Difference between revisions of "Team:EPF Lausanne/Notebook/Yeast"

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                         </u1>
 
                         </u1>
  
−
                         <li <a href="#Integrate_reporter_plasmid">Integrate reporter plasmid</a></li>
+
                         <li <a href="#integrate_reporter_plasmid">Integrate reporter plasmid</a></li>
 
                         </u1>
 
                         </u1>
 +
                            <li><a href="#linearise_reporter_plasmid">Linearise the plasmid by PCR</a></li>
 
                             <li><a href="#synthesize_promoters">Synthesize promoters</a></li>
 
                             <li><a href="#synthesize_promoters">Synthesize promoters</a></li>
 
                             <li><a href="#PCRoverlaps_prom">Add Gibson overlaps to CYC promoters by PCR</a></li>
 
                             <li><a href="#PCRoverlaps_prom">Add Gibson overlaps to CYC promoters by PCR</a></li>
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             <div class="col-sm-9">
 
             <div class="col-sm-9">
  
−
    <!--PCR PDCAS9-->
+
<!--PCR PDCAS9-->
−
     <div id="integrate_pTPGI_dCas9_VP64" class="panel">  
+
     <div id="integrate_pTPGI_dCas9_VP64" class="panel">
 
     <h1><small>Integrate pTPGI_dCas9_VP64</small></br>Integrate pTPGI_dCas9_VP64</h1>
 
     <h1><small>Integrate pTPGI_dCas9_VP64</small></br>Integrate pTPGI_dCas9_VP64</h1>
−
         <p><small>We received plasmid pTPGI_dCas9_VP64 in bacteria from Addgene. We inoculated single colonies of bacteria in order to prepare glycerol stocks and minipreps. We performed a restriction analysis to check the identity of our plasmid. We linearised the plasmid by PCR, in order to integrate it into yeast genome.</small></p>
+
         <p><small>We received plasmid pTPGI_dCas9_VP64 in bacteria from Addgene. The plasmid was found from paper ... We inoculated single colonies of bacteria in order to prepare glycerol stocks and minipreps. We performed a restriction analysis to check the identity of our plasmid. We linearised the plasmid by PCR, in order to integrate it into yeast genome.</small></p>
  
 
             <h2>Materials and method</h2>
 
             <h2>Materials and method</h2>
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     </div>
 
     </div>
 
      
 
      
 +
<!--INTEGRATE REPORTER PLASMID - LINEARISE REPORTER PLASMID-->
 +
    <div id="linearise_reporter plasmid" class="panel">
 +
    <h1><small>Integrate reporter plasmid</small></br>Linearise reporter plasmid</h1>
 +
        <p><small>We received plasmid pCYC_yeGFP in bacteria from Addgene. The plasmid was found from ... We inoculated single colonies of bacteria in order to prepare glycerol stocks and minipreps. We performed a restriction analysis to check the identity of our plasmid. We linearised the plasmid by PCR, in order to integrate it into yeast genome.</small></p>
 +
 +
            <h2>Materials and method</h2>
 +
                <ul>
 +
                    <li>Glycerol stocks</li>
 +
                    <li>Miniprep</li>
 +
                    <li>Restriction analysis</li>
 +
                    <li>Polymerase Chain Reaction</li>
 +
                </ul>
 +
 +
            <h2>Results</h2>
 +
                <div id="divleft1">
 +
                    <img src="https://2015.igem.org/File:Gel_dCas9.png" style="width:80%">
 +
                </div>
 +
                <div id="divright1">
 +
                    <p><small>We used four different sets of enzymes for the restriction analysis. Linearized pCYC_yeGFP is expected to be 10'987 bp. We observe that the gel (fig.1) corresponds to the expected one (fig. 2). </br>
 +
                              The plasmid was linearised both with ... and ... prior to integration. We integrated each linearised plasmid to obtain two different yeast strains.
 +
                              </small></p>
 +
                </div>
 +
    </div>
 +
 +
 +
 +
<!--INTEGRATE REPORTER PLASMID - SYNTHESIZE PROMOTERS-->
 +
    <div id="synthesize_promoters" class="panel">
 +
    <h1><small>Integrate reporter plasmid</small></br>Synthesize promoters</h1>
 +
        <p><small>The promoter CYC#0 was already present in plasmid pCYC_yeGFP from Addgene. We synthesized three other promoters CYC#1, CYC#2 and CYC#3. The only differences between one another were the three gRNA SDSs c3, c6 and c7.</small></p>
 +
 +
            <h2>Materials and method</h2>
 +
                <ul>
 +
                    <li>Synthesis ??</li>
 +
                </ul>
 +
 +
            <h2>Results</h2>
 +
                <div id="divleft1">
 +
                    <img src="https://2015.igem.org/File:Gel_dCas9.png" style="width:80%">
 +
                </div>
 +
                <div id="divright1">
 +
                    <p><small>We obtain four different promoters CYC#0, CYC#1, CYC#2 and CYC#3 according to fig. ...
 +
                              </small></p>
 +
                </div>
 +
    </div>
  
  

Revision as of 18:23, 17 August 2015

EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits

saccharomyces cerevisiae

Integrate pTPGI_dCas9_VP64
Integrate pTPGI_dCas9_VP64

We received plasmid pTPGI_dCas9_VP64 in bacteria from Addgene. The plasmid was found from paper ... We inoculated single colonies of bacteria in order to prepare glycerol stocks and minipreps. We performed a restriction analysis to check the identity of our plasmid. We linearised the plasmid by PCR, in order to integrate it into yeast genome.

Materials and method

  • Glycerol stocks
  • Miniprep
  • Restriction analysis
  • Polymerase Chain Reaction
  • Yeast integration

Results

We used four different sets of enzymes for the restriction analysis. Linearized pTPGI_dCas9_VP64 is expected to be 10'987 bp. We observe that the gel (fig.1) corresponds to the expected one (fig. 2).
The plasmid was linearised both with EagI HF and NotI HF prior to integration. We integrated each linearised plasmid to obtain two different yeast strains.

Integrate reporter plasmid
Linearise reporter plasmid

We received plasmid pCYC_yeGFP in bacteria from Addgene. The plasmid was found from ... We inoculated single colonies of bacteria in order to prepare glycerol stocks and minipreps. We performed a restriction analysis to check the identity of our plasmid. We linearised the plasmid by PCR, in order to integrate it into yeast genome.

Materials and method

  • Glycerol stocks
  • Miniprep
  • Restriction analysis
  • Polymerase Chain Reaction

Results

We used four different sets of enzymes for the restriction analysis. Linearized pCYC_yeGFP is expected to be 10'987 bp. We observe that the gel (fig.1) corresponds to the expected one (fig. 2).
The plasmid was linearised both with ... and ... prior to integration. We integrated each linearised plasmid to obtain two different yeast strains.

Integrate reporter plasmid
Synthesize promoters

The promoter CYC#0 was already present in plasmid pCYC_yeGFP from Addgene. We synthesized three other promoters CYC#1, CYC#2 and CYC#3. The only differences between one another were the three gRNA SDSs c3, c6 and c7.

Materials and method

  • Synthesis ??

Results

We obtain four different promoters CYC#0, CYC#1, CYC#2 and CYC#3 according to fig. ...

EPFL 2015 iGEM bioLogic Logic Orthogonal gRNA Implemented Circuits