Difference between revisions of "Team:Pasteur Paris/Week 2"
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<p><span class="titrepage">Week 2</span><br/><br/> | <p><span class="titrepage">Week 2</span><br/><br/> | ||
<span class="soustitrepage">06/08 - 06/12</span></p> | <span class="soustitrepage">06/08 - 06/12</span></p> | ||
− | <p></p | + | <p></p><br> |
+ | <center><h3><em>Testing of Biobricks by restriction digest</em></h3></center></br> | ||
+ | |||
<ol> | <ol> | ||
− | <li style="text-align:left">Not I enzymatic | + | <li style="text-align:left">Not I enzymatic digestion of BBa_K808007, BBa_K808010, BBa_K808011, BBa_K808012, BBa_K808013, BBa_K808014, BBa_K936000, BBa_K316003. </li></br> |
− | <li style="text-align:left">Gel migration of | + | <li style="text-align:left">Gel migration of the Miniprep (BBa_K808007, BBa_K808010, BBa_K808011, BBa_K808012, BBa_K808013, BBa_K808014, BBa_K936000, BBa_K316003). </li></br> |
<p align="center"><img src="https://static.igem.org/mediawiki/2015/0/0e/Igem-Pasteur_gel-1-week-2.png" alt="h" width="399" height="303" /></p> | <p align="center"><img src="https://static.igem.org/mediawiki/2015/0/0e/Igem-Pasteur_gel-1-week-2.png" alt="h" width="399" height="303" /></p> | ||
Line 131: | Line 116: | ||
<tr> | <tr> | ||
<td width="153"><p> </p></td> | <td width="153"><p> </p></td> | ||
− | <td width="66"><p align="center">316003</p></td> | + | <td width="66"><p align="center"><strong>316003</strong></p></td> |
− | <td width="66"><p align="center">808007</p></td> | + | <td width="66"><p align="center"><strong>808007</strong></p></td> |
− | <td width="85"><p align="center">808010</p></td> | + | <td width="85"><p align="center"><strong>808010</strong></p></td> |
− | <td width=" | + | <td width="66"><p align="center"><strong>808011</strong></p></td> |
− | <td width="66"><p align="center">808012</p></td> | + | <td width="66"><p align="center"><strong>808012</strong></p></td> |
− | <td width="66"><p align="center">808013</p></td> | + | <td width="66"><p align="center"><strong>808013</strong></p></td> |
− | <td width="66"><p align="center">808014</p></td> | + | <td width="66"><p align="center"><strong>808014</strong></p></td> |
− | <td width="66"><p align="center">936000</p></td> | + | <td width="66"><p align="center"><strong>936000</strong></p></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td width="153"><p align="center">Theoretical | + | <td width="153"><p align="center"><strong>Theoretical size of insert (bp)<strong></p></td> |
<td width="66"><p align="center">1061</p></td> | <td width="66"><p align="center">1061</p></td> | ||
<td width="66"><p align="center">4368</p></td> | <td width="66"><p align="center">4368</p></td> | ||
<td width="85"><p align="center">948</p></td> | <td width="85"><p align="center">948</p></td> | ||
− | <td width=" | + | <td width="66"><p align="center">1011</p></td> |
<td width="66"><p align="center">1242</p></td> | <td width="66"><p align="center">1242</p></td> | ||
<td width="66"><p align="center">465</p></td> | <td width="66"><p align="center">465</p></td> | ||
Line 152: | Line 137: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td width="153"><p align="center"> | + | <td width="153"><p align="center"><strong>Inserts present match theoretical values<strong></p></td> |
<td width="66"><p align="center">no</p></td> | <td width="66"><p align="center">no</p></td> | ||
<td width="66"><p align="center">yes</p></td> | <td width="66"><p align="center">yes</p></td> | ||
<td width="85"><p align="center">C1/C2 yes<br /> | <td width="85"><p align="center">C1/C2 yes<br /> | ||
C3 no</p></td> | C3 no</p></td> | ||
− | <td width=" | + | <td width="66"><p align="center">yes</p></td> |
<td width="66"><p align="center">no</p></td> | <td width="66"><p align="center">no</p></td> | ||
<td width="66"><p align="center">no</p></td> | <td width="66"><p align="center">no</p></td> | ||
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</table> | </table> | ||
− | <p align="center"><strong><u>Figure </u></strong><strong><u>2</u></strong><u>:</u> Table of the | + | <p align="center"><strong><u>Figure </u></strong><strong><u>2</u></strong><u>:</u> Table of the migration gel (cf. figure 1).<u> </u></p> |
<br> | <br> | ||
− | <li style="text-align:left">Storage at -20°C of | + | <li style="text-align:left">Storage at -20°C of BBa_K808007, BBa_K808014, BBa_K808011 (only for C2/C3). </li> |
<p> </p> | <p> </p> | ||
− | <li style="text-align:left">Plasmid purification of | + | <li style="text-align:left">Plasmid purification of BBa_K316003, BBa_K808010, BBa_K808012, BBa_K808013, BBa_K936000. </li> |
<table border="1" cellspacing="0" cellpadding="0" width="764" align="center"> | <table border="1" cellspacing="0" cellpadding="0" width="764" align="center"> | ||
+ | </br> | ||
<tr> | <tr> | ||
− | <td width="71" rowspan="2" valign=" | + | <td width="71" rowspan="2" valign="center"><p><strong>BB</strong></p></td> |
− | <td width="231" colspan="3" valign="top"><p align="center"><strong | + | <td width="231" colspan="3" valign="top"><p align="center"><strong>clone 1</strong></p></td> |
− | <td width="231" colspan="3" valign="top"><p align="center"><strong | + | <td width="231" colspan="3" valign="top"><p align="center"><strong>clone 2</strong></p></td> |
− | <td width="231" colspan="3" valign="top"><p align="center"><strong | + | <td width="231" colspan="3" valign="top"><p align="center"><strong>clone 3</strong></p></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td width="72" valign="top"><p><strong>C (ng/ | + | <td width="72" valign="top"><p><strong>C (ng/µl)</strong></p></td> |
<td width="79" valign="top"><p><strong>260/280</strong></p></td> | <td width="79" valign="top"><p><strong>260/280</strong></p></td> | ||
<td width="79" valign="top"><p><strong>260/230</strong></p></td> | <td width="79" valign="top"><p><strong>260/230</strong></p></td> | ||
− | <td width="72" valign="top"><p><strong>C (ng/ | + | <td width="72" valign="top"><p><strong>C (ng/µl)</strong></p></td> |
<td width="79" valign="top"><p><strong>260/280</strong></p></td> | <td width="79" valign="top"><p><strong>260/280</strong></p></td> | ||
<td width="79" valign="top"><p><strong>260/230</strong></p></td> | <td width="79" valign="top"><p><strong>260/230</strong></p></td> | ||
− | <td width="72" valign="top"><p><strong>C (ng/ | + | <td width="72" valign="top"><p><strong>C (ng/µl)</strong></p></td> |
<td width="79" valign="top"><p><strong>260/280</strong></p></td> | <td width="79" valign="top"><p><strong>260/280</strong></p></td> | ||
<td width="79" valign="top"><p><strong>260/230</strong></p></td> | <td width="79" valign="top"><p><strong>260/230</strong></p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808007</strong></p></td> | <td width="71" valign="top"><p><strong>808007</strong></p></td> | ||
− | <td width="72" valign="top"><p>22. | + | <td width="72" valign="top"><p>22.60</p></td> |
<td width="79" valign="top"><p>1.99</p></td> | <td width="79" valign="top"><p>1.99</p></td> | ||
<td width="79" valign="top"><p>2.04</p></td> | <td width="79" valign="top"><p>2.04</p></td> | ||
− | <td width="72" valign="top"><p>46. | + | <td width="72" valign="top"><p>46.90</p></td> |
<td width="79" valign="top"><p>1.92</p></td> | <td width="79" valign="top"><p>1.92</p></td> | ||
<td width="79" valign="top"><p>2.09</p></td> | <td width="79" valign="top"><p>2.09</p></td> | ||
− | <td width="72" valign="top"><p>32. | + | <td width="72" valign="top"><p>32.30</p></td> |
− | <td width="79" valign="top"><p>1. | + | <td width="79" valign="top"><p>1.90</p></td> |
<td width="79" valign="top"><p>1.79</p></td> | <td width="79" valign="top"><p>1.79</p></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808010</strong></p></td> | <td width="71" valign="top"><p><strong>808010</strong></p></td> | ||
− | <td width="72" valign="top"><p>13. | + | <td width="72" valign="top"><p>13.50</p></td> |
<td width="79" valign="top"><p>1.85</p></td> | <td width="79" valign="top"><p>1.85</p></td> | ||
<td width="79" valign="top"><p>1.39</p></td> | <td width="79" valign="top"><p>1.39</p></td> | ||
− | <td width="72" valign="top"><p>57. | + | <td width="72" valign="top"><p>57.10</p></td> |
<td width="79" valign="top"><p>1.95</p></td> | <td width="79" valign="top"><p>1.95</p></td> | ||
<td width="79" valign="top"><p>2.17</p></td> | <td width="79" valign="top"><p>2.17</p></td> | ||
− | <td width="72" valign="top"><p>31. | + | <td width="72" valign="top"><p>31.40</p></td> |
<td width="79" valign="top"><p>1.86</p></td> | <td width="79" valign="top"><p>1.86</p></td> | ||
<td width="79" valign="top"><p>1.84</p></td> | <td width="79" valign="top"><p>1.84</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808011</strong></p></td> | <td width="71" valign="top"><p><strong>808011</strong></p></td> | ||
− | <td width="72" valign="top"><p>37. | + | <td width="72" valign="top"><p>37.40</p></td> |
<td width="79" valign="top"><p>1.97</p></td> | <td width="79" valign="top"><p>1.97</p></td> | ||
− | <td width="79" valign="top"><p>2</p></td> | + | <td width="79" valign="top"><p>2.00</p></td> |
− | <td width="72" valign="top"><p>61. | + | <td width="72" valign="top"><p>61.20</p></td> |
<td width="79" valign="top"><p>1.62</p></td> | <td width="79" valign="top"><p>1.62</p></td> | ||
<td width="79" valign="top"><p>1.16</p></td> | <td width="79" valign="top"><p>1.16</p></td> | ||
− | <td width="72" valign="top"><p>21</p></td> | + | <td width="72" valign="top"><p>21.00</p></td> |
<td width="79" valign="top"><p>1.93</p></td> | <td width="79" valign="top"><p>1.93</p></td> | ||
<td width="79" valign="top"><p>1.72</p></td> | <td width="79" valign="top"><p>1.72</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808012</strong></p></td> | <td width="71" valign="top"><p><strong>808012</strong></p></td> | ||
− | <td width="72" valign="top"><p>30. | + | <td width="72" valign="top"><p>30.20</p></td> |
<td width="79" valign="top"><p>1.93</p></td> | <td width="79" valign="top"><p>1.93</p></td> | ||
<td width="79" valign="top"><p>1.94</p></td> | <td width="79" valign="top"><p>1.94</p></td> | ||
− | <td width="72" valign="top"><p>54. | + | <td width="72" valign="top"><p>54.90</p></td> |
<td width="79" valign="top"><p>1.91</p></td> | <td width="79" valign="top"><p>1.91</p></td> | ||
<td width="79" valign="top"><p>2.12</p></td> | <td width="79" valign="top"><p>2.12</p></td> | ||
− | <td width="72" valign="top"><p>21. | + | <td width="72" valign="top"><p>21.10</p></td> |
<td width="79" valign="top"><p>1.94</p></td> | <td width="79" valign="top"><p>1.94</p></td> | ||
<td width="79" valign="top"><p>1.81</p></td> | <td width="79" valign="top"><p>1.81</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808013</strong></p></td> | <td width="71" valign="top"><p><strong>808013</strong></p></td> | ||
− | <td width="72" valign="top"><p>11. | + | <td width="72" valign="top"><p>11.50</p></td> |
<td width="79" valign="top"><p>1.91</p></td> | <td width="79" valign="top"><p>1.91</p></td> | ||
<td width="79" valign="top"><p>1.11</p></td> | <td width="79" valign="top"><p>1.11</p></td> | ||
− | <td width="72" valign="top"><p>9. | + | <td width="72" valign="top"><p>9.60</p></td> |
<td width="79" valign="top"><p>1.78</p></td> | <td width="79" valign="top"><p>1.78</p></td> | ||
<td width="79" valign="top"><p>1.42</p></td> | <td width="79" valign="top"><p>1.42</p></td> | ||
− | <td width="72" valign="top"><p>13. | + | <td width="72" valign="top"><p>13.90</p></td> |
<td width="79" valign="top"><p>1.74</p></td> | <td width="79" valign="top"><p>1.74</p></td> | ||
<td width="79" valign="top"><p>1.21</p></td> | <td width="79" valign="top"><p>1.21</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>808014</strong></p></td> | <td width="71" valign="top"><p><strong>808014</strong></p></td> | ||
− | <td width="72" valign="top"><p>33. | + | <td width="72" valign="top"><p>33.90</p></td> |
<td width="79" valign="top"><p>1.89</p></td> | <td width="79" valign="top"><p>1.89</p></td> | ||
<td width="79" valign="top"><p>1.62</p></td> | <td width="79" valign="top"><p>1.62</p></td> | ||
− | <td width="72" valign="top"><p>24. | + | <td width="72" valign="top"><p>24.30</p></td> |
<td width="79" valign="top"><p>1.96</p></td> | <td width="79" valign="top"><p>1.96</p></td> | ||
<td width="79" valign="top"><p>2.14</p></td> | <td width="79" valign="top"><p>2.14</p></td> | ||
− | <td width="72" valign="top"><p>14. | + | <td width="72" valign="top"><p>14.40</p></td> |
<td width="79" valign="top"><p>1.81</p></td> | <td width="79" valign="top"><p>1.81</p></td> | ||
<td width="79" valign="top"><p>1.38</p></td> | <td width="79" valign="top"><p>1.38</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>316003</strong></p></td> | <td width="71" valign="top"><p><strong>316003</strong></p></td> | ||
− | <td width="72" valign="top"><p>13. | + | <td width="72" valign="top"><p>13.60</p></td> |
<td width="79" valign="top"><p>2.04</p></td> | <td width="79" valign="top"><p>2.04</p></td> | ||
<td width="79" valign="top"><p>2.38</p></td> | <td width="79" valign="top"><p>2.38</p></td> | ||
− | <td width="72" valign="top"><p>16. | + | <td width="72" valign="top"><p>16.50</p></td> |
− | <td width="79" valign="top"><p>2. | + | <td width="79" valign="top"><p>2.10</p></td> |
<td width="79" valign="top"><p>2.41</p></td> | <td width="79" valign="top"><p>2.41</p></td> | ||
− | <td width="72" valign="top"><p>18. | + | <td width="72" valign="top"><p>18.80</p></td> |
<td width="79" valign="top"><p>1.94</p></td> | <td width="79" valign="top"><p>1.94</p></td> | ||
<td width="79" valign="top"><p>0.74</p></td> | <td width="79" valign="top"><p>0.74</p></td> | ||
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<tr> | <tr> | ||
<td width="71" valign="top"><p><strong>936000</strong></p></td> | <td width="71" valign="top"><p><strong>936000</strong></p></td> | ||
− | <td width="72" valign="top"><p>18. | + | <td width="72" valign="top"><p>18.20</p></td> |
<td width="79" valign="top"><p>1.98</p></td> | <td width="79" valign="top"><p>1.98</p></td> | ||
<td width="79" valign="top"><p>1.19</p></td> | <td width="79" valign="top"><p>1.19</p></td> | ||
− | <td width="72" valign="top"><p>13. | + | <td width="72" valign="top"><p>13.10</p></td> |
<td width="79" valign="top"><p>1.97</p></td> | <td width="79" valign="top"><p>1.97</p></td> | ||
<td width="79" valign="top"><p>0.93</p></td> | <td width="79" valign="top"><p>0.93</p></td> | ||
− | <td width="72" valign="top"><p>11. | + | <td width="72" valign="top"><p>11.90</p></td> |
<td width="79" valign="top"><p>2.16</p></td> | <td width="79" valign="top"><p>2.16</p></td> | ||
<td width="79" valign="top"><p>1.18</p></td> | <td width="79" valign="top"><p>1.18</p></td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
− | <p><strong><u>Figure 3</u></strong><u>:</u> Plasmid purification for | + | <p><strong><u>Figure 3</u></strong><u>:</u> Plasmid purification for BBa_K808007, BBa_K808010, BBa_K808011, BBa_K808012, BBa_K808013, BBa_K808014, BBa_K316003, BBa_K936000. </p> |
<br> | <br> | ||
− | <li style="text-align:left">Plasmid purification of | + | <li style="text-align:left">Plasmid purification of BBa_K316003, BBa_K808010, BBa_K808012, BBa_K808013, BBa_K936000. </li> |
</ol> | </ol> | ||
<p> </p> | <p> </p> | ||
<p align="center"><img src="https://static.igem.org/mediawiki/2015/9/98/IGEM_Pasteur_gel_2_week_2.png" alt="h" width="448" height="445" /></p> | <p align="center"><img src="https://static.igem.org/mediawiki/2015/9/98/IGEM_Pasteur_gel_2_week_2.png" alt="h" width="448" height="445" /></p> | ||
− | <p align="center"><strong><u>Figure 4</u></strong><u>:</u> Migration gel of | + | <p align="center"><strong><u>Figure 4</u></strong><u>:</u> Migration gel of digestion products.<u> </u></p> |
</td> | </td> | ||
</tr> | </tr> |
Latest revision as of 00:29, 19 September 2015
Week 1Week 2Week 3Week 4Week 5Week 6Week 7Week 8Week 9Week 10Week 11Week 12Week 13Week 14Week 15 |
Week 2 Testing of Biobricks by restriction digest
Figure 1: Verification of the plasmid purification.
Figure 2: Table of the migration gel (cf. figure 1).
Figure 3: Plasmid purification for BBa_K808007, BBa_K808010, BBa_K808011, BBa_K808012, BBa_K808013, BBa_K808014, BBa_K316003, BBa_K936000.
Figure 4: Migration gel of digestion products. |