Difference between revisions of "Team:Freiburg/Results/Own Device"

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<h1 class="sectionedit1">Results: Device</h1>
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<div class="level1">
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<p>
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Here you'll see what we were able to measure with our own device, as well as <strong>how to build your own</strong>, low-priced iRIf device.
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<!-- EDIT1 SECTION "Results: Device" [1-160] -->
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<h1 class="sectionedit2">Our own device is able to detect antigen/antibody binding</h1>
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<div class="level1">
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<div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/f/fc/Freiburg_results-result_device_20150818.jpg" title="results:result_device_20150818.jpg"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/f/fc/Freiburg_results-result_device_20150818.jpg" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/f/fc/Freiburg_results-result_device_20150818.jpg" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>Result of the binding of rabbit/anti-rabbit measured in our own device. A: The first picture of the measurement. B: The last picture of the measurement. C: The quotient picture of first and last picture. D: A schematic illustration of the spots on the slide </div></div></div>
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<p>
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For testing our device we bound proteins derived from rabbits onto an iRIf slide in distinct spots. The proteins used were polyclonal anti-HCV antibodies, which we then aimed to detect with anti-rabbit antibodies. The reason for using the rabbit/anti-rabbit couple in this series of experiments was mereley that we had had ample quantities of both left in our stocks.
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The binding layer on the iRIf slide consisted of an APTES/PDITC surface. The spots on the slide were made by piptetting 3µl (500µg/ml) rabbit-anti-HCV protein and 3 µl (1 mg/ml) BSA  in an alternating pattern onto the slide. After incubation, the slide was blocked for 30 min in BSA solution.
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</p>
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<p>
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A Canon 50D camera was used to record the measurement and was set to take one picture every 5 seconds. The exposure time was set so that the pixels in the image were approx. 80% of maximum light saturation before the solution was flown onto the chip.
 +
</p>
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<p>
 +
The antibody solution was pipeted into the flow-chamber without the use of any microfluidics device. Instead a syringe was loaded with 500 µl [5 µg/ml] anti-rabbit antibody solution (diluted in PBS) and slowly released into the binding chamber of the device by gently dispensing the solution from the syringe.
 +
</p>
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<p>
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As can be seen in the figure C, the quotient picture clearly showed binding of anti-rabbit to the rabbit protein spots. The BSA control-spots showed none or negligible unspecific binding.
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</p>
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</div>
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<!-- EDIT2 SECTION "Our own device is able to detect antigen/antibody binding" [161-1956] -->
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<h1 class="sectionedit3">How to build your own device</h1>
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<div class="level1">
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</div>
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<!-- EDIT3 SECTION "How to build your own device" [1957-1999] -->
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<h2 class="sectionedit4">General principle</h2>
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<div class="level2">
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<div class="thumb2 tright" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/e/ed/Freiburg_results-device_build_composition.jpg" title="results:device_build_composition.jpg"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/e/ed/Freiburg_results-device_build_composition.jpg" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/e/ed/Freiburg_results-device_build_composition.jpg" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>An illustration showing the exact setup of our device from a top perspective</div></div></div>
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<p>
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As can be seen in the illustration below, the basic setup is fairly simple. Light from an LED enters a lense where the light rays are made parallel. To achieve this, the distance from LED to the lense has to be exactly one focal lenght.
 +
The light then hits the iRIf slide, where it gets reflected (reflecting at the same angle it hit the slide) and enters a second lense, whose purpose is to project a sharp image of the slide onto the CCD chip of the camera.
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</p>
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<h2 class="sectionedit5">Construction guidance</h2>
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<div class="level2">
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<p>
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To build your own iRIf device, we used the following parts:
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</p>
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<div class="table sectionedit6"><table class="inline">
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<th class="col0"> Part </th><th class="col1"> Description </th><th class="col2"> Manufacturer / Partname </th>
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<td class="col0">A fairly strong LED</td><td class="col1"> In our case a 3W green 520nm LED</td><td class="col2">Cree XP-E on star circuit board</td>
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</tr>
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<tr class="row2">
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<td class="col0">A cooling element</td><td class="col1">Used to prevent the LED from overheating</td><td class="col2">Fischer Elektronik ICK S</td>
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</tr>
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<tr class="row3">
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<td class="col0">A constant-current-source</td><td class="col1">To ensure static LED light (no flickering)</td><td class="col2">Roschwege GmbH KSQ-3W</td>
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</tr>
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<td class="col0">An AC/DC rectifier</td><td class="col1">Used to grant direct current to the LED</td><td class="col2">Goobay 67951</td>
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</tr>
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<tr class="row5">
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<td class="col0">Two optical lenses</td><td class="col1">Here we used two identical 60mm lenses</td><td class="col2">Thorlabs AC254-060-A</td>
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</tr>
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<tr class="row6">
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<td class="col0">A camera</td><td class="col1">We used a SLR camera</td><td class="col2">Canon 550D</td>
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</tr>
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<tr class="row7">
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<td class="col0">A microfluidics chamber</td><td class="col1">Our chamber consists of an iRIf slide attached to a PDMS flow chamber</td><td class="col2">Made ourselves</td>
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</tr>
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<tr class="row8">
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<td class="col0">Magnets</td><td class="col1">Used to attach the flow-cell to the device</td><td class="col2">5mm Neodymium magnets</td>
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</tr>
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<tr class="row9">
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<td class="col0">A small syringe</td><td class="col1">We used a regular 10 ml syringe</td><td class="col2">BRAUN INJEKT 10ml</td>
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<tr class="row10">
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<td class="col0">A microfluidic tube</td><td class="col1"> Used to connect the flow chamber with the syringe</td><td class="col2">-</td>
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<tr class="row11">
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<td class="col0">A case for the device</td><td class="col1"> 5 mm thick acrylic glass cutouts to hold the parts in place</td><td class="col2"> Ordered at <a class="urlextern" href="http://formulor.com" rel="nofollow" target="_Blank" title="http://formulor.com">http://formulor.com</a></td>
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<!-- EDIT6 TABLE [2713-3672] --><div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/6/69/Freiburg_results-device_3d_perp.png" title="results:device_3d_perp.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/6/69/Freiburg_results-device_3d_perp.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/6/69/Freiburg_results-device_3d_perp.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>A 3D model of the design of our device, build from the vector files used to order the parts</div></div></div><div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/8/88/Freiburg_results-device_3d_no_walls.png" title="results:device_3d_no_walls.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/8/88/Freiburg_results-device_3d_no_walls.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/8/88/Freiburg_results-device_3d_no_walls.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>The 3D model of our device without walls or top part. Parts have been colorized for clarification - Green: The wall where light exits the device and enters into the camera; Pink: a platform holding Cooling-Element+LED in place; Blue: platforms for holding the lenses in place; White: rear end wall where the flow chamber is attached to. The slits in the top and bottom part are where the magnets have to be fixed</div></div></div><div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/4/4c/Freiburg_results-device_parts_vector.png" title="results:device_parts_vector.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/4/4c/Freiburg_results-device_parts_vector.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/4/4c/Freiburg_results-device_parts_vector.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>An image of the vector file used to order the parts. The vector file is used to laser out parts of a 5 mm acrylic glass board. Blue lines are cut out by the laser, gray lines/areas are engravings. Refer to the download link to downloaded the <acronym title="Scalable Vector Graphics">SVG</acronym>/Vector file.</div></div></div><div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/2/24/Freiburg_results-led_and_magnets_and_flowcell.png" title="results:led_and_magnets_and_flowcell.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/2/24/Freiburg_results-led_and_magnets_and_flowcell.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/2/24/Freiburg_results-led_and_magnets_and_flowcell.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>A: The LED glued to the cooling element with thermal adhesive; B: The 10 magnets, each 5x5x5 mm as well as a PDMS flowcell (depth of the flowchamber: 30 µm)</div></div></div>
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<a class="media" href="https://static.igem.org/mediawiki/2015/c/c9/Freiburg_diachip_device_manual_preview.png" title="diachip_device_manual_preview.png"><img alt="" class="media" src="https://static.igem.org/mediawiki/2015/c/c9/Freiburg_diachip_device_manual_preview.png" width="300"/></a>
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<a class="wikilink1" href="/igem2015/doku.php?id=tag:info&amp;do=showtag&amp;tag=info" rel="tag" title="tag:info">info</a>
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Revision as of 10:15, 12 September 2015

""

Results: Device

Here you'll see what we were able to measure with our own device, as well as how to build your own, low-priced iRIf device.

Our own device is able to detect antigen/antibody binding

Result of the binding of rabbit/anti-rabbit measured in our own device. A: The first picture of the measurement. B: The last picture of the measurement. C: The quotient picture of first and last picture. D: A schematic illustration of the spots on the slide

For testing our device we bound proteins derived from rabbits onto an iRIf slide in distinct spots. The proteins used were polyclonal anti-HCV antibodies, which we then aimed to detect with anti-rabbit antibodies. The reason for using the rabbit/anti-rabbit couple in this series of experiments was mereley that we had had ample quantities of both left in our stocks. The binding layer on the iRIf slide consisted of an APTES/PDITC surface. The spots on the slide were made by piptetting 3µl (500µg/ml) rabbit-anti-HCV protein and 3 µl (1 mg/ml) BSA in an alternating pattern onto the slide. After incubation, the slide was blocked for 30 min in BSA solution.

A Canon 50D camera was used to record the measurement and was set to take one picture every 5 seconds. The exposure time was set so that the pixels in the image were approx. 80% of maximum light saturation before the solution was flown onto the chip.

The antibody solution was pipeted into the flow-chamber without the use of any microfluidics device. Instead a syringe was loaded with 500 µl [5 µg/ml] anti-rabbit antibody solution (diluted in PBS) and slowly released into the binding chamber of the device by gently dispensing the solution from the syringe.

As can be seen in the figure C, the quotient picture clearly showed binding of anti-rabbit to the rabbit protein spots. The BSA control-spots showed none or negligible unspecific binding.

How to build your own device

General principle

An illustration showing the exact setup of our device from a top perspective

As can be seen in the illustration below, the basic setup is fairly simple. Light from an LED enters a lense where the light rays are made parallel. To achieve this, the distance from LED to the lense has to be exactly one focal lenght. The light then hits the iRIf slide, where it gets reflected (reflecting at the same angle it hit the slide) and enters a second lense, whose purpose is to project a sharp image of the slide onto the CCD chip of the camera.

Construction guidance

To build your own iRIf device, we used the following parts:

Part Description Manufacturer / Partname
A fairly strong LED In our case a 3W green 520nm LEDCree XP-E on star circuit board
A cooling elementUsed to prevent the LED from overheatingFischer Elektronik ICK S
A constant-current-sourceTo ensure static LED light (no flickering)Roschwege GmbH KSQ-3W
An AC/DC rectifierUsed to grant direct current to the LEDGoobay 67951
Two optical lensesHere we used two identical 60mm lensesThorlabs AC254-060-A
A cameraWe used a SLR cameraCanon 550D
A microfluidics chamberOur chamber consists of an iRIf slide attached to a PDMS flow chamberMade ourselves
MagnetsUsed to attach the flow-cell to the device5mm Neodymium magnets
A small syringeWe used a regular 10 ml syringeBRAUN INJEKT 10ml
A microfluidic tube Used to connect the flow chamber with the syringe-
A case for the device 5 mm thick acrylic glass cutouts to hold the parts in place Ordered at http://formulor.com
A 3D model of the design of our device, build from the vector files used to order the parts
The 3D model of our device without walls or top part. Parts have been colorized for clarification - Green: The wall where light exits the device and enters into the camera; Pink: a platform holding Cooling-Element+LED in place; Blue: platforms for holding the lenses in place; White: rear end wall where the flow chamber is attached to. The slits in the top and bottom part are where the magnets have to be fixed
An image of the vector file used to order the parts. The vector file is used to laser out parts of a 5 mm acrylic glass board. Blue lines are cut out by the laser, gray lines/areas are engravings. Refer to the download link to downloaded the SVG/Vector file.
A: The LED glued to the cooling element with thermal adhesive; B: The 10 magnets, each 5x5x5 mm as well as a PDMS flowcell (depth of the flowchamber: 30 µm)