Difference between revisions of "Team:British Columbia/Imidacloprid"

Line 15: Line 15:
 
<p>
 
<p>
 
Imidacloprid is a neonicotinoid commonly used in pesticides around the world [1].  
 
Imidacloprid is a neonicotinoid commonly used in pesticides around the world [1].  
−
Studies have shown that the use of this pesticide has adverse effects on insects since it acts as an neurotoxin by binding and blocking the nicotinergic neuronal pathway [2].  As a result, honey bees become paralyzed and eventually die [3]. Studies have shown that there are three cytochrome P450s (CYPs) capable of modifying imidacloprid into less toxic substances [4-6]. In light of such findings, experiments were conducted in order  to demonstrate that CYP6G1, CYP2D6, and CYP6CM1 can modify imidacloprid into less toxic compounds. In order to test for such modifications, constructs were created to code for: 1) a cytochrome P450 (CYP), 2) a targeting signal sequence, pelB, and 3) an NADPH-cytochrome P450 oxidoreductase (CPR).
+
Studies have shown that the use of this pesticide has adverse effects on insects since it acts as an neurotoxin by binding and blocking the nicotinergic neuronal pathway [2].  As a result, honeybees become paralyzed and eventually die [3]. Studies have shown that there are three cytochrome P450s (CYPs) capable of modifying imidacloprid into less toxic substances [4-6]. In light of such findings, experiments were conducted in order  to demonstrate that CYP6G1, CYP2D6, and CYP6CM1 could modify imidacloprid into less toxic compounds. In order to test for such modifications, constructs were created to code for: 1) a cytochrome P450 (CYP), 2) a targeting signal sequence, pelB, and 3) an NADPH-cytochrome P450 oxidoreductase (CPR).
 
</p>
 
</p>
 
<p>
 
<p>
−
In an attempt to improve CYP expression, pelB was added to the constructs. pelB targets the CYPs to the periplasm of the cell, which is where the CYPs are fully functional [7]. In addition, a P450 oxidoreductase (CPR) is also required to make the CYPs fully functional. AgCPR, a P450 oxidoreductase from Anopheles gambiae, reduces the CYPs by transferring two electrons from NADPH, a reaction necessary for the hydroxylation of imidacloprid by the CYPs [8].  As such, AgCPR was included in the constructs.
+
In an attempt to improve CYP expression, pelB was added to the constructs. pelB targets the CYPs to the periplasm of the cell, where the CYPs are fully functional [7]. In addition, a P450 oxidoreductase (CPR) is also required to make the CYPs fully functional. AgCPR, a P450 oxidoreductase from <i>Anopheles gambiae</i>, reduces the CYPs by transferring two electrons from NADPH, a reaction necessary for the hydroxylation of imidacloprid by the CYPs [8].  As such, AgCPR was included in the constructs.
 
</p>
 
</p>
 
<p>
 
<p>
Line 26: Line 26:
 
<h2>Goals</h2>
 
<h2>Goals</h2>
 
<p>
 
<p>
−
Three cytochrome P450’s, CYP6CM1, CYP6G1 and CYP2D6, have been found to modify imidacloprid (IMI) into less toxic compounds, primarily 4- and 5-hydroxyimidacloprid. Our project goals were to: <br>
+
Three cytochrome P450s, CYP6CM1, CYP6G1 and CYP2D6, have been found to modify imidacloprid (IMI) into less toxic compounds, primarily 4- and 5-hydroxyimidacloprid. Our project goals were to: <br>
−
<LI> Optimize the CYP’s for heterologous expression in <i>E. coli</i> through codon optimization. <br>
+
<LI> Optimize the CYPs for heterologous expression in <i>E. coli</i> through codon optimization. <br>
 
<LI> Create three <i>E. coli</i> strains, each expressing either CYP6CM1, CYP6G1 or CYP2D6 by using a BioBrick compatible expression system (pSCB1C3) to enable <i>E. coli</i> to modify imidacloprid.<br>
 
<LI> Create three <i>E. coli</i> strains, each expressing either CYP6CM1, CYP6G1 or CYP2D6 by using a BioBrick compatible expression system (pSCB1C3) to enable <i>E. coli</i> to modify imidacloprid.<br>
−
<LI> Test for protein expression and characterize in vivo detoxification of imidacloprid in <i>E. coli</i> through SDS-PAGE and High Performance Liquid Chromatography (HPLC), respectively.
+
<LI> Test for protein expression and characterize <i>in vivo</i> detoxification of imidacloprid in <i>E. coli</i> through SDS-PAGE and High Performance Liquid Chromatography (HPLC), respectively.
 
</p>
 
</p>
  
Line 45: Line 45:
 
<h2>Protocol Optimization</h2>
 
<h2>Protocol Optimization</h2>
 
<p>
 
<p>
−
Several aspects of the SDS-PAGE and HPLC protocols could be modified in order to optimize gene expression and imidacloprid degradation. With regards to SDS-PAGE, delta-aminolevulinic acid could be added during the growth phase of the bacteria [6]. The addition of this heme precursor would “lighten” the burden of the cells by allowing for the more efficient production of heme, a cofactor required by the CYPs. In addition, overnight culture times could be extended in order to acquire more cell mass. With regards to HPLC, and in addition to the SDS-PAGE optimizations, several aspects of the HPLC protocol could be modified in order to optimize for gene expression and the degradation of imidacloprid. Such modifications would include adding more or different protease inhibitor mixes, incubating the CYP/AgCPR/imidacloprid/NADPH mixture for longer times, and incubating the mixtures with different concentrations of imidacloprid.
+
Several aspects of the SDS-PAGE and HPLC protocols could be modified in order to optimize gene expression and imidacloprid degradation. For SDS-PAGE, delta-aminolevulinic acid was added during the growth phase of the bacteria [6]. The addition of this heme precursor would “lighten” the burden of the cells by allowing for the more efficient production of heme, a cofactor required by the CYPs. In addition, overnight culture times could be extended in order to acquire more cell mass. With regards to HPLC, and in addition to the SDS-PAGE optimizations, several aspects of the HPLC protocol could be modified in order to optimize for gene expression and the degradation of imidacloprid. Such modifications would include adding more or different protease inhibitor mixes, incubating the CYP/AgCPR/imidacloprid/NADPH mixture for longer times, and incubating the mixtures with different concentrations of imidacloprid.
 
</p>
 
</p>
  

Revision as of 22:47, 18 September 2015

UBC iGEM 2015

 

Degradation of
Imidacloprid

 

Imidacloprid is a neonicotinoid commonly used in pesticides around the world [1]. Studies have shown that the use of this pesticide has adverse effects on insects since it acts as an neurotoxin by binding and blocking the nicotinergic neuronal pathway [2]. As a result, honeybees become paralyzed and eventually die [3]. Studies have shown that there are three cytochrome P450s (CYPs) capable of modifying imidacloprid into less toxic substances [4-6]. In light of such findings, experiments were conducted in order to demonstrate that CYP6G1, CYP2D6, and CYP6CM1 could modify imidacloprid into less toxic compounds. In order to test for such modifications, constructs were created to code for: 1) a cytochrome P450 (CYP), 2) a targeting signal sequence, pelB, and 3) an NADPH-cytochrome P450 oxidoreductase (CPR).

In an attempt to improve CYP expression, pelB was added to the constructs. pelB targets the CYPs to the periplasm of the cell, where the CYPs are fully functional [7]. In addition, a P450 oxidoreductase (CPR) is also required to make the CYPs fully functional. AgCPR, a P450 oxidoreductase from Anopheles gambiae, reduces the CYPs by transferring two electrons from NADPH, a reaction necessary for the hydroxylation of imidacloprid by the CYPs [8]. As such, AgCPR was included in the constructs.

Final constructs were inserted into E. coli and tests were conducted to test the expression of the CYPs in E. coli as well as to test the degradative ability of the CYPs on imidacloprid. Two methods were used in the construction of the final constructs: 1) megaprimer mutagenesis PCR to insert pelB and 2) standard assembly to assemble the CYPs and the AgCPR. Gene expression was tested via SDS-PAGE electrophoresis and imidacloprid metabolism assays were conducted using HPLC.

Goals

Three cytochrome P450s, CYP6CM1, CYP6G1 and CYP2D6, have been found to modify imidacloprid (IMI) into less toxic compounds, primarily 4- and 5-hydroxyimidacloprid. Our project goals were to:

  • Optimize the CYPs for heterologous expression in E. coli through codon optimization.
  • Create three E. coli strains, each expressing either CYP6CM1, CYP6G1 or CYP2D6 by using a BioBrick compatible expression system (pSCB1C3) to enable E. coli to modify imidacloprid.
  • Test for protein expression and characterize in vivo detoxification of imidacloprid in E. coli through SDS-PAGE and High Performance Liquid Chromatography (HPLC), respectively.

    Construct Development

    All constructs were made using restriction digest and ligation methods (standard assembly). pelB was inserted upstream of the CYPs and the AgCPR using megaprimer mutagenesis PCR. Please refer to “Complete Construct Table” for all construct designs. Refer to “Restriction Digest Protocol” for standard assembly methods. Further, refer to the “Mutagenesis PCR” protocol used to insert pelB upstream of the CYPs and the AgCPR.

    Results

    Please refer to “SDS-PAGE Constructs” for SDS-PAGE results and “HPLC Constructs” for HPLC data. Refer to “SDS-PAGE Protocol” and “HPLC Protocol” for the methods used to run gene expression and metabolism assays, respectively.

    Protocol Optimization

    Several aspects of the SDS-PAGE and HPLC protocols could be modified in order to optimize gene expression and imidacloprid degradation. For SDS-PAGE, delta-aminolevulinic acid was added during the growth phase of the bacteria [6]. The addition of this heme precursor would “lighten” the burden of the cells by allowing for the more efficient production of heme, a cofactor required by the CYPs. In addition, overnight culture times could be extended in order to acquire more cell mass. With regards to HPLC, and in addition to the SDS-PAGE optimizations, several aspects of the HPLC protocol could be modified in order to optimize for gene expression and the degradation of imidacloprid. Such modifications would include adding more or different protease inhibitor mixes, incubating the CYP/AgCPR/imidacloprid/NADPH mixture for longer times, and incubating the mixtures with different concentrations of imidacloprid.

    References


    1. Elbert, A., Becker, B., Hartwig, J., Erdelen, C., 1991. Imidacloprid – a new systemic insecticide. Pflanzenschutz-Nachrichten Bayer 44, 113–135
    2. Liu, M.Y., Casida, J.E., 1993. High affinity binding of [3 H] imidacloprid in the insect acetylcholine receptor. Pestic. Biochem. Physiol. 46, 40–46.
    3. Ishaaya, I. (2001). Biochemical Sites of Insecticide Action and Resistance. Springer. ISBN 3540676252.
    4. Joußen, N., Heckel, D.G., Haas, M., Schuphan, I., Schmidt, B., 2008. Metabolism of imidacloprid and DDT by P450 CYP6G1 expressed in cell cultures of Nicotiana tabacum suggests detoxification of these insecticides in Cyp6g1-overexpressing strains of Drosophila melanogaster, leading to resistance. Pest Manag. Sci. 64, 65–73

    5. Schulz-Jander, D.A., Casida, J.E., 2002. Imidacloprid insecticide metabolism: human cytochrome P450 isozymes differ in selectivity for imidazolidine oxidation versus nitroimine reduction. Toxicol. Lett. 132, 65–70.

    6. Karunker, Iris, Evangelia Morou, Dimitra Nikou, Ralf Nauen, Rotem Sertchook, Bradley J. Stevenson, Mark J.I. Paine, Shai Morin, and John Vontas. "Structural Model and Functional Characterization of the Bemisia Tabaci CYP6CM1vQ, a Cytochrome P450 Associated with High Levels of Imidacloprid Resistance." Insect Biochemistry and Molecular Biology 39.10 (2009): 697-706. Elsevier. Web.

    7. Pritchard, Michael P., Lesley McLaughlin, and Thomas Friedberg. "Establishment of Functional Human Cytochrome P450 Monooxygenase Systems in Escherichia Coli." Ed. Ian R. Phillips and Elizabeth A. Shephard. 320 (2006): 19-29. Springer Link. Web.
    8. Nikou, Dimitra, Hilary Ranson, Janet Hemingway. “An adult-specific CYP6 P450 gene is overexpressed in a pyrethroid-resistant strain of the malaria vector, Anopheles gambiae” Gene. 318 (2003): 91-102. Elsevier. Web.