Difference between revisions of "Team:NYU Shanghai/Protocols"

Line 479: Line 479:
 
     <p>
 
     <p>
 
     <h6><font color="#d66">Building our Construct: from biobrick parts in the kit</font></h6>
 
     <h6><font color="#d66">Building our Construct: from biobrick parts in the kit</font></h6>
     <p>Note: If using construct with araC/pBAD promoter, DO NOT USE SOC MEDIA. Glucose inhibits the uptake of arabinose, and will inhibit promoter induction.
+
     <p>Note: If using construct with pBAD promoter, DO NOT USE SOC MEDIA. Glucose inhibits the uptake of arabinose, and will inhibit promoter induction.
 
     <br>Note: We should have used PCR to amplify linearized backbone.
 
     <br>Note: We should have used PCR to amplify linearized backbone.
 
     <br>Note: Always use gel electrophoresis to check digest results.</p>
 
     <br>Note: Always use gel electrophoresis to check digest results.</p>

Revision as of 16:35, 18 September 2015

Protocols

We built our constructs from pre-made biobrick parts. Our overall conclusion is that 3A assembly is generally inefficient, and an insufficient method for adding small parts (such as a terminator) to a larger construction within pSB1C3. We learned that ratios were extremely important in the process of 3A Assembly, and we made a summary sheet of the equations we used in pre-digest and pre-ligation that accounts for digest dilution and amount needed to ensure results are seen on a gel, not just ligation ratios. We wished we used gibson assembly.


Making Color

Recipes

3A Assembly

Calculations (pdf)