Difference between revisions of "Team:Paris Bettencourt/Software"

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{{Paris_Bettencourt}}
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{{Paris_Bettencourt/header}}
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<html>
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{{Paris_Bettencourt/menu}}
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{{Paris_Bettencourt/modelingBanner}}
  
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<h2>Software</h2>
 
  
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<html>
  
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<div class="highlightBox">
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<h3>Introduction</h3>
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<h4>Note</h4>
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<p>In order to be considered for the <a href="https://2015.igem.org/Judging/Awards#SpecialPrizes">Best Software Tool award</a>, you must fill out this page.</p>
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</div>
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<h3>Files</h3>
  
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<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honour such "nuggets" of computational work.</p>
 
  
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<p>
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<h3>Input</h3>
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If you are working on software as your main project, please join the software track. If you are creating software as an addition to your main project, please apply for this award.
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<h4>Cells input</h4>
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</p>
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<h5>Random initial position</h5>
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<h5>Non random initial position</h5>
  
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<p>
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<h4>Rate constant</h4>
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Here are a few examples from previous teams:
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<h4>Fermentation period</h4>
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</p>
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<h4>Action</h4>
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<h4>Folder name</h4>
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<h3>Output</h3>
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<h4>Raw data</h4>
 
<ul>
 
<ul>
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<li><a href="https://2013.igem.org/Team:TU-Munich/Results/Software">TU Munich 2013</a></li>
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<li>mainTic</li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Software">Heidelberg 2014</a></li>
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<li>mc0</li>
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<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">Aachen 2014</a></li>
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<li>dc0</li>
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<li>pasDistributionTimeEvent</li>
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<li>frameRate</li>
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<li>timeShowPopulation</li>
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<li>simulationTime</li>
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<li>resultFolderName</li>
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<li>muT1</li>
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<li>sigmaT1</li>
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<li>muT2</li>
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<li>sigmaT2</li>
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<li>muT3</li>
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<li>sigmaT3</li>
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<li>k4</li>
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<li>cVitamin</li>
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<li>time</li>
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<li>createFolder</li>
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<li>showPopulationBool</li>
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<li>plotGraph</li>
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<li>input</li>
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<li>cTime1</li>
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<li>cTime2</li>
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<li>cTime3</li>
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<li>counterEvent</li>
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<li>timerShow</li>
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<li>sizeMat</li>
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<li>time1Array</li>
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<li>time2Array</li>
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<li>time3Array</li>
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<li>cell</li>
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<li>sizeMatCell</li>
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<li>nextEvent</li>
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<li>timeNextEvent</li>
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<li>saveTime</li>
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<li>saveNbrMC</li>
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<li>saveNbrDC</li>
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<li>saveNbrVitamin</li>
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<li>folderName</li>
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<li>imgType</li>
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<li>maxMC</li>
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<li>maxDC</li>
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<li>maxVitamin</li>
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<li>timeSpent</li>
 
</ul>
 
</ul>
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<h4>Folder creation</h4>
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<h4>Graphs</h4>
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<h4>Animation</h4>
  
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</div>
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<h3>Examples</h3>
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<h4>Time evolution of mother cells, differentiated cells and vitamin</h4>
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<h5>Graphs</h5>
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<h5>Animation</h5>
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<h4>Vitamin optimization</h4>
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<h4>Deterministic and stochastic vitamin optimization comparison</h4>
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<h3>Programm explanation</h3>
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<h4>Step by step</h4>
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<h4>Parallel computing</h4>
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<h3>Conclusion</h3>
  
 
</html>
 
</html>
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{{Paris_Bettencourt/footer}}

Revision as of 14:42, 24 August 2015


Introduction

Files

Input

Cells input

Random initial position
Non random initial position

Rate constant

Fermentation period

Action

Folder name

Output

Raw data

  • mainTic
  • mc0
  • dc0
  • pasDistributionTimeEvent
  • frameRate
  • timeShowPopulation
  • simulationTime
  • resultFolderName
  • muT1
  • sigmaT1
  • muT2
  • sigmaT2
  • muT3
  • sigmaT3
  • k4
  • cVitamin
  • time
  • createFolder
  • showPopulationBool
  • plotGraph
  • input
  • cTime1
  • cTime2
  • cTime3
  • counterEvent
  • timerShow
  • sizeMat
  • time1Array
  • time2Array
  • time3Array
  • cell
  • sizeMatCell
  • nextEvent
  • timeNextEvent
  • saveTime
  • saveNbrMC
  • saveNbrDC
  • saveNbrVitamin
  • folderName
  • imgType
  • maxMC
  • maxDC
  • maxVitamin
  • timeSpent

Folder creation

Graphs

Animation

Examples

Time evolution of mother cells, differentiated cells and vitamin

Graphs
Animation

Vitamin optimization

Deterministic and stochastic vitamin optimization comparison

Programm explanation

Step by step

Parallel computing

Conclusion