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| − | <h1 class="sectionedit1">pRIG15_13</h1> | + | <h1 class="sectionedit1"> </h1> |
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| − | To find the respective antibody against the putative dihydroxyacid dehydratase the group of Prof. Dr. Hust used a human naive antibody gene library. <sup><a class="fn_top" href="#fn__1" id="fnt__1" name="fnt__1">1)</a></sup> They thankfully provided us with the sequence of the anti-dihydroxyacid dehydratase already cloned into an expression vector.
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| − | <a class="media" href="https://static.igem.org/mediawiki/2015/8/8d/Freiburg_labjournal-cloning-prig15_13.jpg" title="labjournal:cloning:prig15_13.jpg"><img alt="" class="mediacenter" src="https://static.igem.org/mediawiki/2015/8/8d/Freiburg_labjournal-cloning-prig15_13.jpg" width="500"/></a>
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| − | To insert the sequence for the Salmonella antibody (anti-dehydroxyacid dehydratase) into pSB1C3 we designed Gibson primers with compatible overhangs that also included the start codon ATG. This fragment was amplified via <a clas="wikilink1" href="https://2015.igem.org/Team:Freiburg/Labjournals/Cloning/August#PCRbb13" title="PCRbb13">PCR</a> from the expression vectors we got from Prof. Dr. Hust and then assembled with the digested pSB1C3 backbone using Gibson assembly.
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| − | To prove correct insertion of our fragment we did a test digest (Link Labjournal) and sent the whole plasmid for sequencing.
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| − | We used the plasmids sent to us by Prof. Dr. Hust to express both proteins, Salmonella dihydroxyacid dehydratase and anti-dihydroxyacid dehydratase, in <em>E.coli</em>. We could show overexpression via a sds-page (Fig. 1) and western blot and we could additionally show interaction of both proteins with a western blot (Fig. 2)
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| − | <div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/c/c3/Freiburg_labjournal-cloning-salmonella_sdspage-1.png" title="labjournal:cloning:salmonella_sdspage-1.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/c/c3/Freiburg_labjournal-cloning-salmonella_sdspage-1.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/c/c3/Freiburg_labjournal-cloning-salmonella_sdspage-1.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>Figure 1. 12,5% SDS-PAGE analysis of the protein purification of <a href="http://parts.igem.org/Part:BBa_K1621006">S. Typhimurium antigen</a> (dehydroxyacid dehydratase) and <a href="http://parts.igem.org/Part:BBa_K1621007">S. Typhimurium antibody</a> (anti dehydroxyacid dehydratase). The protein purification was performed with gravity flow columns and Ni-NTA Agarose. The protein was eluated by 500mM Imidazole. The expected molecular weight for the S. Typhimurium antigen is 63 kDa and 37 kDa for the antibody, respectively. FT-Flowthrough, W-Wash, E-Elution </div></div></div><div class="thumb2 trien" style="width:510px"><div class="thumbinner"><a class="media" href="https://static.igem.org/mediawiki/2015/0/0a/Freiburg_labjournal-cloning-salmonella_westernblot-1.png" title="labjournal:cloning:salmonella_westernblot-1.png"><img alt="" class="mediabox2" src="https://static.igem.org/mediawiki/2015/0/0a/Freiburg_labjournal-cloning-salmonella_westernblot-1.png" width="500"/></a><div class="thumbcaption"><div class="magnify"><a class="internal" href="https://static.igem.org/mediawiki/2015/0/0a/Freiburg_labjournal-cloning-salmonella_westernblot-1.png" title="vergrößern"><img alt="" height="11" src="/igem2015/lib/plugins/imagebox/magnify-clip.png" width="15"/></a></div>Figure 2. Western Blot of <a href="http://parts.igem.org/Part:BBa_K1621006">S. Typhimurium antigen</a> (dehydroxyacid dehydratase) and <a href="http://parts.igem.org/Part:BBa_K1621007">S. Typhimurium antibody</a> (anti-dehydroxyacid dehydratase). (A) Western Blot of the antigen as well as of the antibody with anti-His HRP Conjugate. Both protein are His-tagged. The expected molecular weight for the S. Typhimurium antigen is 63 kDa and 37 kDa for the antibody, respectively. (B) In this Western Blot the S. Typhimurium antigen was analyzed by 12,5% SDS-PAGE. The purified S. Typhimurium antibody was used in a 1:100 dilution. Additionally this single chain antibody contains a c-Myc Tag. We used an anti-c-Myc antibody (1:1000; rabbit). For detection the anti-rabbit HRP antibody (1:5000) was used.</div></div></div>
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| − | Link to genebank file: <a class="media" href="https://static.igem.org/mediawiki/2015/9/9b/Freiburg_2015_BBa_K1621007.gb" title="2015_Freiburg_BBa_K1621007" src="https://static.igem.org/mediawiki/2015/9/9b/Freiburg_2015_BBa_K1621007.gb">BBa_K1621007.gb</a>.
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| − | <div class="fn"><sup><a class="fn_bot" href="#fnt__1" id="fn__1" name="fn__1">1)</a></sup>
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| − | <a class="urlextern" href="http://www.ncbi.nlm.nih.gov/pubmed/22703709" rel="nofollow" target="_Blank" title="http://www.ncbi.nlm.nih.gov/pubmed/22703709"> Meyer et al. 2012. Identification of immunogenic proteins and generation of antibodies against Salmonella Typhimurium using phage display. BMC biotechnology</a></div>
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