<a href="http://parts.igem.org/Part:BBa_K1648004">K1648004</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site. (B) L: DNA ladder. Lane 1-3: Insertion kit with GFP-nanobody (<a href="http://parts.igem.org/Part:BBa_K1648006">K1648006</a>) without digestion; with single digestion at XbaI site; with double digestion cut at XbaI and PstI site. </font></p> |
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Revision as of 02:59, 19 September 2015