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Project

Mambalgin

CBDA Synthase

Mambalgin

Mambalgin is a potent analgesic polypeptide found in the venom of the Black Mamba snake (Dendroaspis polylepis). Mambalgin-1, the version found here, is a 3-finger toxin consisting of 57 amino acid residues forming 3 loops around a core in the shape of a hand. This protein has been found to inhibit acid-sensing ion channels (ASICs) in the central and peripheral nervous systems of mice through intraplanter and intrathecal injections. The inhibition of ASICs – important contributors to the pain pathway in both mice and humans – decreases sensitivity of nociceptive neurons to the perception of pain. The potency of mambalgin has been compared to the drug morphine. Unlike morphine, however, mambalgin has not shown an increase in tolerance over time (Diochot et al, 2012). Because of its potency and non-addictive properties, the potential of mambalgin as a pain reducer in humans is enticing. Synthetically producing this protein in large quantities would invalidate the need to harvest and extract directly from snakes – a dangerous and costly process.

Mambalgin E. Coli (BBa_K1800000)

Construct Design

For the design, we first codon optimized the Mambalgin-1 sequence (BBa_K1110003) for Escherichia coli using the IDT codon optimization tool. Restriction sites were then removed from the coding sequence that were iGEM incompatible. We added RFC 10 prefix and suffix and also included a start codon in the beginning of the sequence. Also included in the construct was a prokaryotic RBS (BBa_J61101), IPTG inducible promoter (BBa_R0011), and Myc and 6xHis epitopes. This fusion protein was designed specifically for easy expression in E. coli.

Experimental Design

Our experiment explores the possibility of synthetically producing the analgesic mambalgin-1 protein using E. coli and the yeast Pichia pastoris. Currently, the most effective form of extraction involves milking the venom from Dendroaspis polylepis (black mamba) – a dangerous and costly process. For E. coli, we inserted the mambalgin E. coli construct into the pSB1C3 vector to create a recombinant plasmid. This was then transformed into BL21 expression strain E. coli, which was IPTG induced in liquid cell culture.

Results

The 2015 GSU iGEM team was able to successfully express and characterize the mambalgin protein in E. coli. After inducing with IPTG overnight, the cell cultures were centrifuged and disrupted with a French press. Mambalgin was isolated using affinity chromatography, utilizing the 6x his tag in the construct. A SDS-PAGE was done, followed by a Ponceau S. stain to visualize the proteins. A band indicating a protein of ~9 kda – the size of the mambalgin for E. coli construct – was seen in the elute fraction.

Mambalgin Yeast (BBa_K1110003)

Construct Design

For the design, we took the coding sequence for mambalgin, removed the TAG stop codon, and added RFC 25 prefix and suffix in Snapgene software to visualize. RFC 25 was used because we were anticipating the use of this part in creating fusion proteins. Additional nucleotides were added before the biobrick prefix and after the biobrick suffix to enable more efficient restriction enzyme cutting at EcoRI and PstI sites. The mambalgin construct was then ordered from IDT and ligated into pSB1C3 backbone.
Using the pGAPzα expression system provided by ThermoFisher Scientific, the GSU team has been working to express the protein in Pichia Pastoris. The pGAPzα vector includes the constitutive glyceraldehyde-3-phosphate dehydrogenase (GAP) promoter, an alpha secretory signal peptide, and Myc and 6x His epitopes. The MCS, between the alpha secretion signal and epitopes, consists of restriction sites which will enable insertion of mambalgin. In-frame insertion into the MCS of pGAPza will be possible after using PCR to modify the construct - removing the RFC 25 prefix and suffix and adding restriction sites and nucleotides.

Experimental Design

Our experiment explores the possibility of synthetically producing the analgesic mambalgin-1 protein using E. coli and the yeast Pichia pastoris. Currently, the most effective form of extraction involves milking the venom from Dendroaspis polyepis (black mamba) – a dangerous and costly process. With Pichia pastoris, we chose to use the shuttle vector pGAPza. This plasmid includes an alpha-factor secretion signal and epitopes enabling secretion of the protein into the culture and easier characterization. To make in-frame insertion into pGAPza possible, the mambalgin for Pichia construct was modified using extension PCR. Using primers, the biobrick prefix and suffix were effectively replaced with restriction sites and nucleotides for correct in-frame insertion. The recombinant pGAPza plasmid was then transformed into Pichia pastoris and grown for expression.

Results

As of yet, we have not successfully been able to express mambalgin in Pichia pastoris.

CBDA Synthase

CBDA Synthase

Cannabidiolic-acid (CBDA) synthase is the enzyme that catalyzes the oxidative cyclization of cannabigerolic-acid(CBGA) into cannabidiolic acid or CBDA(Futoshi et.al, 2007). Cannabidiol (CBD) is a non-psychotropic constituent of the fiber-type cannabis plant which can be found in CBD oil, and it is obtained from non-enzymatic decarboxylation of CBDA (Takeda et.al, 2012). It is important to produce the CBGA to CBDA pathway synthetically independent of cannabis plants in order to insure the creation of CBD and not psychoactive tetrahydrocannabinol (THC). This is important because CBD oil can be used as an effective form of treatment for various disorders such as: seizures, cancer, anxiety, post-traumatic stress disorder, and Crohn’s disease.Since the CBDA synthase is 83.9% similar to THCA synthase in its 544-amino acid overlap, it should be possible to synthesize CBDA synthase in a similar fashion THCA synthase which has been synthesized multiple times (Futoshi et.al, 2007).

Construct Design

CBDA Synthase (BBa_K1800003)

CBDA Synthase is also known was cannabidiolic-acid synthase. It does not activate cannabinoid receptors (CB1 and CB2) and it has shown promise in treating many diseases or conditions such as: seizures, cancer, anxiety, pain, and many others. Since the CBDA synthase is 83.9% similar to THCA synthase in its 544-amino acid overlap, the synthesis of CBDA synthase should be similar to THCA synthase (Futoshi et.al, 2007).

Horseradish Peroxidase (BBa_K1800002)

In an effort to show proof of concept for the CBDA synthase portion of the project, the GSU-iGem team is using horseradish peroxidase transformed into agrobacterium then producing transgenic tobacco plants. This part was designed in accordance to RFC 10.

Experimental Design

CBDA Synthase

pORE vector, agrobacter, plants. We will test this concept with the HRP part we designed.

Results

CBDA Synthase

Though sequencing has not been confirmed yet, we probably ligated the CBDA Synthase part into pSB1C3. We will continue work on this next year.