Difference between revisions of "Team:Vilnius-Lithuania/Part Collection"

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        <h3 class="text-heading">Part collection</h3>
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We successfully made a collection of parts, that are the core substances in our project, also they encode the main components of the DNA degradation stage of I-F type CRISPR-Cas system. These parts  are a part of our functional unit (BBa_K1773003 ; BBa_K1773005), which is Cas3 protein and Cascade complex, respectively. Also we made these parts of different expression strengths, by adding different strength RBS sites, so that modulation of protein expression can be obtained, if needed. Another important factor, that these parts have a pLux/cI right promoter, which is regulated by our regulatory unit. The parts are BBa_K1773016 BBa_K1773017 BBa_K1773018 and BBa_K1773022 BBa_K1773023 BBa_K1773024 for Cas3 and Cascade respectively. Lastly, we produced an intermediate part of our regulatory unit (BBa_K1773026), which is also an important contribution to our project, and will be beneficial to other projects, which will use LUX regulatory systems.
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        <th class="col-md-10">Part name</th>
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        <th class="col-md-2">Part number</th>
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        <td style="white-space: nowrap">I-F type CRISPR-Cas Cas3 gene</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773003" style="color:darkgreen">BBa_K1773003</a></td>
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      </tr>
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        <td>I-F type CRISPR-Cas Cascade complex</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773005" style="color:darkgreen">BBa_K1773005</a></td>
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      </tr>
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        <td>IPTG inducible cI repressor cloned with LuxI gene</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773026" style="color:darkgreen">BBa_K1773026</a></td>
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      </tr>
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        <td>pLux/cI right promoter with strong RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773016" style="color:darkgreen">BBa_K1773016</a></td>
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      </tr>
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        <td>pLux/cI right promoter with medium RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773017" style="color:darkgreen">BBa_K1773017</a></td>
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      </tr>
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        <td>pLux/cI right promoter with Weak RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773018" style="color:darkgreen">BBa_K1773018</a></td>
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        <td>Cascade with pLux/cI right promoter and strong RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773022" style="color:darkgreen">BBa_K1773022</a></td>
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        <td>Cascade with pLux/cI right promoter and Medium RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773023" style="color:darkgreen">BBa_K1773023</a></td>
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      </tr>
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        <td>Cascade with pLux/cI right promoter and weak RBS</td>
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        <td><a href="http://parts.igem.org/Part:BBa_K1773024" style="color:darkgreen">BBa_K1773024</a></td>
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Revision as of 10:01, 18 September 2015

Part collection

We successfully made a collection of parts, that are the core substances in our project, also they encode the main components of the DNA degradation stage of I-F type CRISPR-Cas system. These parts are a part of our functional unit (BBa_K1773003 ; BBa_K1773005), which is Cas3 protein and Cascade complex, respectively. Also we made these parts of different expression strengths, by adding different strength RBS sites, so that modulation of protein expression can be obtained, if needed. Another important factor, that these parts have a pLux/cI right promoter, which is regulated by our regulatory unit. The parts are BBa_K1773016 BBa_K1773017 BBa_K1773018 and BBa_K1773022 BBa_K1773023 BBa_K1773024 for Cas3 and Cascade respectively. Lastly, we produced an intermediate part of our regulatory unit (BBa_K1773026), which is also an important contribution to our project, and will be beneficial to other projects, which will use LUX regulatory systems.

Part name Part number
I-F type CRISPR-Cas Cas3 gene BBa_K1773003
I-F type CRISPR-Cas Cascade complex BBa_K1773005
IPTG inducible cI repressor cloned with LuxI gene BBa_K1773026
pLux/cI right promoter with strong RBS BBa_K1773016
pLux/cI right promoter with medium RBS BBa_K1773017
pLux/cI right promoter with Weak RBS BBa_K1773018
Cascade with pLux/cI right promoter and strong RBS BBa_K1773022
Cascade with pLux/cI right promoter and Medium RBS BBa_K1773023
Cascade with pLux/cI right promoter and weak RBS BBa_K1773024