Difference between revisions of "Team:Bielefeld-CeBiTec/Project/HeavyMetals"

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  <h3>Our mercury biosensor</h3>
 
  <h3>Our mercury biosensor</h3>
     <p>For our sensor, we use parts (<a href="http://parts.igem.org/Part: BBa_K346002" target="_blank"> BBa_K346002 </a> and <a href="http://parts.igem.org/Part: BBa_K346001" target="_blank"> BBa_K346001) </a>  of the mercury sensor constructed by iGEM team Peking 2010. These Parts consist of the Mer operon from <EM>Shigella flexneri</EM> R100 plasmid Tn21, a mercury dependent operon. The expression of the Mer operon is regulated by the activator MerR. The MeR transcription however is regulated by itself. Mercury can bind to the C-terminal located cysteines and generates a conformal change to activate the expression (N.L. Brown et al.2003). Our mercury Sensor contains MerR, which is under control of a constitutive promoter and specific promoter MerT. sfGFP protein is used as measuring output signal and it´s transcription is controlled by the 5` untranslated region, which enhances the following reporter protein sfGFP.  </p>  
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     <p>For our sensor, we use parts (<a href="http://parts.igem.org/Part: BBa_K346002" target="_blank"> BBa_K346002 </a> and <a href="http://parts.igem.org/Part: BBa_K346001" target="_blank"> BBa_K346001) </a>  of the mercury sensor constructed by iGEM team Peking 2010. These Parts consist of the Mer operon from <EM>Shigella flexneri</EM> R100 plasmid Tn21, a mercury dependent operon. The expression of the Mer operon is regulated by the activator MerR. The MeR transcription however is regulated by itself. Mercury can bind to the C-terminal located cysteines and generates a conformal change to activate the expression (N.L. Brown <i>et al.</i>, 2003). Our mercury Sensor contains MerR, which is under control of a constitutive promoter and specific promoter MerT. sfGFP protein is used as measuring output signal and it´s transcription is controlled by the 5` untranslated region, which enhances the following reporter protein sfGFP.  </p>  
  
 
  <h3>References</h3>
 
  <h3>References</h3>
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   <p id=" WHO 2005 "> WHO (2005): Mercury in Drinking-water Background document for development of WHO Guidelines for Drinking-water Quality, checked 20.08.15</p>
 
   <p id=" WHO 2005 "> WHO (2005): Mercury in Drinking-water Background document for development of WHO Guidelines for Drinking-water Quality, checked 20.08.15</p>
 
<p id=" Holmes et al., 2009"> Holmes, P. ; James K.A.F.; Levy, L.S. (2009): Is low-level environmental mercury exposure of concern to human health? In SCIENCE OF THE TOTAL ENVIRONMENT 408 ( 2) pp. 171-182.</p>
 
<p id=" Holmes et al., 2009"> Holmes, P. ; James K.A.F.; Levy, L.S. (2009): Is low-level environmental mercury exposure of concern to human health? In SCIENCE OF THE TOTAL ENVIRONMENT 408 ( 2) pp. 171-182.</p>
<p id="N.L. Brown et al.2003"> Brown, Nigel L.; Stoyanov, , Jivko V.;Kidd,Stephen P.;Hobman; Jon L. (2003): The MerR family of transcriptional regulators. In FEMS Microbiology Reviews, 27 ( 2) pp.145-163.</p>
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<p id="N.L. Brown et al. 2003"> Brown, Nigel L.; Stoyanov, , Jivko V.;Kidd,Stephen P.;Hobman; Jon L. (2003): The MerR family of transcriptional regulators. In FEMS Microbiology Reviews, 27 ( 2) pp.145-163.</p>
 
<p id=" L.A. Rojas, 2011"> Rojas, LA.; Yanez, Carolina; Gonzalez, Myriam; Lobos, Soledad; Smalla, Kornelia; Seeger, Michael (2011). Characterization of the Metabolically Modified Heavy Metal-Resistant Cupriavidus metallidurans Strain MSR33 Generated for Mercury Bioremediation. PLOS ONE, 6 (3).</p>
 
<p id=" L.A. Rojas, 2011"> Rojas, LA.; Yanez, Carolina; Gonzalez, Myriam; Lobos, Soledad; Smalla, Kornelia; Seeger, Michael (2011). Characterization of the Metabolically Modified Heavy Metal-Resistant Cupriavidus metallidurans Strain MSR33 Generated for Mercury Bioremediation. PLOS ONE, 6 (3).</p>
 
<p id=" Verma et al.2013"> Verma, Rashmi; Dwivedi, Pratima (2013): Heavy metal water pollution- A case study. Recent Research in Science and Technology 2013, 5(5) pp.98-99. Park, JD.; Zheng, Wei (2012). Human exposure and health effects of inorganic and elemental mercury. In Journal Of Preventive Medicine And Public Health, 45 (6) pp. 344-352. </p>
 
<p id=" Verma et al.2013"> Verma, Rashmi; Dwivedi, Pratima (2013): Heavy metal water pollution- A case study. Recent Research in Science and Technology 2013, 5(5) pp.98-99. Park, JD.; Zheng, Wei (2012). Human exposure and health effects of inorganic and elemental mercury. In Journal Of Preventive Medicine And Public Health, 45 (6) pp. 344-352. </p>

Revision as of 14:28, 18 September 2015

iGEM Bielefeld 2015


Heavy Metals

We detect several heavy metals with a single test strip.


Heavy metals have been part in a lot of iGEM projects over the last years, so why work with them again?


survey result

Heavy metals
Heavy metals are part of earth’s crust and therefore natural occurring in our environment. (Heavy Metals - Lenntech) In low doses some of them as copper or nickel are even essential trace elements for animals and humans (Rashmi Verma and Pratima Dwivedi 2013). A major problem is their bioaccumulation which leads to toxicity and long term effects which include fatal diseases as cancer (Martin et al. 2009) Parkinson or Alzheimer’s disease (Gaggelli et al. 2006).

survey result

Our biosensors
We decided to work with already existing, well-characterized sensors as well as with established but not well-characterized concepts of other teams and moreover create new sensor systems. Therefore, we established a basic construction plan for our sensor systems, which is based on a promoter with a specific operator region in front of a super folder GFP (sfGFP), that was used for detection trough fluorescence analysis. In addition we used fitting activators or repressors for our inducible promoters under the control of BBa_K608002 which consists of a constitutive promoter with a strong ribosomal binding site (RBS). We combined these into a device consisting of constitutive promoter and RBS reverse and the promoter and operator region in front of the sfGFP. So we have repressor or activator constitutively express but reverse, to minimize background transcription of the inducible system in front of our heavy metal promoter operator system. In addition, these devices are optimized for the usage in a cell free protein synthesis (CFPS). This is the basis for the development of cell free biosensors on a test strip, that can be used to detect several heavy metals at one in the open field.

survey result

Detected heavy metals
The heavy metal sensors we chose for detection are specific to arsenic, copper, chromium, lead, mercury and nickel. Their concentrations in drinking water are regulated by the WHO, because of their immediate and longtime health effects.




Our motivation
We aim to make a use of well characterized sensors as well as concepts and new ideas. All this sensor systems shell work on the same principle, so that we can use them to create a modular easy to handle paper based cell free test strip for detection of more substances, heavy metals in this case, in parallel.

Part of our project was presenting our idea to experts who gave us feedback concerning the idea and practicability of our project. Because we are sensing heavy metal pollutions in drinking water the THW (Federal Agency for Technical Relief) came to our mind. The THW is a civil protection organization that provides logistical support, technical and humanitarian relief in foreign countries and technical relief in Germany as part of national civil protection measures. We talked to Dr. Christiane Bettin who is one of the 80.000 voluntary THW-experts and specialized in drinking water treatment and water analysis. We talked about the use of an easy to handle modular test strip for the detection of heavy metals. She explained that they are using photometrical analysis which are really quick but need equipment as testing reagents and most important a photometer. Our system would be interesting because it tests for several substances in parallel. Moreover when we talked about our selected sensors she immediately thought about exploratory missions and raw water assessment with the aim to find suitable drinking water sources. THW needs to work with Trinkwasserverordnung or WHO based drinking water guidelines and therefore our sensors need to detect the listed heavy metals.




Click on the test strip for more information about the heavy metals and how they can be detected:

teststrip