Difference between revisions of "Team:Cambridge-JIC/ImageJ"

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<h3>Instructions</h3>
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<p>Download and unzip the file above into your ImageJ plugins folder. You should see a folder called OpenScope within the Plugins folder after this. Then restart ImageJ if it was open or start it up. You should see an entry "OpenScope" under the Plugins menu now.</p>
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<center><img src="https://static.igem.org/mediawiki/2015/9/90/CamJIC-ImageJ-1.png" style="width:400px"></center>
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<p>Then click Plugins > OpenScope > Connection Settings and enter in the ip address of OpenScope (If you are connected to the OPENSCOPE wifi network, this is 192.168.0.1) and your username and password. (By default, username is admin and password is test).</p>
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<center><img src="https://static.igem.org/mediawiki/2015/6/67/CamJIC-ImageJ-2.png" style="width:400px"></center>
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<p>Now you will not need to do that again. You can start up the main control panel by going to Plugins > openscope > Start Connection. You will get a control panel to control the LEDs and motors of the OpenScope.</p>
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<center><img src="https://static.igem.org/mediawiki/2015/5/5d/CamJIC-ImageJ-3.png" style="width:400px"></center>
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<p>By opening Live View, be prepared to become immersed in a live stream of the microscope just like in <a href="//2015.igem.org/Team:Cambridge-JIC/Webshell" class="blue">WebShell</a>. Directly from ImageJ.
 
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<!--
 
<!--
  
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<Download here - link to
 
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https://2015.igem.org/images/Cambridge-JIC-OpenScope-ImageJ.zip >
 
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After unzipping the above file into your ImageJ plugins folder (You
 
−
should see a folder called openscope within the plugins folder after
 
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this). Then restart ImageJ if it was open or start it up. You should see
 
−
an entry "openscope" under the Plugins menu now.
 
−
 
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<imagej1.png>
 
−
 
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Then click Plugins > openscope > Connection Settings and enter in the ip
 
−
address of OpenScope (If you are connected to the OPENSCOPE wifi
 
−
network, this is 192.168.0.1) and your username and password. (By
 
−
default, username is admin and password is test)
 
−
 
−
<imagej2.png>
 
−
 
−
Now you don't need to do that again. You can start up the main control
 
−
panel by going to Plugins > openscope > Start Connection
 
−
 
−
You will get a control panel to control the leds and motors.
 
  
−
<imagej3.png>
 
  
−
By opening Live View, be prepared to become immersed in a live stream of
 
−
the microscope just like in webshell. Directly from ImageJ.
 
  
 
<imagej4.png>
 
<imagej4.png>

Revision as of 22:46, 18 September 2015

CAMBRIDGE-JIC

ImageJ Plugin

ImageJ is an image processing tool used in many labs across the world. We wrote a plugin to integrate control over Openscope in ImageJ.

ImageJ Plugin

Instructions

Download and unzip the file above into your ImageJ plugins folder. You should see a folder called OpenScope within the Plugins folder after this. Then restart ImageJ if it was open or start it up. You should see an entry "OpenScope" under the Plugins menu now.

Then click Plugins > OpenScope > Connection Settings and enter in the ip address of OpenScope (If you are connected to the OPENSCOPE wifi network, this is 192.168.0.1) and your username and password. (By default, username is admin and password is test).

Now you will not need to do that again. You can start up the main control panel by going to Plugins > openscope > Start Connection. You will get a control panel to control the LEDs and motors of the OpenScope.

By opening Live View, be prepared to become immersed in a live stream of the microscope just like in WebShell. Directly from ImageJ.