Team:Czech Republic/Attributions

Attributions

The idea of IOD

Band began...

Team

The team include a mix of complementary expertise. In the end the work was naturally split between the members.

Jan Bejvl

Jan Bejvl assisted with modul 2 experiments, processed data for the Interlab Study and helped with the technical editing of wiki.

Martin Ciencala

Martin Ciencala was responsible for modul 3. He and Veronika Kolejaková designed, assembled and experimentally validated ........... Martin Ciencala also executed microfluidic experiments. He is also co author of Modul 3 wiki page.

Hynek Kasl

Hynek Kasl was responsible for modul 1. He designed and assembled MATa and MATx synthetic loci, reporter plasmids and 3 biobricks, performed validation experiments and assays. He was in charge of mathematical modeling and found, prepared and explained the models used by the CeCe simulator for their implementation. He made the presentation for young engineers and assisted during the Interlab Study experiments. Hynek is also the author of Modul 1 and Modelling wiki pages.

Veronika Kolejáková

Veronika Kolejaková worked in modul 3. She and Martin Cienciala designed, assembled and experimentally validated ........... She is also co-author of the interview with cancer specialist, author of Safety wiki page and co-author of Modul 3 wiki page.

Jiří Louda

Jiří Louda performed search of provided literature for modul 2 and fabricated the microfludic chips.

Václav Pelíšek

Václav Pelíšek extended the CeCe simulator by features crucial for IOD simulations: stochastic reactions, cell-cell communication and agglutination. He did all work on coding wiki design into HTML and CSS, fabricated the microfludic chips, assisted during the Interlab Study experiments and with the lab's maintenance.

Anna Sosnová

Anna Sosnová was responsible for modul 2. She performed cloning, BioBrick construction and validation of the constructed parts. She was also responsible for performing the Interlab Study including construction of devices, measurements and processing of data. She is the author of Interlab Study and Human Practice wiki pages.

Advisors

The advisors kept the work on track and helped answer the tough questions.

Jiří Fatka

Pavel Fikar

Kateřina Pěchotová

Tereza Puchrová

Tereza Puchrová was advisor of modul 1. She helped to answer all question related to yeast mating pheromone pathway, synthetic loci and reporter plasmids design and performance of validation experiments.

Pavel Zach

Instructor

MSc. Daniel Georgiev PhD

is the king of vector graphic, but that is not his most valuable quality. As our leader he keeps the great mood in the lab and his accurate questions leads everyone to the result without any need for explanation.

Doc. Ing. Janeček Eduard, CSc.

External help

Biomedical center

Faculty of Applied Sciences

Chalmers

Team Attributions

Major Attribution

MSc. Daniel Georgiev PhD

is the king of vector graphic, but that is not his most valuable quality. As our leader he keeps the great mood in the lab and his accurate questions leads everyone to the result without any need for explanation.

Module 1

Individuals responsible for building the synthetic haploid strains:

Responsible students

  • Hynek Kasl

Advisors

  • Tereza Puchrová

Module 2

The people behind orthogonal signals:

Responsible students

  • Anna Sosnová was responsible for cloning, BioBrick construction and validation of the constructed parts.
  • Jan Bejvl asisted with experiments.
  • Jiří Louda performed search of provided literature.

Advisors

  • Pavel Zach provided literature and advices regarding chimeric receptors and synthetic pheromones.
  • Kateřina Pěchotová helped with the experimental setups.

Module 3

The formation behind location tags.

Responsible students

  • Martin Cienciala
  • Veronika Kolejaková

Modeling

Responsible students

  • Hynek Kasl is the person in charge of mathematical modeling.

Microfluidics

The people who realized microfludic experiments:

Responsible students

  • Martin Ciencala executed microfluidic experiments.
  • Václav Pelíšek and Jiří Louda fabricated the microfludic chips.

Advisors

  • Pavel Fikar tought students the basics of microfludics and showed them how to use specialized equipment.

Software

The party responsible for improving the CeCe simulator by extensions needed for our project.

Responsible students

  • Václav Pelíšek extended the CeCe simulator by features crucial for IOD simulations: stochastic reactions, cell-cell communication and agglutination.
  • Hynek Kasl found, prepared and explained the models used by the simulator for their implementation.

Advisors

  • Jíří Fatka is the original author of the CeCe simulator. He helped with understanding of the simulator architecture and extensions implementation.

Wiki Page

Those who make this awesome wiki:

Responsible students

  • Václav Pelíšek did all work on coding wiki design into HTML and CSS.

Advisors

  • Jiří Fatka was helpful in solving some complex HTML and CSS problems.

Human Practice

Responsible students

  • Anna Sosnová is coordinator of collaboration with team Chalmers Gothenburg. She is responsible for collecting surveys and author of the interview.
  • Veronika Kolejáková is co-author the interview.
  • Hynek Kasl made the presentation for the Enginners.

Interlab study

Responsible students

  • Anna Sosnová is the responsible for performing the Interlab study including construction of devices, measurements and processing of data.
  • Hynek Kasl and Václav Pelíšek assisted during the experimets.
  • Jan Bejvl assisted with the data processing

Advisors

  • Kateřina Pěchotová taught students how to operate with measurement devices.
  • Pavel Zach supervised the experiments.

Parts

Responsible students

  • Anna Sosnová
  • Jan Bejvl

Advisors

  • Pavel Zach

Lab Support

  • Kateřina Pěchotová is the person responsible for the lab's maintanence.
  • Václav Pelíšek is assisting with the maintanence.