Difference between revisions of "Team:Hong Kong-CUHK/methods"
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− | <p>Our first construct is called Magnetosome Forming Operon (MFO). Different operons are involved in regulation of magnetosome formation[1]. Among them, it is the <i>mamAB</i> operon essential for magnetosome production. Other operons like <i>mamGFDC</i>, <i>mamXY</i> and <i>mms6</i> regulate size and shape of magnetite, and the biominerlization to facilitate the formation of magnetosome [2].<br> | + | <p>Our first construct is called Magnetosome Forming Operon (MFO). Different operons are involved in regulation of magnetosome formation[1]. Among them, it is the <i>mamAB</i> operon essential for magnetosome production. Other operons like <i>mamGFDC</i>, <i>mamXY</i> and <i>mms6</i> regulate size and shape of magnetite, and the biominerlization to facilitate the formation of magnetosome [2].<br><br> |
− | Therefore, we would only insert the <i>mamAB</i> operon from <i> Magnetospirillum gryphiswaldense </i> (MSG) to bacteria <i>Azotobacter vinelandii</i>, hoping to use minimal number of genes to produce functional magnetosomes. Future insight is given to make the magnetosome formation progress easier. <br> | + | Therefore, we would only insert the <i>mamAB</i> operon from <i> Magnetospirillum gryphiswaldense </i> (MSG) to bacteria <i>Azotobacter vinelandii</i>, hoping to use minimal number of genes to produce functional magnetosomes. Future insight is given to make the magnetosome formation progress easier. <br><br> |
Considering the rather large size of <i>mamAB</i> operon, which is 16.4 kb, a new method was employed to help its transfer into the <i>Azotobacter vinelandii</i>. The overview of <i>mamAB</i> construct cloning strategy is shown in Figure 1. | Considering the rather large size of <i>mamAB</i> operon, which is 16.4 kb, a new method was employed to help its transfer into the <i>Azotobacter vinelandii</i>. The overview of <i>mamAB</i> construct cloning strategy is shown in Figure 1. | ||
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Normal method of inserting the gene of interest by restriction digestion and ligation is not possible in here. Instead, the whole plasmid has to be synthesized by ourselves using PCR method. The overview of cloning strategy is summarized in Figure 2. Four fragments would be produced firstly: B0015 – the double terminator; backbone with kanamycin; J13002 (which consists of the constitutive promoter R0040 and the RBS); and <i>mamC</i>.<br> | Normal method of inserting the gene of interest by restriction digestion and ligation is not possible in here. Instead, the whole plasmid has to be synthesized by ourselves using PCR method. The overview of cloning strategy is summarized in Figure 2. Four fragments would be produced firstly: B0015 – the double terminator; backbone with kanamycin; J13002 (which consists of the constitutive promoter R0040 and the RBS); and <i>mamC</i>.<br> | ||
− | Through the over-lapping PCR of these four fragments, one linear fragment would be produced. And we have designed PstI sites at both the start and the end of the fragment. Consequently, by cutting the PstI site and ligate it, a circular plasmid will be produced. </p | + | Through the over-lapping PCR of these four fragments, one linear fragment would be produced. And we have designed PstI sites at both the start and the end of the fragment. Consequently, by cutting the PstI site and ligate it, a circular plasmid will be produced. </p><br> |
Revision as of 19:11, 18 September 2015