Introduction

The diffusion processes are slow, and the inertial effects are negligible on micro-scale with low Reynolds number [6,55]. Hence microfluidics became a valuable tool enabling complex control of the cellular microenvironment.

Soft lithography description ^{[ Fikar2015]}.

Soft-lithography

Microfluidic channels were formed using PDMS soft-lithography technology, which has proven biocompatibility and can be readily applied in available laminar flow cabinets (photomask and silicon master fabrication is outsourced). Silicon masters were required for the PDMS molding. PDMS molds were bonded to the glass substrates to form encapsulated microfluidic devices using air plasma technology.

PDMS molding

Two part silicone elastomer Sylgard 184 is used to produce PDMS. The base part is mixed with sufficient amount of curing agent (10:1 ratio) and stirred well in a disposable plastic cup. The mixture is placed in dessicator to remove the air bubbles introduced by the mixing. The Si master is placed in a petri dish and the mixture is poured over. The remaining air bubbles are removed from the PDMS by sharp tip of a needle. The poured PDMS is maintained in perfect horizontal position to assure good planarity, and is cured in an oven, for 2 hours at 80◦C. The PDMS edges are cut off with sharp tool and the PDMS is peeled off the Si master. The PDMS mold is sliced into sections containing individual devices. Inlets and outlets are drilled carefully by biopsy punch of the appropriate diameter at the desired locations of the PDMS replica.

Bonding of PDMS to the glass substrate

Prepared PDMS replicas with imprinted micro-structures are cleaned properly with scotch tape. The PDMS and glass substrate are treated by oxygen plasma for 20 seconds. The oxygen plasma affects the PDMS backbone and forms reactive silanol functional groups (Si-OH) enabling formation of permanent irreversible covalent bond of the PDMS to the glass substrate [70]. In addition, the PDMS treatment with oxygen plasma is ben- eficial as it avoids nonspecific adsorption, decreases cell clogging and turns the PDMS to hydrophilic. The hydrophilicity of PDMS facilitates the future microchannel wetting [45]. Immediately after the oxygen plasma treatment, small droplet of methanol is poured over the glass substrate to avoid instantaneous bonding of the activated PDMS to the glass substrate. The methanol between the glass and the PDMS increases the time necessary for alignment of the PDMS micro-structures above the patterned micro-electrode topologies. The alignment is performed manually under binocular. The glass substrate bonded to PDMS is placed in the oven, for 5 minutes at 80C. The bonded devices were stored in a room temperature. Inlets and outlets were sealed with scotch tape to avoid contamination.

Experimental setup

Microfluidic experiments were conducted on a platform already established by the Georgiev lab. The laboratory is equipped with precise microfluidic syringe system (neMESYS Low Pressure Syringe Pumps), and microscopic station enabling fluorescence imaging and live cell microscopy (Olympus IX83).

Appendix

Personnel

Martin Cienciala - Microfluidic characterisation of the IOD BAND

Vaclav Pelisek - Micro-fabrication

Pavel Fikar - Scientific advisor

References

1. ↑ Lin, C.-H., Choi, a., & Bennett, R. J. (2011). Defining pheromone-receptor signaling in Candida albicans and related asexual Candida species. Molecular Biology of the Cell, 22(24), 4918–4930. doi:10.1091/mbc.E11-09-0749