Difference between revisions of "Team:NYU Shanghai/Protocols"

Line 934: Line 934:
 
       </tr>
 
       </tr>
 
     </table>
 
     </table>
 +
    <br>
 +
    <table>
 +
    <tr>
 +
          <td><font color="#d66">Initial Denaturation</font></td>
 +
          <td><font color="#d66">98C</font></td>
 +
          <td><font color="#d66">30s</font></td>
 +
      </tr>
 +
      <tr>
 +
          <td><font color="#d66">25 cycles</td>
 +
          <td>98C</td>
 +
          <td>15s</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Annealing temp 1</td>
 +
          <td>59.5C</td>
 +
          <td>30s</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Annealing temp 2</td>
 +
          <td>56.3C</td>
 +
          <td>30s</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Annealing temp 3</td>
 +
          <td>53.7C</td>
 +
          <td>30s</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Extension</td>
 +
          <td>72C</td>
 +
          <td>60s</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Final Extension</td>
 +
          <td>72C</td>
 +
          <td>2m</td>
 +
      </tr>
 +
      <tr>
 +
          <td>Hold</td>
 +
          <td>4C</td>
 +
          <td></td>
 +
      </tr>
 
   </p>
 
   </p>
 
   <p>Controls
 
   <p>Controls

Revision as of 16:53, 18 September 2015

Protocols

We built our constructs from pre-made biobrick parts. Our overall conclusion is that 3A assembly is generally inefficient, and an insufficient method for adding small parts (such as a terminator) to a larger construction within pSB1C3. We learned that ratios were extremely important in the process of 3A Assembly, and we made a summary sheet of the equations we used in pre-digest and pre-ligation that accounts for digest dilution and amount needed to ensure results are seen on a gel, not just ligation ratios. We wished we used gibson assembly.


Making Color

Recipes

3A Assembly

Calculations (pdf)