Difference between revisions of "Team:UMaryland/Results"

Revision as of 06:59, 18 September 2015

Plating Tests

Negative Control (No Pressure)

Figure 1. Negative control was K1783002 (constitutive unstable RFP) grown in media without chloramphenicol. After 2-3 days, plates demonstrate fewer than 10 colonies per plate, suggesting that antibiotic resistance is now only minimally present in the culture.

Chloramphenicol Pressure Only

Figure 2. K1783002 (constitutive unstable RFP) grown in media with chloramphenicol. Colonies persist through several days of plating, suggesting that antibiotic resistance was maintained throughout the test.

Chlor + Hok-Sok Pressure

Figure 3. K1783003 (constitutive unstable RFP under Hok-Sok regulation) grown in media with chloramphenicol. Colonies persist through several days of plating, suggesting that antibiotic resistance was maintained throughout the test.

Hok-Sok Pressure Only

Figure 4. K1783003 (constitutive unstable RFP under Hok-Sok regulation) grown in media without chloramphenicol. Colonies persist through several days of plating, suggesting that antibiotic resistance was maintained throughout the test.

Fluorescence Studies

Analysis of Fluorescence Loss

Over time, colonies appear to stop producing RFP.

This effect occurs even when the culture is under chloramphenicol pressure.

This effect occurs much more slowly when the Hok-Sok cassette is adjacent to the RFP construct.

With or without added chloramphenicol, Hok-Sok appears to be able to maintain a relatively constant level of fluorescence.

Future Plans

Considerations

PCR of Hok-Sok Construct

Amplification of the Hok-Sok cassette is difficult due to the high inherent secondary structure in the construct. Hok ssDNA is capable of naturally folding into a stable secondary structure, resulting in early terminations and other side products. We recommend that a reaction buffer suitable for difficult templates be used, such as Phusion GC buffer + added DMSO.

Measuring OD of RFP Cultures

Due to the close proximity of the emission wavelength of RFP (584 nm) and the classical absorbance wavelength for measuring cell density (600 nm), it is difficult to accurately determine the cell density of cultures that are expressing RFP. Given more time to calibrate our testing measurements, we would either have used an alternative wavelength for measuring OD (>600 nm), used a hemocytometer as an alternate counting method, or switched to GFP as an alternative fluorescent marker whose emission wavelength differs from 600 nm by a greater amount.

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 <div style="float:left;width:450px;height:550px;">
-<p style="font-size:24px;text-align:left;font-family:Verdana, Geneva, sans-serif;">Chloramphenicol + Hok-Sok Pressure
+<p style="font-size:24px;text-align:left;font-family:Verdana, Geneva, sans-serif;">Chlor + Hok-Sok Pressure
 <p><img src = "https://static.igem.org/mediawiki/2015/5/56/UMDhschlorplate2.png"></p>
 <p style = "font-size:18px">Figure 3. K1783003 (constitutive unstable RFP under Hok-Sok regulation) grown in media with chloramphenicol. Colonies persist through several days of plating, suggesting that antibiotic resistance was maintained throughout the test.</p>