Difference between revisions of "Team:Bielefeld-CeBiTec/Project/HeavyMetals"

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<div id="mercury" style="display: none">
 
<div id="mercury" style="display: none">
 
<h3>Occurrence</h3>
 
<h3>Occurrence</h3>
<p> Mercury is found in water, typically as Methylmercury, which is build out of inorganic mercury by different marine bacteria <EM>Pseudomonas spp.</EM>) under aerobic conditions. Additional mercury(II)chloride with a high solubility, and mercury sulfide are found in water. The main natural source of Mercury exposure is trough volcanic activity (WHO 2005). Additional to the natural sources there are many kinds of emission caused by humans. For example mercury contamination can be caused by medical waste (damaged measurement instruments), fluorescent-lamps, chlor- alkali plants and thermal power plants (Verma et al.2013). The natural occurring concentration of mercury in groundwater and surface water are in most cases less than 0.5 µg/L but can rise to higher concentrations by local mineral deposit. In some countries, groundwater and shallow wells show an increased mercury concentration. Due to volcanic activity, the mercury concentration in water can rise frequently up to 5.5µg/L (Izu Oshima Island in Japan) (WHO 2005).</p>  
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<p> Mercury is found in water, typically as Methylmercury, which is build out of inorganic mercury by different marine bacteria <EM>Pseudomonas spp.</EM> under aerobic conditions. Additional mercury(II)chloride with a high solubility, and mercury sulfide are found in water. The main natural source of Mercury exposure is through volcanic activity (WHO 2005). Additional there are many kinds of emission caused by humans. For example mercury contamination can be caused by medical waste (damaged measurement instruments), fluorescent-lamps, chloralkali plants and thermal power plants (Verma <i>et al.</i>, 2013). The natural occurring concentration of mercury in groundwater and surface water are in general less than 0.5 µg/L but can rise to higher concentrations by local mineral deposit. Due to volcanic activity, the mercury concentration in water can rise frequently up to 5.5 µg/L (Izu Oshima Island in Japan) (WHO, 2005).</p>  
  
 
  <h3>Health effects</h3>
 
  <h3>Health effects</h3>
<p>In the environment, mercury is one of the most toxic elements (L.A. Rojas, 2011). Inorganic mercury is higher concentrated in water than organic mercury. The most toxic and dangerous compounds are organometallic mercury molecules like methylmercury and dimethylmercury. These organometallic compounds are better soluble in lipids. Because of this fact, it is easier to permeate the cellular membrane. Acute effects of a mercury intoxication can range from diseases of the liver, kidney, gastrointestinal tract, neuromuscular and neurological problems. Inorganic mercury accumulates in the kidneys and has a long biological half-time. In contrast to organic mercury, inorganic mercury is not able to cross the blood-brain barrier or blood-placenta barrier (Park <i>et al.</i>, 2012). A chronic intoxication of mercury results in kidney changes, changes in the central nervous system and other effects like cancer (Holmes <i>et al.</i>, 2009, WHO 2005). Studies have shown that mercury, in the form of mercury(II)chloride, binds with DNA and leads to strand breaks. Additional  studies show that mercury generates chromosomal aberrances (WHO 2005). In addition, a relation between an early exposure of mercury and late initial of Alzheimer and other neurodegenerative diseases are discussed (Park <i>et al.</i>, 2012). </p>
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<p>In the environment, mercury is one of the most toxic elements (L.A. Rojas, 2011). The most toxic compounds are organometallic mercury molecules like methylmercury and dimethylmercury, bceause they can easly permeate the cellular memrbane. These organometallic compounds are better soluble in lipids. Because of this fact, it is easier to permeate the cellular membrane. Acute effects of a mercury intoxication can range from diseases of the liver, kidney, gastrointestinal tract, neuromuscular and neurological problems. Inorganic mercury accumulates in the kidneys and has a long biological half-time, before it is not detectable anymore. In contrast to organic mercury, inorganic mercury is not able to cross the blood-brain barrier or blood-placenta barrier, so it accumulate in the organics (Park <i>et al.</i>, 2012). A chronic intoxication of mercury results in kidney changes, changes in the central nervous system and other effects like cancer (Holmes <i>et al.</i>, 2009, WHO 2005). Additional  studies show that mercury generates chromosomal aberrances (WHO, 2005). In addition, a relation between an early exposure of mercury and late initial of Alzheimer and other neurodegenerative diseases are discussed (Park <i>et al.</i>, 2012). </p>
  
 
  <h3>Detection</h3>
 
  <h3>Detection</h3>
     <p>In some laboratories mercury can be detected by atomic absorption spectrometry with a detection limit of 5µg/L and the Inductively Coupled Plasma Method with a detection level of 0.6µg/L (WHO 2005). These test systems are expensive, extensive and not suitable for fast simple testing. Additional to the named high-tech methods there are different chemical and biological test systems. One of these systems is the detection by ELISA with mercury specific Antibodies (Wylie <i>et al.</i>, 1991). </p>
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     <p>Mercury can be detected by atomic absorption spectrometry with a detection limit of 5 µg/L and the Inductively Coupled Plasma Method with a detection level of 0.6 µg/L (WHO 2005). Additional to the named high-tech methods there are different chemical and biological test systems. One of these systems is the detection by ELISA with mercury specific Antibodies (Wylie <i>et al.</i>, 1991). </p>
  
 
  <h3>Our mercury biosensor</h3>
 
  <h3>Our mercury biosensor</h3>
     <p>For our sensor, we use parts (<a href="http://parts.igem.org/Part: BBa_K346002" target="_blank"> BBa_K346002 </a> and <a href="http://parts.igem.org/Part: BBa_K346001" target="_blank"> BBa_K346001) </a>  of the mercury sensor constructed by iGEM team Peking 2010. These Parts consist of the Mer operon from <EM>Shigella flexneri</EM> R100 plasmid Tn21, a mercury dependent operon. The expression of the Mer operon is regulated by the activator MerR. The MeR transcription however is regulated by itself. Mercury can bind to the C-terminal located cysteines and generates a conformal change to activate the expression (N.L. Brown <i>et al.</i>, 2003). Our mercury Sensor contains MerR, which is under control of a constitutive promoter and specific promoter MerT. sfGFP protein is used as measuring output signal and it´s transcription is controlled by the 5` untranslated region, which enhances the following reporter protein sfGFP.  </p>  
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     <p>For our sensor, we use the Mer operator from <EM>Shigella flexneri</EM> R100 plasmid Tn21(<a href="http://parts.igem.org/Part: BBa_K346002" target="_blank"> BBa_K346002 </a> and its regulator MerR <a href="http://parts.igem.org/Part: BBa_K346001" target="_blank"> BBa_K346001) </a>  constructed by the iGEM team Peking 2010. The MerR functions as an activator and regulates his own transcription by binding to his C-terminal cysteine resulting in a changed conformation (N.L. Brown <i>et al.</i>, 2003). Our sensor system combines <i>merR</i> under the control of a constitutive promoter and the MerT promoter for the mercury depending expression of sfGFP.  </p>  
  
 
  <h3>References</h3>
 
  <h3>References</h3>

Revision as of 23:22, 18 September 2015

iGEM Bielefeld 2015


Heavy Metals

We detect several heavy metals with a single test strip.


Heavy metals have been part in a lot of iGEM projects over the last years, so why work with them again?


Heavy metals are still a major problem, therefore they have been part in a lot of iGEM projects. There are a lot of concepts to create heavy metal sensors. Some of them work extrodenary well. But most of these sensors never made it to real world applications. We want to change that. We aim to make a use of well characterized sensors as well as concepts and new ideas. All this sensor systems shell work on the same principle, so that we can use them to create a modular easy to handle paper based cell free test strip for detection of more substances, heavy metals in this case, in parallel.

"In my opinion the test stripe system has great potential in the field of monitoring contamination in industrial wastewater. It`s a fast and easy available system for qualitative control of several heavy metals.” (Dr.rer.nat. Andreas Bermpohl, manager of biotec GmbH)


survey result

Why heavy metals?
Heavy metals are part of earth’s crust and therefore natural occurring in our environment. (Heavy Metals - Lenntech) In low doses some of them as copper or nickel are even essential trace elements for animals and humans (Rashmi Verma and Pratima Dwivedi 2013). A major problem is their bioaccumulation which leads to toxicity and long term effects which include fatal diseases as cancer (Martin et al. 2009) Parkinson or Alzheimer’s disease (Gaggelli et al. 2006).

survey result

Which heavy metals?
The heavy metal sensors we chose for detection are specific to arsenic, copper, chromium, lead, mercury and nickel. Their concentrations in drinking water are regulated by the WHO, because of their immediate and longtime health effects.

survey result

Our biosensors
We decided to work with already existing, well-characterized sensors as well as with established but not well-characterized concepts of other teams and moreover create new sensor systems. Therefore, we established a basic construction plan for our sensor systems, which is based on a promoter with a specific operator region in front of a super folder GFP (sfGFP), that was used for detection trough fluorescence analysis. In addition we used fitting activators or repressors for our inducible promoters under the control of BBa_K608002 which consists of a constitutive promoter with a strong ribosomal binding site (RBS). We combined these into a device consisting of constitutive promoter and RBS reverse and the promoter and operator region in front of the sfGFP. So we have repressor or activator constitutively express but reverse, to minimize background transcription of the inducible system in front of our heavy metal promoter operator system. In addition, these devices are optimized for the usage in a cell free protein synthesis (CFPS). This is the basis for the development of cell free biosensors on a test strip, that can be used to detect several heavy metals at one in the open field.




Click on the test strip for more information about the heavy metals and how they can be detected:

teststrip