Difference between revisions of "Team:DTU-Denmark"
Line 1: | Line 1: | ||
− | + | <html> | |
− | <nav class="navbar navbar-default navbar-fixed-top" role="navigation"> | + | <head> |
− | + | <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1, user-scalable=no"> | |
− | + | <meta http-equiv="X-UA-Compatible" content="IE=edge"> | |
− | + | ||
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/loadphpcss?action=raw&ctype=text/css"> | |
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/bootstrapcss?action=raw&ctype=text/css"> | |
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/font-awesomecss?action=raw&ctype=text/css"> | |
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/wikicss?action=raw&ctype=text/css"> | |
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/timelinecss?action=raw&ctype=text/css"> | |
− | + | <link rel=stylesheet href="/Team:DTU-Denmark/menufixcss?action=raw&ctype=text/css"> | |
− | + | ||
− | + | <script type="text/javascript" src="/Team:DTU-Denmark/jqueryjs?action=raw&ctype=text/javascript"></script> | |
− | + | <script type="text/javascript" src="/Team:DTU-Denmark/bootstrapjs?action=raw&ctype=text/javascript"></script> | |
− | + | <script type="text/javascript" src="/Team:DTU-Denmark/jqueryeasingjs?action=raw&ctype=text/javascript"></script> | |
− | + | <script type="text/javascript" src="/Team:DTU-Denmark/wikijs?action=raw&ctype=text/javascript"></script> | |
− | + | ||
− | + | <!-- MathJax (LaTeX for the web) --> | |
− | + | <script src="https://2015.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_SVG"></script> | |
− | + | ||
− | + | </head> | |
− | + | <body data-spy="scroll" data-target="#scrollspy" data-offset="90"> | |
− | + | <div id="fb-root"></div> | |
− | + | <script>(function(d, s, id) { | |
− | + | var js, fjs = d.getElementsByTagName(s)[0]; | |
− | + | if (d.getElementById(id)) return; | |
− | + | js = d.createElement(s); js.id = id; | |
− | + | js.src = "//connect.facebook.net/da_DK/all.js#xfbml=1&version=v2.4"; | |
− | + | fjs.parentNode.insertBefore(js, fjs); | |
− | + | }(document, 'script', 'facebook-jssdk'));</script> | |
− | + | <nav class="navbar navbar-default navbar-fixed-top" role="navigation"> | |
− | + | <!-- Brand and toggle get grouped for better mobile display --> | |
− | + | <div class="container-fluid"> | |
− | + | <div class="navbar-header"> | |
− | + | <button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#nav-collapse"> | |
− | + | <span class="sr-only">Toggle navigation</span> | |
− | + | <i class="fa fa-bars"></i> | |
− | + | </button> | |
− | + | <a class="navbar-brand navimg" href="#"><img src="https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6dcd050>"></a> | |
− | + | </div> | |
− | + | <!-- Collect the nav links, forms, and other content for toggling --> | |
− | + | <div class="collapse navbar-collapse" id="nav-collapse"> | |
− | + | <ul class="nav navbar-nav"> | |
− | + | <li class="active"> | |
− | + | <a href="/Team:DTU-Denmark" | |
− | + | >Home | |
− | + | </a></li> | |
− | + | <li | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | > | |
− | + | <a href="" | |
− | + | class="dropdown-toggle" | |
− | + | data-toggle="dropdown" | |
− | + | role="button" | |
− | + | aria-expanded="false">Team and Attributions | |
− | + | <span class="caret"></span></a><ul class="dropdown-menu" role="menu"> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Team" | |
− | + | >Team | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Attributions" | |
− | + | >Attributions | |
− | + | </a></li></ul></li> | |
− | + | <li | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | > | |
− | + | <a href="" | |
− | + | class="dropdown-toggle" | |
− | + | data-toggle="dropdown" | |
− | + | role="button" | |
− | + | aria-expanded="false">Project | |
− | + | <span class="caret"></span></a><ul class="dropdown-menu" role="menu"> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Overview" | |
− | + | >Overview | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Background" | |
− | + | >Background | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/MAGE" | |
− | + | >MAGE subtilis | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Tyrocidine" | |
− | + | >Tyrocidine | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Chip" | |
− | + | >Lab-on-a-disc | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Inteins" | |
− | + | >Inteins | |
− | + | </a></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Project/Detection" | |
− | + | >Detection of NRP | |
− | + | </a></li></ul></li> | |
− | + | <li > | |
− | + | <a href="/Team:DTU-Denmark/Practices" | |
− | + | >Human Practices | |
− | + | </a></li> | |
− | + | <li | |
− | </nav> | + | |
+ | |||
+ | |||
+ | |||
+ | |||
+ | > | ||
+ | <a href="" | ||
+ | class="dropdown-toggle" | ||
+ | data-toggle="dropdown" | ||
+ | role="button" | ||
+ | aria-expanded="false">Parts Collection | ||
+ | <span class="caret"></span></a><ul class="dropdown-menu" role="menu"> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Parts" | ||
+ | >Parts | ||
+ | </a></li> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Description" | ||
+ | >Characterisation of xylR | ||
+ | </a></li></ul></li> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Journal" | ||
+ | >Journal | ||
+ | </a></li> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Software" | ||
+ | >Software | ||
+ | </a></li> | ||
+ | <li | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | > | ||
+ | <a href="" | ||
+ | class="dropdown-toggle" | ||
+ | data-toggle="dropdown" | ||
+ | role="button" | ||
+ | aria-expanded="false">Achievements | ||
+ | <span class="caret"></span></a><ul class="dropdown-menu" role="menu"> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Achievements" | ||
+ | >Key Achievements | ||
+ | </a></li> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Collaborations" | ||
+ | >Collaborations | ||
+ | </a></li> | ||
+ | <li > | ||
+ | <a href="/Team:DTU-Denmark/Judging_Form" | ||
+ | >Judging Form | ||
+ | </a></li></ul></li> | ||
+ | <li class="hidden-xs"> | ||
+ | <a href="http://facebook.com/dtubiobuilders" data-toggle="tooltip" data-placement="bottom" title="Follow us on Facebook"> | ||
+ | <i class="fa fa-facebook"></i><span class="visible-xs"> Follow us on Facebook</span> | ||
+ | </a> | ||
+ | </li> | ||
+ | <li class="visible-xs"><a href="http://facebook.com/dtubiobuilders"><i class="fa fa-facebook-square"></i> Follow us on Facebook</a></li> | ||
+ | <li class="hidden-xs"> | ||
+ | <a href="https://twitter.com/IGEM_DTU" data-toggle="tooltip" data-placement="bottom" title="Follow us on Twitter"> | ||
+ | <i class="fa fa-twitter"></i> | ||
+ | </a> | ||
+ | </li> | ||
+ | <li class="visible-xs"><a href="https://twitter.com/IGEM_DTU"><i class="fa fa-twitter-square"></i> Follow us on Twitter</a></li> | ||
+ | <li class="hidden-lg"> | ||
+ | <a href="https://igem.org" target="_blank" class="navimg"> | ||
+ | <img src="https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6dcd950>"> | ||
+ | </a> | ||
+ | </li> | ||
+ | </ul> | ||
+ | </div><!-- /.navbar-collapse --> | ||
+ | </div> | ||
+ | </nav> | ||
+ | |||
+ | |||
<nav class="navbar navbar-default extrabar hidden-xs hidden" data-spy="affix"> | <nav class="navbar navbar-default extrabar hidden-xs hidden" data-spy="affix"> | ||
<div class="container-fluid" id="scrollspy"> | <div class="container-fluid" id="scrollspy"> | ||
<ul class="nav navbar-nav"> | <ul class="nav navbar-nav"> | ||
− | <li><a class="page-scroll" href="# | + | <li><a class="page-scroll" href="#ProjectDescription">Project Description</a></li><li><a class="page-scroll" href="#SocialMedia">Social Media</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
</nav> | </nav> | ||
− | <div class="jumbotron hero" style="background-image: url(/ | + | |
+ | |||
+ | <div class="jumbotron hero" style="background-image: url(https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6dcd1d0>)"> | ||
<div class="igem-logo visible-lg"> | <div class="igem-logo visible-lg"> | ||
<a href="https://igem.org" target="_blank"> | <a href="https://igem.org" target="_blank"> | ||
− | <img src="/ | + | <img src="https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6dbfc50>"> |
</a> | </a> | ||
</div> | </div> | ||
Line 145: | Line 224: | ||
<hr/> | <hr/> | ||
+ | |||
+ | |||
<ul class="list-inline hidden-xs hidden-sm"> | <ul class="list-inline hidden-xs hidden-sm"> | ||
<li> | <li> | ||
− | <a id=" | + | <a id="ProjectDescription-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#ProjectDescription">Project Description</a> |
</li> | </li> | ||
<li> | <li> | ||
− | <a id=" | + | <a id="SocialMedia-submenu" class="btn btn-default btn-transparent btn-lg page-scroll" href="#SocialMedia">Social Media</a> |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
</li> | </li> | ||
Line 163: | Line 240: | ||
<li> | <li> | ||
− | <a id=" | + | <a id="ProjectDescription-submenu" class="page-scroll" href="#ProjectDescription">Project Description</a> |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
</li> | </li> | ||
<li> | <li> | ||
− | <a id=" | + | <a id="SocialMedia-submenu" class="page-scroll" href="#SocialMedia">Social Media</a> |
</li> | </li> | ||
</ul> | </ul> | ||
+ | |||
+ | |||
</div> | </div> | ||
</div> | </div> | ||
+ | |||
<div class="row"> | <div class="row"> | ||
<div class="col-md-12"> | <div class="col-md-12"> | ||
Scroll down for more<br> | Scroll down for more<br> | ||
− | <a href="# | + | <a href="#ProjectDescription" class="btn btn-circle btn-transparent page-scroll"> |
<i class="fa fa-angle-double-down"></i> | <i class="fa fa-angle-double-down"></i> | ||
</a> | </a> | ||
</div> | </div> | ||
</div> | </div> | ||
+ | |||
</div> | </div> | ||
</div> | </div> | ||
Line 190: | Line 267: | ||
− | <div id=" | + | <div id="ProjectDescription"> |
<div class="container"> | <div class="container"> | ||
<div class="row col-md-12"> | <div class="row col-md-12"> | ||
<h1> | <h1> | ||
− | + | Project Description | |
</h1> | </h1> | ||
− | <p> | + | <p style="text-align: center;"><span style="font-size:72px;"><span class="fa fa-headphones" style="color:rgb(0, 0, 0);"></span></span></p> |
+ | |||
+ | <p style="text-align: center;">Visit the Synthesizers' stand during Giant Jamboree! Get tuned in and listen to our podcast explaining our project!</p> | ||
+ | |||
+ | <p style="text-align: center;"><img alt="" src="/files/drawingpng.png" style="width: 625px; height: 378px;" /></p> | ||
+ | |||
+ | <p style="text-align: center;">Figure 1</p> | ||
+ | |||
+ | <p style="text-align: justify;">Non-ribosomal peptides have important anti-bacterial, anti-cancer, and immunosuppressive biological activities. They are synthesized by modular, high molecular weight enzymes that assemble more than 500 different amino acid substrates in an assembly line manner. For this reason, synthetic biologists have tried to engineer these proteins and to switch modules to create analogs and novel natural products, but with little success. Despite being modular, the interactions between modules have evolved to be highly specific, making synthetic Non-Ribosomal Peptide Synthases (NRPS) a challenge to engineer. Instead of switching modules we introduced a recombination system targeting oligo integration in Bacillus subtilis. We used the recombineering system to alter the active sites determining substrate specificity, thereby creating variants of antibiotics. Our focus was the tyrocidine antibiotic, which cannot be used intravenously due to its toxicity. Our goal is to create new analogs through multiplex automated genome engineering to reduce toxicity.</p> | ||
+ | |||
+ | <p> </p> | ||
Line 207: | Line 294: | ||
− | <div id=" | + | <div id="SocialMedia"> |
<div class="container"> | <div class="container"> | ||
<div class="row col-md-12"> | <div class="row col-md-12"> | ||
<h1> | <h1> | ||
− | + | Social Media | |
</h1> | </h1> | ||
− | < | + | <div class="col-md-6"> |
− | + | <p><a class="twitter-timeline" data-widget-id="631150747221139456" href="https://twitter.com/iGEM_DTU">Tweets by @iGEM_DTU</a> <script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script></p> | |
− | + | </div> | |
− | + | ||
− | </ | + | |
− | + | <div class="col-md-6"> | |
− | + | <div class="fb-page" data-adapt-container-width="true" data-height="600" data-hide-cover="false" data-href="https://www.facebook.com/dtubiobuilders" data-show-facepile="true" data-show-posts="true" data-small-header="false"> | |
− | + | <div class="fb-xfbml-parse-ignore"> | |
+ | <blockquote cite="https://www.facebook.com/dtubiobuilders"><a href="https://www.facebook.com/dtubiobuilders">DTU Biobuilders</a></blockquote> | ||
+ | </div> | ||
+ | </div> | ||
</div> | </div> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
− | + | </div> | |
+ | </div> | ||
− | < | + | |
− | <div class=" | + | <footer class="container"> |
− | <div class=" | + | <div class="row"> |
− | < | + | <div class="col-md-2 col-md-offset-2"> |
− | < | + | <a href="http://www.dtu.dk" target="_blank"> |
− | + | <img src="https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6e24b50>" height="130px"> | |
+ | </a> | ||
+ | </div> | ||
+ | <div class="col-md-4"> | ||
+ | <address> | ||
+ | <strong>Technical University of Denmark</strong><br> | ||
+ | Department of Systems Biology <br> | ||
+ | Søltofts Plads 221 <br> | ||
+ | 2800 Kgs. Lyngby<br> | ||
+ | Denmark<br> | ||
+ | <abbr title="Phone">P:</abbr> +45 45 25 25 25<br> | ||
+ | <abbr title="Mail">M:</abbr> <a href="mailto:dtu-igem-2015@googlegroups.com">dtu-igem-2015@googlegroups.com</a> | ||
+ | </address> | ||
+ | </div> | ||
+ | <div class="col-md-2"> | ||
+ | <a href="https://igem.org" style="float:left" target="_blank"> | ||
+ | <img src="https://2015.igem.org<app.models.UploadedFile object at 0x7fa2d6e24790>" height="90px"> | ||
+ | </a> | ||
+ | </div> | ||
+ | </div> | ||
+ | </footer> | ||
+ | <div class="sponsors"> | ||
+ | <div class="container"> | ||
+ | <div class="row"> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="http://www.lundbeckfonden.com/" target="_blank"> | ||
+ | <img src="/files/Lundbeckfonden.jpg"> | ||
+ | </a> | ||
</div> | </div> | ||
− | <div class=" | + | |
− | < | + | <div class="sponsorlogo"> |
− | + | <a href="http://www.ottomoensted.dk" target="_blank"> | |
+ | <img src="/files/Ottomoensted.png"> | ||
+ | </a> | ||
</div> | </div> | ||
− | + | ||
− | + | <div class="sponsorlogo"> | |
− | + | <a href="http://www.novonordiskfonden.dk/en" target="_blank"> | |
− | + | <img src="/files/NovoNordiskFonden_logo.png"> | |
− | + | </a> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
</div> | </div> | ||
− | <div class=" | + | |
− | < | + | <div class="sponsorlogo"> |
− | + | <a href="https://dk.vwr.com/" target="_blank"> | |
+ | <img src="/files/VWR.jpg"> | ||
+ | </a> | ||
</div> | </div> | ||
− | + | ||
− | + | <div class="sponsorlogo"> | |
− | + | <a href="http://frisenette.dk" target="_blank"> | |
− | + | <img src="/files/Frisenette.jpg"> | |
− | + | </a> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
</div> | </div> | ||
− | <div class=" | + | |
− | < | + | <div class="sponsorlogo"> |
− | + | <a href="http://www.in-vitro.dk/" target="_blank"> | |
+ | <img src="/files/In%20Vitro.jpg"> | ||
+ | </a> | ||
+ | </div> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="https://dk.fishersci.com/dk/" target="_blank"> | ||
+ | <img src="/files/Fisher%20Scientific.jpg"> | ||
+ | </a> | ||
+ | </div> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="http://us.akg.com/akg-homepage-us.html" target="_blank"> | ||
+ | <img src="/files/AKG.png"> | ||
+ | </a> | ||
+ | </div> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="http://www.macrogen.com/" target="_blank"> | ||
+ | <img src="/files/Marcogen.jpg"> | ||
+ | </a> | ||
+ | </div> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="http://www.snapgene.com/" target="_blank"> | ||
+ | <img src="/files/Snapgene.png"> | ||
+ | </a> | ||
+ | </div> | ||
+ | |||
+ | <div class="sponsorlogo"> | ||
+ | <a href="https://www.neb.com/" target="_blank"> | ||
+ | <img src="/files/NEB_logo.png"> | ||
+ | </a> | ||
</div> | </div> | ||
+ | |||
</div> | </div> | ||
− | </ | + | </div> |
− | + | </div> | |
− | </ | + | </body> |
− | + | </html> | |
− | </ | + | |
− | </ | + | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + |
Revision as of 13:50, 9 November 2015
Project Description
Visit the Synthesizers' stand during Giant Jamboree! Get tuned in and listen to our podcast explaining our project!
Figure 1
Non-ribosomal peptides have important anti-bacterial, anti-cancer, and immunosuppressive biological activities. They are synthesized by modular, high molecular weight enzymes that assemble more than 500 different amino acid substrates in an assembly line manner. For this reason, synthetic biologists have tried to engineer these proteins and to switch modules to create analogs and novel natural products, but with little success. Despite being modular, the interactions between modules have evolved to be highly specific, making synthetic Non-Ribosomal Peptide Synthases (NRPS) a challenge to engineer. Instead of switching modules we introduced a recombination system targeting oligo integration in Bacillus subtilis. We used the recombineering system to alter the active sites determining substrate specificity, thereby creating variants of antibiotics. Our focus was the tyrocidine antibiotic, which cannot be used intravenously due to its toxicity. Our goal is to create new analogs through multiplex automated genome engineering to reduce toxicity.