Difference between revisions of "Team:British Columbia/Growing"

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For our probiotic, we chose the betaproteobacteria, <i>Snodgrassella alvi</i>, and the gammaproteobacteria, <i>Gilliamella apicola</i>, both of which are specific to <i>Apis mellifera</i>. By implementing our system in these microaerophiles which are native and unique to the honey bee gut, we are inhibiting other insects from acquiring our engineered, imidacloprid resistant strains. However, due to the small amount of existing literature on <i>G. apicola</i> and <i>S. alvi</i>, our project revolved around discovering methods of culturing the bacteria, inducing competence, and transforming them with a compatible plasmid.
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<h4>Culturing:</h4>
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<p>Due to the novel nature of using <i>G. apicola</i> and <i>S. alvi</i> for the project (as opposed to <i>E. coli</i>), our first step was to determine the optimal method of culturing either bacteria. </p>
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               <strong>PCR of inserts for cloning - Phusion DNA polymerase</strong>  
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               <h4>Culturing: On Plates</h4>  
 
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             <p>To amplify an insert for cloning, using high-fidelity phusion polymerase.</p>
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             <p>The bacterial strains, plated on blood agar (tryptic soy agar supplemented with 5% sheep’s blood) were generously provided by Waldan K. Kwong from Yale University. Initially, we tried a variety of methods of culturing both S. alvi  and G. apicola: LB plates, TSA plates, blood agar plates (5% sheep blood). Following the methods from Kwong et al., we incubated the inoculated agar plates in a microaerophilic chamber flushed with 5% CO2 balanced with N2. After numerous trials of growing the bacteria on different media, we determined G.apicola grew best on TSA plates and S.alvi grew best on blood agar plates. G.apicola plates showed significant growth after two days, whereas S.alvi plates showed significant growth after four days. Due to G. apicola’s faster growth rate and its larger colony diameter, we decided to proceed with the transformations using G. apicola.
<p><a class="btn btn-default" href="https://2015.igem.org/Team:British_Columbia/Notebook/Protocols/PhusionPCR" role="button">View details &raquo;</a></p>
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               <strong>Colony PCR for screening - Taq DNA Polymerase</strong>
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               <h4>Culturing: In Liquid Media</h4>
 
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             <p>Colony PCR is commonly used to screen for the presence of a insert in a plasmid during cloning.</p>
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             <p></p>  
<p><a class="btn btn-default" href="https://2015.igem.org/wiki/index.php?title=Team:British_Columbia/Notebook/Protocols/ColonyPCR" role="button">View details &raquo;</a></p>  
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              <strong>Preparing primers for PCR</strong>
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            <p>Before primers can be used for PCR they need to be resuspended and diluted.</p>
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<p><a class="btn btn-default" href="https://2015.igem.org/Team:British_Columbia/Notebook/Protocols/Primers" role="button">View details &raquo;</a></p>
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Revision as of 21:47, 31 August 2015

UBC iGEM 2015

 

Growing

 

For our probiotic, we chose the betaproteobacteria, Snodgrassella alvi, and the gammaproteobacteria, Gilliamella apicola, both of which are specific to Apis mellifera. By implementing our system in these microaerophiles which are native and unique to the honey bee gut, we are inhibiting other insects from acquiring our engineered, imidacloprid resistant strains. However, due to the small amount of existing literature on G. apicola and S. alvi, our project revolved around discovering methods of culturing the bacteria, inducing competence, and transforming them with a compatible plasmid.

Culturing:

Due to the novel nature of using G. apicola and S. alvi for the project (as opposed to E. coli), our first step was to determine the optimal method of culturing either bacteria.