Difference between revisions of "Team:Cambridge-JIC/ImageJ"

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<h1 style="line-height:1.295em"> ImageJ Plugin </h1>
 
<h1 style="line-height:1.295em"> ImageJ Plugin </h1>
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<hr><p>ImageJ is an image processing tool used in many labs across the world. We
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wrote a plugin to integrate control over Openscope in ImageJ.</p>
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<hr>
 
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<!--
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<Download here - link to
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https://2015.igem.org/images/Cambridge-JIC-OpenScope-ImageJ.zip >
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After unzipping the above file into your ImageJ plugins folder (You
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should see a folder called openscope within the plugins folder after
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this). Then restart ImageJ if it was open or start it up. You should see
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an entry "openscope" under the Plugins menu now.
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<imagej1.png>
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Then click Plugins > openscope > Connection Settings and enter in the ip
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address of OpenScope (If you are connected to the OPENSCOPE wifi
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network, this is 192.168.0.1) and your username and password. (By
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default, username is admin and password is test)
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<imagej2.png>
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Now you don't need to do that again. You can start up the main control
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panel by going to Plugins > openscope > Start Connection
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You will get a control panel to control the leds and motors.
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<imagej3.png>
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By opening Live View, be prepared to become immersed in a live stream of
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the microscope just like in webshell. Directly from ImageJ.
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<imagej4.png>
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You can still use keyboard controls (WASD for x/y. Q and E for z and Z
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for switch LED - same as webshell) to control the motors and leds inside
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the control panel or in the live view.
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This interface also allows for capturing images directly from the
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microscope and importing them straight into imagej with the click of a
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button.
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<imagej5.png>
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Now you can use your other favourite ImageJ plugins to perform image
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analysis on your captured images. Of course, you can import previously
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taken images by visiting the gallery and right clicking to save them to
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disk and import them manually into ImageJ.
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Revision as of 22:32, 18 September 2015

CAMBRIDGE-JIC

ImageJ Plugin

ImageJ is an image processing tool used in many labs across the world. We wrote a plugin to integrate control over Openscope in ImageJ.