Difference between revisions of "Team:Freiburg/Design"

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<div class="kommentar">
 
<div class="kommentar">
Julika arbeitet gerade daran! Finger weg! :) <br>
+
Julika arbeitet dran! Finger weg! :)
Kann korrigiert werden (LK)
+
<br><br> <b> Kommentare von ps</b>
+
Quelle für niedrige sensitivität beim lateral flow test <br>
+
"Furthermore, diagnostic based on microarray  immunoassays is scarcely used for rare disease cases after conventional <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">ELISA</a> tests have not proven a positive result." Vasteh ich nich...<br>
+
"As DNA is stable within a large range of temperatures, pH values and other environmental conditions, it proves to be the ideal molecule for storing protein information. This allows us to offer different combinations of antigens, providing the optimal detection system for most needs and producing them on demand." Quelle <br>
+
 
+
</div>
+
<div class="todo_box">
+
-graphs still need work (LK)<br>
+
- Insert-Link Button at page end (SB)
+
 
</div>
 
</div>
  
 +
<div class="content_box">
 +
<h1>Today's Applications of Immunodiagnostics</h1>
 +
<p>
 +
In the world's poorest countries  more than half of the deaths are due to infectious diseases – in the wealthiest countries it is less than 5%
 +
<sup><a class="fn_top" href="#fn__1" id="fnt__1" name="fnt__1">1)</a>
 +
</sup>.
 +
</p>
  
<div class="header_box">
+
<div class="horizontal_menu">
 +
<ul>
 +
    <li><a href="#Introduction">Introduction</a></li>
 +
    <li><a href="#Current_Methods">Current Methods<a></li>
 +
    <li><a href="#Limitations">Limitations</a></li>
 +
    <li><a href="#DiaCHIP_Contribution">DiaCHIP Contribution</a></li>
 +
    <li><a href="#Outlook">Outlook</a></li>
 +
</ul>
 +
</div>
 
</div>
 
</div>
 +
  
 
<div class="content_box">  
 
<div class="content_box">  
 +
<!-- EDIT1 SECTION "Today's Applications of Immunodiagnostics" [1-206] -->
 +
<span id="Introduction" class="anchor"></span>
 +
<h2 class="sectionedit2">The Field of Diagnostics</h2>
 +
 +
<p>
 +
Medical diagnostics comprise the whole process of tracing the source leading to a patient's symptoms. Usually, it is understood as the identification of a pathogen or a malfunction responsible for the illness. <br>
 +
To achieve an efficient disease treatment, clinical diagnostics are mostly divided into the following steps:
 +
</p>
 +
<p>
 +
<ul>
 +
<li>A clinician, interviewing the patient and considering his medical history, risk factors and current problems, proposes a certain differential diagnosis, thus pre-limiting the spectrum of possible diseases.<br><br>
 +
</li>
 +
<li>This is usually followed by the performance of diagnostic tests (normally in a central laboratory) to confirm the differential diagnosis and to clearly identify or at least further limit possible causes of the symptoms.<br><br>
 +
</li>
 +
<li >Finally, this leads to a treatment consisting of medication, surgery, hospitalization or discharge.<br>
 +
</li>
 +
</ul>
 +
</p>
 +
<div class="image_box right">
 +
<br>
 +
<img src="https://static.igem.org/mediawiki/2015/3/3a/Freiburg_Patient.jpeg" width="350px">
 +
</div>
 +
<p>
 +
Interest in the so called Point-Of-Care (POC) diagnostics increased dramatically
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a>
 +
</sup>
 +
<sup><a class="fn_top" href="#fn__3" id="fnt__3" name="fnt__3">3)</a>
 +
</sup>
 +
in the last decades. POC diagnostics (or bedside diagnostics) are diagnostic tests that can be performed directly at a patient's side or even bedside. The output of such a test is immediately available – thus circumventing the usually necessary sending of samples to external labs.
 +
The term POC encompasses many possible end-use settings outside of a centralized testing facility like emergency settings, regional health clinics, medical practices as well as home or mobile use. <br>
 +
These tests consist of common devices that are present in everyday life, such as AB0-testing, blood glucose testing, blood gas and electrolytes analysis, pregnancy testing and cholesterol screening. <br>
 +
For the near future an increase in the amount of products for POC diagnostic is predicted
 +
<sup><a class="fn_top" href="#fn__4" id="fnt__4" name="fnt__4">4)</a>
 +
</sup>,
 +
thereby confirming the need for such applications.
 +
In the face of aging populations, spreading of infectious diseases especially in the developing world, biohazard threats and increasing numbers of autoimmune diseases and allergies in the developed world
 +
<sup><a class="fn_top" href="#fn__5" id="fnt__5" name="fnt__5">5)</a>
 +
</sup>
 +
<sup><a class="fn_top" href="#fn__6" id="fnt__6" name="fnt__6">6)</a>
 +
</sup>,
 +
POC tests become inevitable.<br>
 +
But these devices also are convenient methods for improving everyday life: a drop of blood could easily reveal the physical cause of feelings of discomfort, such as a the lack of certain metabolic substances. A simple diet suggestion may thus increase life quality and health in one go.
 +
</p>
  
<h1>Diagnostics Today</h1>
+
</div>
<h2>Limitations of Currently Available (Immunodiagnostic) Tests</h2>
+
<p>
+
Current diagnostic methods provide reliable information on a broad range of diseases, but there are still applications where current methods suffer from various restrictions.
+
</p>
+
<p>
+
To be used in low-resource settings, <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Future_Directions" title="Outlook">future diagnostic</a> methods should obtain the following features:
+
</p>
+
  
<ul>
 
  <li> <strong>Speed</strong> - time is a crucial point in diagnostics, to prevent e.g. the spreading of a highly contagious disease. For a patient fast detection can mean the difference between live and death.
 
  </li>
 
</br>
 
  <li> <strong>Simplicity</strong> - the necessary handling should be as easy as possible.
 
  </li>
 
</br>
 
  <li> <strong>Low-cost</strong> - <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">point of care</a> diagnostics need to be affordable especially when considering usage in developing countries.
 
  </li>
 
</br>
 
  <li > <strong>Unambiguity</strong> - the output of <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">point of care</a> tests needs the clarity and simplicity of a yes/no answer.
 
  </li>
 
</br>
 
  <li> <strong>Storage under sub-optimal conditions</strong> - As optimal storage conditions cannot be always guaranteed, the device and its components have to be working reliably under harsh conditions, with temperatures ranging from 10°C to 40°C (50°F to 104°F).
 
  </li>
 
</br>
 
  <li> <strong>Multiplexed testing</strong> - Covering a broad spectrum of possible diseases (ideally integrated into one test run) allows for a differential diagnosis even in the case of different diseases with similar symptoms.
 
  </li>
 
</br>
 
</ul>
 
  
 
+
<div class="content_box">
</br>
+
<!-- EDIT2 SECTION "What are diagnostics" [207-3044] -->
 
+
<span id="Current_Methods" class="anchor"></span>
<div class="image_box left">
+
<h2>Current Diagnostic Methods</h2>
<img src="https://static.igem.org/mediawiki/2015/b/b7/Freiburg_Diagnostics_ELISA.jpg" width="150px">
+
<p>
</div>
+
The four most common centralized laboratory techniques are blood chemistry, immunoassays, nucleic-acid amplification tests and flow cytometry
<p>
+
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a>
The commonly used <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">ELISA</a> while providing reliable results, only provides a limited capacity for multiplexing (as only one interaction per well may be detected). It takes several hours and large amounts of sample as well as antibodies (0.05-1.2&nbsp;µg antibody per well <sup><a class="fn_top" href="#fnt__31" id="fn__23" name="fn__31">1)</a></sup>).  
+
</sup>.
</p>
+
As the
 +
<a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/System" title="DiaCHIP">DiaCHIP
 +
</a>  
 +
is an immunodiagnostic method we will focus on this part of diagnostics and compare it to commonly applied methods in today's clinics and labs. Immunodiagnostics are based on antigen-antibody interactions, which might be present within the body fluids of a patient. By detecting and identifying key proteins within a patient's sample like blood or urine, these tests enable to distinguish between major classes of diseases like infectious diseases, metabolic diseases, cardiovascular diseases or cancer
 +
<sup><a class="fn_top" href="#fn__3" id="fnt__3" name="fnt__3">3)</a>
 +
</sup>.
 +
Immunodiagnostics are realized by immunoassays, which summarize a wide range of formats, allowing quantification and monitoring of small molecules, large proteins and even whole pathogens
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a>
 +
</sup>.
 +
Three prominent examples of immunoassays are lateral flow tests, ELISAs and miniaturized immunoassays (microarrays).
 +
<br>
 +
</p>
  
 
<div class="image_box right">
 
<div class="image_box right">
<img src="https://static.igem.org/mediawiki/2015/6/62/Freiburg_Schwangerschaftstest.jpeg" width="150px">
+
<img src="https://static.igem.org/mediawiki/2015/b/b7/Freiburg_Diagnostics_ELISA.jpg" width="120px">
 
</div>
 
</div>
<br>
 
<br>
 
<br>
 
<p>
 
Lateral flow tests are much faster but can only detect few molecules of interest.
 
Moreover, they are known to perform poorly in terms of sensitivity. Miniaturized immunoassays (microarrays) combined with microfluidic bioanalysis have been shown to have a great potential regarding future diagnostics <sup><a class="fn_top" href="#fn__2" id="fnt__25" name="fnt__2">2)</a></sup>. <br>
 
Yet, immunoassays based on peptides suffer from poor peptide purity and thus low specificity. As they consist of proteins, instability and storage are issues of bigger concern. Furthermore, diagnostic based on microarray  immunoassays is scarcely used for rare disease cases after conventional <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">ELISA</a> tests have not proven a positive result.
 
</br>
 
  
<div class="image_box left">
+
<p>
<img src="https://static.igem.org/mediawiki/2015/7/7a/Freiburg_sanduhr.jpg" width="150px">
+
<strong>ELISA - sensitive but time consuming, no multiplexing</strong>:
        </div>
+
</br>
<p>
+
<br>
In contrast, a fast diagnosis is essential for an immediate onset of appropriate treatment, a critical factor for the patients' health and life.
+
The commonly used ELISA (enzyme linked immunosorbent assay) only provides limited capacity for multiplexing as only one specific disease can pe detected per well. It takes several hours and large amounts of sample material as well as antibodies (0.05-1.2&nbsp;µg antibody per well
Moreover, improved diagnostics are not only required regarding the health of a patient: 70% of healthcare expenses <sup><a class="fn_top" href="#fn__18" id="fnt__26" name="fnt__18">3)</a></sup> are linked to diagnostic tests. Therefore, improvements in diagnostic technologies have great potential to drastically reduce overall healthcare costs while increasing health as such.
+
<sup><a class="fn_top" href="#fnt__31" id="fn__23" name="fn__31">1)</a>
</br>
+
</sup>
</br>
+
) to test for all the possible diseases fitting the patient's symptoms.
Diagnostic tests are usually developed for use in air-conditioned laboratories with refrigerated storage of chemicals, a constant supply of calibrators and reagents, highly trained personal and rapid transportation of samples. This setting is not available for most developing countries <sup><a class="fn_top" href="#fn__20" id="fnt__27" name="fnt__20">4)</a></sup>.
+
Thus, most of the substantial progress achieved in the public health and <a href="https://2015.igem.org/Team:Freiburg/Glossary" target="blank">point of care</a> sector has only been advantageous to the more developed part of the world.
+
</p>
+
  
<div class="image_box right">
+
<div class="accordion">
<img src="https://static.igem.org/mediawiki/2015/4/45/Freiburg_WHO_statistics_temp.png" width="250px">
+
  <div class="accordion-section">
</div>
+
    <a class="accordion-section-title" href="#accordion-1">More information</a>
 +
    <div id="accordion-1" class="accordion-section-content" style="display:none; padding:15px;">
 +
      <p>
 +
</br>
 +
The ELISA is seen as the state-of-the-art technique for highly sensitive serological diagnosis. ELISA is based on the interaction of a pathogenic antigen and its corresponding antibodies.</br>
 +
The typically used “sandwich” ELISA requires an antigen with at least two binding sites and a pair of antibodies binding these sites. At first, a capture antibody is immobilized on the surface of a microplate well. <br>
 +
After incubation with the sample and the binding of the respective antigen, the seconardy antibody is added. Either this secondary antibody or a third one, binding the second, yields a signal enhancement, mostyl by enzyme coupled reactions, if the antigen was present in the sample. This procedure increases the sensitivity about 10,000 fold down to pg/ml scales
 +
<sup><a class="fn_top" href="#fn__7" id="fnt__7" name="fnt__7">7)</a>
 +
</sup>.
 +
ELISA is a very sensitive and specific test, most commonly used in serological diagnostics, e.g. for <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Diseases#Zoster">Varicella Zoster</a>
 +
<sup><a class="fn_top" href="#fn__8" id="fnt__8" name="fnt__8">8)</a>
 +
</sup>,
 +
Hepatitis B
 +
<sup><a class="fn_top" href="#fn__9" id="fnt__9" name="fnt__9">9)</a>
 +
</sup>,
 +
Toxoplasmosis
 +
<sup><a class="fn_top" href="#fn__10" id="fnt__10" name="fnt__10">10)</a>
 +
</sup>
 +
or Ebola
 +
<sup><a class="fn_top" href="#fn__11" id="fnt__11" name="fnt__11">11)</a>
 +
</sup>.
 +
Depending on the assay protocol used, a whole ELISA can be carried out within some hours to one day.
 +
<br>
 +
</p>
 +
    </div><!-- end accordion-section-content -->
 +
  </div><!-- end accordion-section -->
 +
</div> <!-- end accordion -->
  
 +
</p>
  
<p>
 
According to the WHO <sup><a class="fn_top" href="#fn__6" id="fnt__29" name="fnt__6">5)</a></sup> 2.5 out of 6 billion people lack basic sanitation, 2 billions do not have access to electricity and more than 1 billion lack basic healthcare services and clean drinking water.
 
Moreover, 50% of all deaths in the most impoverished developing countries are a result of infectious diseases, whereas in the wealthiest developed countries this accounts for less than 5% of deaths.
 
</br>
 
</br>
 
Therefore, transforming existing technologies into mobile applications is a leap forward to improve access to diagnostic tools all over the world. These applications should be robust yet sensitive enough for the use outside of specified laboratories. Outbreaks and spreading of potential epidemic diseases or sexually transmitted infections can be controlled by rapid diagnosis and appropriate treatment <sup><a class="fn_top" href="#fn__6" id="fnt__29" name="fnt__6">5)</a></sup>.
 
</p>
 
  
<div class="image_box left">
+
<div class="image_box left">
  <div class="thumb2 tcenter" style="width:310px"><div class="thumbinner"><a class="lightbox_trigger" href="https://static.igem.org/mediawiki/2015/0/09/Freiburg_statistic_number_of_STI_cases_2008.png" title="Freiburg_statistic_number_of_STI_cases_2008.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/0/09/Freiburg_statistic_number_of_STI_cases_2008.png" width="300"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/0/09/Freiburg_statistic_number_of_STI_cases_2008.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div></div></div></div>
+
<img src="https://static.igem.org/mediawiki/2015/6/62/Freiburg_Schwangerschaftstest.jpeg" width="120px">
</div>
+
</div>
 +
 +
<p>
 +
<strong>Lateral flow test - simple and rapid, no multiplexing, limited sensitivity</strong>  
 +
<br>
 +
<br>
 +
Lateral flow tests are much faster to perform but can only detect one molecule of interest at once. Moreover, they are known to perform rather poorly in terms of sensitivity (!!!!!!!!!!!!LINK!!!!!!!!!!!!!!).
  
 +
<div class="accordion">
 +
  <div class="accordion-section">
 +
    <a class="accordion-section-title" href="#accordion-2">More information</a>
 +
    <div id="accordion-2" class="accordion-section-content" style="display:none; padding:15px;">
 +
      <p>
 +
<br>
 +
The lateral flow test is commonly known as strip test. It is rather complicated in its setup, but extremely easy to use as only a drop of liquid has to be added to get a result that is easy to interpret within minutes. The test confirms its validity and the presence or absence of the target molecule through the appeareance of colored stripes. Prominent examples are pregnancy tests, but also drug-abuse tests,  HIV diagnostics in developing countries
 +
<sup><a class="fn_top" href="#fn__4" id="fnt__4" name="fnt__4">4)</a>
 +
</sup>
 +
or blood-glucose tests. Stripe tests can be seen as the gold standard for Point-of-Care devices - easy to store, use and easy to read out.
 +
</br>
 +
</p>
 +
    </div><!-- end accordion-section-content -->
 +
  </div><!-- end accordion-section -->
 +
</div> <!-- end accordion -->
  
<p>
+
</p>
A need for such technologies is urgent: 500 million people between the age of 15 to 49 are infected with curable sexually transmitted infections like chlamydia, gonorrhea, <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Diseases#Syphilis" title="syphilis">syphilis</a> or trichomoniasis each year <sup><a class="fn_top" href="#fn__21" id="fnt__30" name="fnt__21">6)</a></sup>! However, the infrastructure currently available for diagnosis of infectious diseases often proves to be too slow and expensive to be practicable for third world countries. This becomes obvious when considering the identification of pathogens of an infectious diarrhea, which takes 2-4 days – even in the best developed laboratories of the world! <sup><a class="fn_top" href="#fn__22" id="fnt__31" name="fnt__22">7)</a></sup>.
+
<br>
+
<p>
 +
<strong>Miniaturized Immunoassay (Microarray) and Lab-on-a-Chip (LOC)</strong>
 +
<br>
 +
<br>
 +
Miniaturized immunoassays (microarrays) combined with microfluidic bioanalysis have been shown to hold great potential regarding future diagnostics
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__25" name="fnt__2">2)</a>
 +
</sup>.  
 +
In comparison to ELISAs and lateral flow tests for, they already hold the possibility for multiplexing.
 +
 +
 +
<div class="accordion">
 +
  <div class="accordion-section">
 +
    <a class="accordion-section-title" href="#accordion-3">More information</a>
 +
    <div id="accordion-3" class="accordion-section-content" style="display:none; padding:15px;">
 +
      <p>
 +
Lab-on-a-Chip (LOC) refers to the idea that many processes in the lab can be improved and automated by miniaturizing them on or into a chip. A microarry is a multiplexed or multiparallel LOC-device
 +
<sup><a class="fn_top" href="#fn__12" id="fnt__12" name="fnt__12">12)</a>
 +
</sup>.
 +
<br>
 +
Many scientists consider LOC-based methods to be the most likely technological driver to fundamentally transform the Point-Of-Care diagnostic industry
 +
<sup><a class="fn_top" href="#fn__4" id="fnt__4" name="fnt__4">4)</a>
 +
</sup>
 +
<sup><a class="fn_top" href="#fn__13" id="fnt__13" name="fnt__13">13)</a>
 +
</sup>.
 +
Nowadays, miniaturized immunoassays are one of the most important analysis platforms for proteins
 +
<sup><a class="fn_top" href="#fn__3" id="fnt__3" name="fnt__3">3)</a>
 +
</sup>.
 +
<br>
 +
The development of Lab-on-a-Chip systems is closely linked to the emergence of microfluidics. Microfluidic techniques use small, compact, low-power and mass-producible chips, which are designed for small sample sizes and rapid but at the same time sensitive analysis
 +
<sup><a class="fn_top" href="#fn__14" id="fnt__14" name="fnt__14">14)</a>
 +
</sup>.
 +
Various LOC diagnostic modules have been integrated within microfluidic chips, providing devices with immense multiplexing probabilities and high functionality
 +
<sup><a class="fn_top" href="#fn__4" id="fnt__4" name="fnt__4">4)</a>
 +
</sup>.
 +
</br>
 +
However, up to date complex microfluidics and LOC systems have not yet fulfilled people’s expectations to revolutionize the healthcare industry, even though more simplistic lateral flow assays are a huge succes.
 +
</br>
 +
For diagnostic systems, a broad and diverse field of methods and techniques is available. As this is far more than we are able to describe here, we want to refer to the overview article of Roth <i>et al.</i>
 +
<sup><a class="fn_top" href="#fn__15" id="fnt__15" name="fnt__15">15)</a>
 +
</sup>.
 +
</p>
 +
    </div><!-- end accordion-section-content -->
 +
  </div><!-- end accordion-section -->
 +
</div> <!-- end accordion -->
 +
</p>
 +
 +
<p>
 +
<strong>Laser-microbeads</strong>
 +
!!!!!!!!!!MISSING!!!!!!!!!!
 +
<div class="kommentar">Zum Teil wurde darüber bei Autoimmunkrankheiten geschrieben, nochmal umformulieren</div>
 +
</p>
 +
 +
<br>
 +
<br>
 +
<p>
 +
Even though current diagnostic methods provide reliable information on a broad range of diseases, they still encounter various restrictions.
 +
As already mentioned, time and the possibility of multiplexing are some crucial issues regarding future diagnostics.
 +
For instance, ELISAs do not provide a possibility for multiplexing and performing the test lasts at least some hours.
 +
<br>
 +
Especially for the methods mentioned at last, a lot of expensive equipment is needed for analyzing the results.
 +
This leads either to conflicts regarding involved costs or due to the size of the devices that are mostly far from portable.
 +
This restricts the use to developed countries and special facilities.
 +
<br>
 +
Besides those complications, all the methods described above rely on a solid material with immobilized proteins on it.
 +
Anyhow, proteins are difficult to handle as they are rather unstable.
 +
The storage of proteins therefore requires particular conditions that are not easy to provide in some parts of the world.
 +
</p>
 +
</div>
  
  
<!-- EDIT4 SECTION "What are the limitations of currently available (immunodiagnostic) tests" [11353-16351] -->
+
<div class="content_box">
<h2 class="sectionedit5">How can the DiaCHIP contribute to the solution to these problems?</h2>
+
<!-- EDIT3 SECTION "What are current diagnostic methods" [3045-11352] -->
<p>
+
<span id="Limitations" class="anchor"></span>
<a href="https://2015.igem.org/Team:Freiburg/Project/System">Our approach</a> basically combines <strong>three promising techniques</strong> in  one<strong> DiaCHIP device</strong>, offering great potential to improve future diagnostics.
+
<h2>Limitations of Currently Available (Immunodiagnostic) Tests</h2>
 +
<p>
 +
 +
</br>
 +
<br>
 +
 +
</br>
 +
 
</p>
 
</p>
  
<a style="float:left; clear:both;" class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Results/Diagnostics" title="multiplexing"><strong>Miniaturized immunoassays combined with microfluidics</strong></a>:
+
<div class="image_box left">
<p> Miniaturized immunoassays enable immense multiplexing. By immobilizing hundreds of different antigens, it is possible to screen a patient’s sample for hundreds of potential antibodies and related diseases.
+
<img src="https://static.igem.org/mediawiki/2015/7/7a/Freiburg_sanduhr.jpg" width="120px">
With small volumes of reagents and samples, a rapid delivery of results with short turnover times and enormous multiplexing is possible with microfluidic based lab-on-a-chip systems.
+
    </div>
</p>
+
 +
<p>
  
<strong><a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Cellfree_Expression" title="cell_free">Microarray Copying (generating proteins from DNA templates on demand)</a></strong>:
+
As a lot of diseases can nowadays be treated quite well, fast diagnosis is essential for an immediate onset of appropriate treatment.
<p>
+
It depicts a critical factor for the patient's health and life and significantly determines the wellbeing.
Storing and handling problems of conventional peptide based microarrays are circumvented by directly producing our protein array from a DNA array via cell-free expression. As DNA is stable within a large range of temperatures, pH values and other environmental conditions, it proves to be the ideal molecule for storing protein information. This allows us to offer different combinations of antigens, providing the optimal detection system for most needs and producing them on demand circumventing protein purification and storage.
+
Moreover, improved diagnostics are not only required regarding the health of a patient: 70% of healthcare expenses are linked to diagnostic tests
</p>
+
<sup><a class="fn_top" href="#fn__14" id="fnt__14" name="fnt__14">14)</a>
 +
</sup>.
 +
Therefore, improvements in diagnostic technologies have the potential to drastically reduce overall healthcare costs while at the same time increasing health as such.
 +
</br>
 +
</br>
 +
Diagnostic tests are usually developed for use in air-conditioned laboratories with refrigerated storage of chemicals, a constant supply of calibrators and reagents, highly trained personal and rapid transportation of samples.  
 +
This setting is not available for most developing countries
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a>
 +
</sup>.
 +
Thus, most of the substantial progress achieved in the public health and Point-of-Care sector has only been advantageous to the more developed part of the world.
 +
</br>
 +
</p>
 +
 +
<div class="image_box left">
 +
<img src="https://static.igem.org/mediawiki/2015/2/2a/Freiburg_3rdworldneunochmal.png" width="350px">
 +
</div>
  
<strong><a style="float:left; clear:both;" class="wikilink2" href="https://2015.igem.org/Team:Freiburg/Project/iRIf" title="iRif">iRIf detection method</a></strong>:
+
<p>
<p> This emerging detection method allows a fast, sensitive and label free detection of binding processes. Binding of the serum-originated antibody can be detected directly, omitting the incubation of the sample with a second detection antibody, thus making the detecting cheaper and faster. If needed, the signal can be further amplified with a secondary antibody, if specificity of binding remains unclear or the signal needs to be enhanced. This secondary antibody does also not require any fluorescent or enzymatic labeling. The use of specific secondary antibodies allows for differentiation between an acute disease and an old immunization.
+
According to the WHO 2.5 out of 6 billion people lack basic sanitation, 2 billions do not have access to electricity and more than 1 billion lack basic healthcare services and clean drinking water
</p>
+
<sup><a class="fn_top" href="#fn__18" id="fnt__18" name="fnt__18">18)</a>
 +
</sup>.
 +
Moreover, 50% of all deaths in the most impoverished developing countries are a result of infectious diseases, whereas in the wealthiest developed countries this concerns less than 5%
 +
<sup><a class="fn_top" href="#fn__1" id="fnt__1" name="fnt__1">1)</a></sup>.
 +
</br>
 +
</br>
 +
Therefore, transforming existing technologies into protable applications is a leap forward to improve general health all over the world. These applications should be robust and sensitive enough for the use outside of equipped laboratories. Outbreaks and spreading of potential epidemic diseases or sexually transmitted infections could be controlled by a rapid diagnosis and immediate onset of appropriate treatment
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a></sup>.
 +
</p>
  
<p>
+
<div class="image_box left">
If you want to read more about today's diagnostic methods, <a href="https://2015.igem.org/Team:Freiburg/Project/Diagnostics_details">click here</a>.  
+
  <div class="thumb2 tcenter" style="width:450px">
</p>
+
  <div class="thumbinner"><a class="lightbox_trigger" href="https://static.igem.org/mediawiki/2015/d/db/Freiburg_STDs.png" title="https://static.igem.org/mediawiki/2015/d/db/Freiburg_STDs.png">
 +
  <img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/d/db/Freiburg_STDs.png" width="300"/></a>
 +
  <div class="thumbcaption">
 +
  <div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/d/db/Freiburg_STDs.png" title="vergrößern">
 +
  <img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a>
 +
  </div>
 +
  </div>
 +
  </div>
 +
  </div>
 +
</div>
  
<p>
+
<p>
We also considered and address potential ethical concerns of the DiaCHIP in a dedicated section, read more about it <a href="https://2015.igem.org/Team:Freiburg/Human_Practice/Ethics#globalWrapper"> here</a>.  
+
A need for such technologies is urgent: 500 million people between the age of 15 and 49 are infected with curable sexually transmitted infections like chlamydia, gonorrhea, <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Diseases#Syphilis" title="syphilis">syphilis</a> or trichomoniasis each year
</p>
+
<sup><a class="fn_top" href="#fn__19" id="fnt__19" name="fnt__19">19)</a>
 +
</sup>!
 +
However, the infrastructure currently available for the diagnosis of infectious diseases often proves to be too slow and expensive to be practicable for third world countries.  
 +
This can be illustrated with the identification of pathogens of an infectious diarrhea taking 2-4 days – even in the best developed laboratories of the world
 +
<sup><a class="fn_top" href="#fn__20" id="fnt__20" name="fnt__20">20)</a>
 +
</sup>.
 +
</p>
 +
 +
<p>
 +
According to the problems and needs discussed, devices for future diagnostics should meet the following requirements:
  
 +
<ul>
 +
  <li> <strong>Speed</strong> - a fast diagnosis reduces time until the beginning of treatment, preventing the spread of epidemic diseases and reducing the severity of a disease
 +
  </li>
 +
</br>
 +
<li> <strong>Simplicity</strong> - the handling necessary to perform the test should be as easy as possible
 +
  </li>
 +
</br>
 +
  <li> <strong>Low-cost</strong> - Point-of-Care diagnostics need to be affordable in developing countries
 +
  </li>
 +
</br>
 +
  <li > <strong>Unambiguity</strong> - the output of Point-of-Care tests requires the clarity of a yes/no answer
 +
  </li>
 +
</br>
 +
  <li> <strong>Storage under sub-optimal conditions</strong> - since defined conditions may not be available, the device has to be stable under extreme conditions concerning temperature, pH or humidity for example
 +
  </li>
 +
</br>
 +
  <li> <strong>Multiplexing</strong> - covering a broad spectrum of possible diseases in only one device allows for a differential diagnosis with the need for only one sample of the patient
 +
  </li>
 +
</br>
 +
</ul>
 +
</p>
 +
</div>
  
  
  <!---------------------------- BEGIN Footnotes ---------------------------------->
+
<div class="content_box">
 +
<span id="DiaCHIP_Contribution" class="anchor"></span>
 +
<h2 class="sectionedit5">How Can Our DiaCHIP Contribute to Solving These Problems?</h2>
 +
<p>
 +
Our approach, the <a href="https://2015.igem.org/Team:Freiburg/Project/System">DiaCHIP</a>, basically combines <strong>three promising techniques</strong> in <strong>one device</strong>, offering great potential to improve future diagnostics.
 +
</p>
  
<div class="footnotes">
+
<a style="float:left; clear:both;" class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Results/Diagnostics" title="multiplexing">Miniaturized Immunoassays Combined with Microfluidics</a>  
<h2>References</h2>
+
<p>  
 +
Miniaturized immunoassays enable immense multiplexing. By immobilizing hundreds of different antigens it is possible to screen a patient’s sample for the existence of many potential antibodies. This allows customized combinations of antigens, thereby providing the optimal detection system for the respective application.<br>
 +
For the microfluidic device only small volumes of reagents and samples are necessary making it cost-efficient additionally to saving time.
 +
</p>
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__31" id="fn__23" name="fn__31">1)</a></sup>  
+
<a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Cellfree_Expression" title="cell_free">Microarray Copying (Generating Protein Arrays From DNA Array Templates)</a>  
<a target="_Blank" href="http://tools.thermofisher.com/content/sfs/brochures/TR0065-ELISA-guide.pdf">
+
<p>
Thermo Fischer Scientific Inc., 2010. ELISA technical guide and protocols</a>
+
Storage and handling problems of conventional peptide based microarrays are circumvented by directly producing our protein array on the basis of a DNA array template via cell-free expression. As DNA is stable within a large range of temperatures, pH values and other environmental conditions it proves to be an ideal molecule for storing protein information.  
</div>
+
</p>
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__2" id="fn__2" name="fn__2">2)</a></sup>  
+
<a style="float:left; clear:both;" class="wikilink2" href="https://2015.igem.org/Team:Freiburg/Project/iRIf" title="iRif">iRIf Detection Method</a>  
<a target="_Blank" href="http://onlinelibrary.wiley.com/doi/10.1002/adma.201100464/abstract">
+
<p>
Gervais et al., 2011. Microfluidic Chips for Point-of-Care Immunodiagnostics. Adv. Mater. Vol 23. doi: 10.1002/adma.201100464</a>
+
This emerging detection method enables a fast, sensitive and label free detection of binding processes. Binding of the serum originated antibody can be detected directly, omitting the incubation of the sample with a second detection antibody, thus making the detecting cheaper and faster. If needed, the signal can be further amplified with a secondary antibody, if specificity of binding remains unclear or the signal needs to be enhanced. This secondary antibody does also not require any fluorescent or enzymatic labeling.
</div>
+
</p>
 +
 +
<a style="float:left; clear:both;" class="wikilink2" href="https://2015.igem.org/Team:Freiburg/Results/Own_Device" title="iRif">Small Detection Device</a>
 +
<p>
 +
 +
</p>
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__6" id="fn__6" name="fn__6">3)</a></sup>
 
<a target="_Blank" href="http://www.nature.com/nature/journal/v442/n7101/full/nature05064.html">
 
Yager et al., 2006. Microfluidic diagnostic technologies for gloal public health. Nature, Vol. 442. doi:10.1038/nature05064</a>
 
 
</div>
 
</div>
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__23" id="fn__18" name="fn__23">4)</a></sup>  
+
<div class="content_box">  
<a target="_Blank" href="http://informahealthcare.com/doi/abs/10.1586/14737159.3.2.153">
+
<span id="Outlook" class="anchor"></span>
Jain KK. Nanodiagnostics: application of nanotechnology in molecular diagnostics. Expert Rev Mol Diagn 2003; 3: 153–161.</a>
+
<h2 class="sectionedit6">Outlook</h2>
</div>
+
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__28" id="fn__20" name="fn__28">5)</a></sup>
+
<div class="image_box right">
<a class="urlextern" href="http://apps.who.int/iris/bitstream/10665/81965/1/9789241564588_eng.pdf" rel="nofollow" target="_Blank" title="http://apps.who.int/iris/bitstream/10665/81965/1/9789241564588_eng.pdf">WHO, World Health Statistics Report, 2013</a>
+
<br>
</div>
+
<img src="https://static.igem.org/mediawiki/2015/e/e8/Freiburg_outlook.jpeg" width="250px">
 +
</div>
 +
 
 +
 
 +
<p>
 +
The future of diagnostics may lie in home-care devices based on microfluidic Lab-on-a-Chip systems. These are supposed to perform assays at a sensitivity, specificity and reproducibility similar to those of central laboratory analyzers. However, the user only needs to apply one drop of blood. <br>
 +
Especially people in developing countries could perform routine testing to detect the presence of infectious pathogens like influenza or sexually transmittable diseases like <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Diseases#AIDS" title="AIDS">AIDS</a> or <a clas="wikilink1" href="https://2015.igem.org/Team:Freiburg/Project/Diseases#Syphilis" title="Syphilis">syphilis</a>
 +
<sup><a class="fn_top" href="#fn__2" id="fnt__2" name="fnt__2">2)</a>
 +
</sup>.
 +
<br>
 +
The DiaCHIP may be scaled down to a size suitable for smaller medical practices or mobile applications. Thereby it complements the existing techniques that are either small and handy but are only able to detect a limited spectrum of antibodies or are so huge that an efficient use is only possible in clinical facilities. We showed the basic feasibility of such a device with our <a class="wikilink1" href="https://2015.igem.org/Team:Freiburg/Results/Own_Device" title="own_device">rebuilt setup</a> and the successful <a href="https://2015.igem.org/Team:Freiburg/Results">detection of anti-tetanus antibodies in human blood serum</a>. <br>
 +
Core characteristics of the device are its simplicity, the low cost of the components and the rapid generation of a final evaluable result. Even though the DiaCHIP is still at an experimental stage, some improvements may render it easy to handle even for untrained users.
 +
</p>
  
<div class="fn"><sup><a class="fn_bot" href="#fnt__30" id="fn__21" name="fn__30">6)</a></sup>
 
<a class="urlextern" href="http://apps.who.int/iris/bitstream/10665/75181/1/9789241503839_eng.pdf" rel="nofollow" target="_Blank" title="http://apps.who.int/iris/bitstream/10665/75181/1/9789241503839_eng.pdf">WHO, Global incidence and prevalence of selected curable sexually transmitted infections, 2008</a>
 
</div>
 
<div class="fn"><sup><a class="fn_bot" href="#fnt__31" id="fn__22" name="fn__31">7)</a></sup>
 
<a target="_Blank" href="http://cid.oxfordjournals.org/content/32/3/331.short">
 
Guerrant et al., 2001.Practice guidelines for the management of infectious diarrhea. Clinical Infectious Diseases, Vol. 32. doi: 10.1086/318514</a></div>
 
 
</div>
 
</div>
  
 +
<div class="content_box">
 +
<div class="footnotes">
 +
<h2>References</h2>
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__1" id="fn__1" name="fn__1">1)</a></sup>
 +
<a target="_Blank" href="http://www.who.int/whr/2002/en/whr02_en.pdf?ua=1">
 +
WHO, 2002. World Health Report.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__2" id="fn__2" name="fn__2">2)</a></sup>
 +
<a target="_Blank" href="http://www.nature.com/nature/journal/v442/n7101/abs/nature05064.html">
 +
Yager et al., 2006. Microfluidic diagnostic technologies for gloal public health. Nature.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__3" id="fn__3" name="fn__3">3)</a></sup>
 +
<a target="_Blank" href="http://onlinelibrary.wiley.com/doi/10.1002/adma.201100464/abstract">
 +
Gervais et al., 2011. Microfluidic Chips for Point-of-Care Immunodiagnostics. Adv. Mater.</a>
 +
</div>
  
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__4" id="fn__4" name="fn__4">4)</a></sup>
 +
<a target="_Blank" href="http://pubs.rsc.org/en/content/articlehtml/2012/lc/c2lc21204h">
 +
Chin et al., 2011. Commercialization of microfluidic point-of-care diagnostic devices. Royal Society of Chemistry.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__5" id="fn__5" name="fn__5">5)</a></sup>
 +
<a target="_Blank" href="http://www.ncbi.nlm.nih.gov/pubmed/?term=9130472">
 +
Ring, 1997. Allergy and modern society: Does “‘Western life style’” promote the development of allergies? Int. Arch. Allergy Immunol.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__6" id="fn__6" name="fn__6">6)</a></sup>
 +
<a target="_Blank" href="http://onlinelibrary.wiley.com/doi/10.1046/j.1365-3083.1999.00640.x/abstract">
 +
Arbuckle et al., 1999. The development of lupus humoral autoimmunity for anti-Sm autoantibodies is consistent with predictable sequential B-cell epitope spreading. Scand J Immunol.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__7" id="fn__7" name="fn__7">7)</a></sup>
 +
<a target="_Blank" href="http://www.clinchem.org/content/22/8/1243.abstract">
 +
Wisdom, 1976. Enzyme-immunoassay. Clinical Chemistry.</a>
 +
</div>
  
</html>
+
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__8" id="fn__8" name="fn__8">8)</a></sup>
 +
<a target="_Blank" href="http://link.springer.com/article/10.1007%2Fs00430-006-0032-z">
 +
Sauerbrei et al., 2006. Herpes simplex and varicella-zoster virus infections during pregnancy: current concepts of prevention, diagnosis and therapy. Part 2: Varicella-zoster virus infections. Med Microbiol Immunol.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__9" id="fn__9" name="fn__9">9)</a></sup>
 +
<a target="_Blank" href="http://www.sciencedirect.com/science/article/pii/S0166093499000397">
 +
Usuda et al., 1999. Serological detection of hepatitis B virus genotypes by ELISA with monoclonal antibodies to type-specific epitopes in the preS2-region product. Journal Virol. Methods.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__10" id="fn__10" name="fn__10">10)</a></sup>
 +
<a target="_Blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2395899/">
 +
Carlier et al., 1980. Evaluation of the enzyme-linked immunosorbent assay (ELISA) and other serological tests for the diagnosis of toxoplasmosis. Bull. World Health Organization.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__11" id="fn__11" name="fn__11">11)</a></sup>
 +
<a target="_Blank" href="http://jid.oxfordjournals.org/content/179/Supplement_1/S192.long">
 +
Ksiazek et al., 1999. ELISA for the detection of antibodies to Ebola viruses. Journal of Infectious Diseases</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__12" id="fn__12" name="fn__12">12)</a></sup>
 +
<a target="_Blank" href="http://www.epa.gov/radiation/docs/cleanup/nanotechnology/chapter-3-lab-on-a-chip.pdf">
 +
Lab-on-a-Chip systems.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__13" id="fn__13" name="fn__13">13)</a></sup>
 +
<a target="_Blank" href="http://www.biochemia-medica.com/content/ilza-salamunic-laboratory-diagnosis-autoimmune-diseases-new-technologies-old-dilemmas">
 +
Salamunic, 2009. Laboratory diagnosis of autoimmune diseases – new technologies, old dilemmas. Biochemia Medica.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__14" id="fn__14" name="fn__14">14)</a></sup>
 +
<a target="_Blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3991778/">
 +
Mao & Huang, 2012. Exploiting mechanical biomarkers in microfluidics. Lab Chip.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__15" id="fn__15" name="fn__15">15)</a></sup>
 +
<a target="_Blank" href="http://pubs.rsc.org/en/content/articlepdf/2010/cs/b820557b">
 +
Roth et al., 2009. Microfluidic lab-on-a-chip platforms: requirements, characteristics and applications. Chemical Society Reviews.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__16" id="fn__16" name="fn__16">16)</a></sup>
 +
<a target="_blank" href="http://www.pabst-publishers.de/Medizin/buecher/3899671481_i.htm">
 +
Fritzler, 2014. New technologies in the detection of autoantibodies: Evaluation of addressable laser bead immunoassays (ALBIA).</a>
 +
</div>
  
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__17" id="fn__17" name="fn__17">17)</a></sup>
 +
<a target="_Blank" href="http://europepmc.org/abstract/med/10342047">
 +
Meheus et al., 1999. Multicenter validation of recombinant, natural and synthetic antigens used in a single multiparameter assay for the detection of specific anti-nuclear antibodies in con- nective tissue disorders. Clin Exp Rheumatol.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__18" id="fn__18" name="fn__18">18)</a></sup>
 +
<a target="_blank" href="http://apps.who.int/iris/bitstream/10665/81965/1/9789241564588_eng.pdf">
 +
WHO, 2013. World Health Statistics Report.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__19" id="fn__19" name="fn__19">19)</a></sup>
 +
<a target="_blank" href="http://apps.who.int/iris/bitstream/10665/75181/1/9789241503839_eng.pdf">
 +
WHO, 2008. Global incidence and prevalence of selected curable sexually transmitted infections.</a>
 +
</div>
 +
 +
<div class="fn">
 +
<sup><a class="fn_bot" href="#fnt__20" id="fn__20" name="fn__20">20)</a></sup>
 +
<a class="urlextern" href="http://cid.oxfordjournals.org/content/32/3/331.short">
 +
Guerrant et al., 2001. Practice guidelines for the management of infectious diarrhea. Clinical Infectious Diseases.</a>
 +
</div>
 +
 +
 +
</div>
 +
</div>
 +
</html>
 +
<!-- Labjournal content ends here -->
 
{{Freiburg/wiki_content_end}}
 
{{Freiburg/wiki_content_end}}

Revision as of 17:24, 18 September 2015

""

Julika arbeitet dran! Finger weg! :)

Today's Applications of Immunodiagnostics

In the world's poorest countries more than half of the deaths are due to infectious diseases – in the wealthiest countries it is less than 5% 1) .

The Field of Diagnostics

Medical diagnostics comprise the whole process of tracing the source leading to a patient's symptoms. Usually, it is understood as the identification of a pathogen or a malfunction responsible for the illness.
To achieve an efficient disease treatment, clinical diagnostics are mostly divided into the following steps:

  • A clinician, interviewing the patient and considering his medical history, risk factors and current problems, proposes a certain differential diagnosis, thus pre-limiting the spectrum of possible diseases.

  • This is usually followed by the performance of diagnostic tests (normally in a central laboratory) to confirm the differential diagnosis and to clearly identify or at least further limit possible causes of the symptoms.

  • Finally, this leads to a treatment consisting of medication, surgery, hospitalization or discharge.


Interest in the so called Point-Of-Care (POC) diagnostics increased dramatically 2) 3) in the last decades. POC diagnostics (or bedside diagnostics) are diagnostic tests that can be performed directly at a patient's side or even bedside. The output of such a test is immediately available – thus circumventing the usually necessary sending of samples to external labs. The term POC encompasses many possible end-use settings outside of a centralized testing facility like emergency settings, regional health clinics, medical practices as well as home or mobile use.
These tests consist of common devices that are present in everyday life, such as AB0-testing, blood glucose testing, blood gas and electrolytes analysis, pregnancy testing and cholesterol screening.
For the near future an increase in the amount of products for POC diagnostic is predicted 4) , thereby confirming the need for such applications. In the face of aging populations, spreading of infectious diseases especially in the developing world, biohazard threats and increasing numbers of autoimmune diseases and allergies in the developed world 5) 6) , POC tests become inevitable.
But these devices also are convenient methods for improving everyday life: a drop of blood could easily reveal the physical cause of feelings of discomfort, such as a the lack of certain metabolic substances. A simple diet suggestion may thus increase life quality and health in one go.

Current Diagnostic Methods

The four most common centralized laboratory techniques are blood chemistry, immunoassays, nucleic-acid amplification tests and flow cytometry 2) . As the DiaCHIP is an immunodiagnostic method we will focus on this part of diagnostics and compare it to commonly applied methods in today's clinics and labs. Immunodiagnostics are based on antigen-antibody interactions, which might be present within the body fluids of a patient. By detecting and identifying key proteins within a patient's sample like blood or urine, these tests enable to distinguish between major classes of diseases like infectious diseases, metabolic diseases, cardiovascular diseases or cancer 3) . Immunodiagnostics are realized by immunoassays, which summarize a wide range of formats, allowing quantification and monitoring of small molecules, large proteins and even whole pathogens 2) . Three prominent examples of immunoassays are lateral flow tests, ELISAs and miniaturized immunoassays (microarrays).

ELISA - sensitive but time consuming, no multiplexing:

The commonly used ELISA (enzyme linked immunosorbent assay) only provides limited capacity for multiplexing as only one specific disease can pe detected per well. It takes several hours and large amounts of sample material as well as antibodies (0.05-1.2 µg antibody per well 1) ) to test for all the possible diseases fitting the patient's symptoms.

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Lateral flow test - simple and rapid, no multiplexing, limited sensitivity

Lateral flow tests are much faster to perform but can only detect one molecule of interest at once. Moreover, they are known to perform rather poorly in terms of sensitivity (!!!!!!!!!!!!LINK!!!!!!!!!!!!!!).

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Miniaturized Immunoassay (Microarray) and Lab-on-a-Chip (LOC)

Miniaturized immunoassays (microarrays) combined with microfluidic bioanalysis have been shown to hold great potential regarding future diagnostics 2) . In comparison to ELISAs and lateral flow tests for, they already hold the possibility for multiplexing.

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Laser-microbeads !!!!!!!!!!MISSING!!!!!!!!!!

Zum Teil wurde darüber bei Autoimmunkrankheiten geschrieben, nochmal umformulieren



Even though current diagnostic methods provide reliable information on a broad range of diseases, they still encounter various restrictions. As already mentioned, time and the possibility of multiplexing are some crucial issues regarding future diagnostics. For instance, ELISAs do not provide a possibility for multiplexing and performing the test lasts at least some hours.
Especially for the methods mentioned at last, a lot of expensive equipment is needed for analyzing the results. This leads either to conflicts regarding involved costs or due to the size of the devices that are mostly far from portable. This restricts the use to developed countries and special facilities.
Besides those complications, all the methods described above rely on a solid material with immobilized proteins on it. Anyhow, proteins are difficult to handle as they are rather unstable. The storage of proteins therefore requires particular conditions that are not easy to provide in some parts of the world.

Limitations of Currently Available (Immunodiagnostic) Tests




As a lot of diseases can nowadays be treated quite well, fast diagnosis is essential for an immediate onset of appropriate treatment. It depicts a critical factor for the patient's health and life and significantly determines the wellbeing. Moreover, improved diagnostics are not only required regarding the health of a patient: 70% of healthcare expenses are linked to diagnostic tests 14) . Therefore, improvements in diagnostic technologies have the potential to drastically reduce overall healthcare costs while at the same time increasing health as such.

Diagnostic tests are usually developed for use in air-conditioned laboratories with refrigerated storage of chemicals, a constant supply of calibrators and reagents, highly trained personal and rapid transportation of samples. This setting is not available for most developing countries 2) . Thus, most of the substantial progress achieved in the public health and Point-of-Care sector has only been advantageous to the more developed part of the world.

According to the WHO 2.5 out of 6 billion people lack basic sanitation, 2 billions do not have access to electricity and more than 1 billion lack basic healthcare services and clean drinking water 18) . Moreover, 50% of all deaths in the most impoverished developing countries are a result of infectious diseases, whereas in the wealthiest developed countries this concerns less than 5% 1).

Therefore, transforming existing technologies into protable applications is a leap forward to improve general health all over the world. These applications should be robust and sensitive enough for the use outside of equipped laboratories. Outbreaks and spreading of potential epidemic diseases or sexually transmitted infections could be controlled by a rapid diagnosis and immediate onset of appropriate treatment 2).

A need for such technologies is urgent: 500 million people between the age of 15 and 49 are infected with curable sexually transmitted infections like chlamydia, gonorrhea, syphilis or trichomoniasis each year 19) ! However, the infrastructure currently available for the diagnosis of infectious diseases often proves to be too slow and expensive to be practicable for third world countries. This can be illustrated with the identification of pathogens of an infectious diarrhea taking 2-4 days – even in the best developed laboratories of the world 20) .

According to the problems and needs discussed, devices for future diagnostics should meet the following requirements:

  • Speed - a fast diagnosis reduces time until the beginning of treatment, preventing the spread of epidemic diseases and reducing the severity of a disease

  • Simplicity - the handling necessary to perform the test should be as easy as possible

  • Low-cost - Point-of-Care diagnostics need to be affordable in developing countries

  • Unambiguity - the output of Point-of-Care tests requires the clarity of a yes/no answer

  • Storage under sub-optimal conditions - since defined conditions may not be available, the device has to be stable under extreme conditions concerning temperature, pH or humidity for example

  • Multiplexing - covering a broad spectrum of possible diseases in only one device allows for a differential diagnosis with the need for only one sample of the patient

How Can Our DiaCHIP Contribute to Solving These Problems?

Our approach, the DiaCHIP, basically combines three promising techniques in one device, offering great potential to improve future diagnostics.

Miniaturized Immunoassays Combined with Microfluidics

Miniaturized immunoassays enable immense multiplexing. By immobilizing hundreds of different antigens it is possible to screen a patient’s sample for the existence of many potential antibodies. This allows customized combinations of antigens, thereby providing the optimal detection system for the respective application.
For the microfluidic device only small volumes of reagents and samples are necessary making it cost-efficient additionally to saving time.

Microarray Copying (Generating Protein Arrays From DNA Array Templates)

Storage and handling problems of conventional peptide based microarrays are circumvented by directly producing our protein array on the basis of a DNA array template via cell-free expression. As DNA is stable within a large range of temperatures, pH values and other environmental conditions it proves to be an ideal molecule for storing protein information.

iRIf Detection Method

This emerging detection method enables a fast, sensitive and label free detection of binding processes. Binding of the serum originated antibody can be detected directly, omitting the incubation of the sample with a second detection antibody, thus making the detecting cheaper and faster. If needed, the signal can be further amplified with a secondary antibody, if specificity of binding remains unclear or the signal needs to be enhanced. This secondary antibody does also not require any fluorescent or enzymatic labeling.

Small Detection Device

Outlook


The future of diagnostics may lie in home-care devices based on microfluidic Lab-on-a-Chip systems. These are supposed to perform assays at a sensitivity, specificity and reproducibility similar to those of central laboratory analyzers. However, the user only needs to apply one drop of blood.
Especially people in developing countries could perform routine testing to detect the presence of infectious pathogens like influenza or sexually transmittable diseases like AIDS or syphilis 2) .
The DiaCHIP may be scaled down to a size suitable for smaller medical practices or mobile applications. Thereby it complements the existing techniques that are either small and handy but are only able to detect a limited spectrum of antibodies or are so huge that an efficient use is only possible in clinical facilities. We showed the basic feasibility of such a device with our rebuilt setup and the successful detection of anti-tetanus antibodies in human blood serum.
Core characteristics of the device are its simplicity, the low cost of the components and the rapid generation of a final evaluable result. Even though the DiaCHIP is still at an experimental stage, some improvements may render it easy to handle even for untrained users.

References