Difference between revisions of "Team:Cambridge-JIC/ImageJ"
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<div style="width: 80%; margin: 30px 50px;color:#000"> | <div style="width: 80%; margin: 30px 50px;color:#000"> | ||
<h1 style="line-height:1.295em"> ImageJ Plugin </h1> | <h1 style="line-height:1.295em"> ImageJ Plugin </h1> | ||
+ | <hr><p>ImageJ is an image processing tool used in many labs across the world. We | ||
+ | wrote a plugin to integrate control over Openscope in ImageJ.</p> | ||
+ | <hr> | ||
</div></div></section> | </div></div></section> | ||
+ | |||
+ | |||
+ | <!-- | ||
+ | |||
+ | <Download here - link to | ||
+ | https://2015.igem.org/images/Cambridge-JIC-OpenScope-ImageJ.zip > | ||
+ | |||
+ | After unzipping the above file into your ImageJ plugins folder (You | ||
+ | should see a folder called openscope within the plugins folder after | ||
+ | this). Then restart ImageJ if it was open or start it up. You should see | ||
+ | an entry "openscope" under the Plugins menu now. | ||
+ | |||
+ | <imagej1.png> | ||
+ | |||
+ | Then click Plugins > openscope > Connection Settings and enter in the ip | ||
+ | address of OpenScope (If you are connected to the OPENSCOPE wifi | ||
+ | network, this is 192.168.0.1) and your username and password. (By | ||
+ | default, username is admin and password is test) | ||
+ | |||
+ | <imagej2.png> | ||
+ | |||
+ | Now you don't need to do that again. You can start up the main control | ||
+ | panel by going to Plugins > openscope > Start Connection | ||
+ | |||
+ | You will get a control panel to control the leds and motors. | ||
+ | |||
+ | <imagej3.png> | ||
+ | |||
+ | By opening Live View, be prepared to become immersed in a live stream of | ||
+ | the microscope just like in webshell. Directly from ImageJ. | ||
+ | |||
+ | <imagej4.png> | ||
+ | |||
+ | You can still use keyboard controls (WASD for x/y. Q and E for z and Z | ||
+ | for switch LED - same as webshell) to control the motors and leds inside | ||
+ | the control panel or in the live view. | ||
+ | |||
+ | This interface also allows for capturing images directly from the | ||
+ | microscope and importing them straight into imagej with the click of a | ||
+ | button. | ||
+ | |||
+ | <imagej5.png> | ||
+ | |||
+ | Now you can use your other favourite ImageJ plugins to perform image | ||
+ | analysis on your captured images. Of course, you can import previously | ||
+ | taken images by visiting the gallery and right clicking to save them to | ||
+ | disk and import them manually into ImageJ. | ||
+ | |||
+ | --> | ||
</html> | </html> | ||
{{:Team:Cambridge-JIC/Templates/Footer}} | {{:Team:Cambridge-JIC/Templates/Footer}} |
Revision as of 22:32, 18 September 2015