Difference between revisions of "Team:Paris Bettencourt/Bibliography"

 
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<h2>Bibliography</h2>
 
<h2>Bibliography</h2>
  
 +
<h3>Design</h3>
 
<ul>
 
<ul>
−
<li>Li, Q., Sun, Z., Li, J. & Zhang, Y. Enhancing beta-carotene production in Saccharomyces cerevisiae by metabolic engineering. FEMS Microbiology Letters 345, 94-101 (2013).</li>
+
<li>International Institute for Population Sciences (IIPS) and Macro International. 2007. National Family Health Survey (NFHS-3), 2005-06, India: Key Findings. Mumbai: IIPS.</li>
−
<li>Beekwilder, J. et al. Polycistronic expression of a ß-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to ß-ionone production. Journal of Biotechnology (2014).</li>
+
<li>Global Nutrition Report 2014: Actions and accountability to accelerate the world’s progress on nutrition
 +
International Food Policy Research Institute (2014)</li>
 +
<li>An Assessment of Vitamin Supplements in the Indian Market Preeta K. Chugh* and Y. Lhamo</li>
 +
<li>"Golden Rice in India: Is it necessary? What are impediments to adoption?" Ryan Lenz | May 25, 2015 | Genetic Literacy Project</li>
 +
<li>"Public knowledge, use and attitude toward multivitamin supplementation: A cross-sectional study among general public", Kavita Sekhri and Kirandeep Kaur 2014</li>
 +
<li>"Potential impact and cost-effectiveness of Golden Rice", Alexander J. Stein, H.P.S. Sachdev & Matin Qaim, 2006</li>
 
</ul>
 
</ul>
 +
<br>
  
  
 +
<h3>Vitamin A (retinol) project</h3>
 +
<ul>
 +
<li>Li, Q., Sun, Z., Li, J. & Zhang, Y. Enhancing beta-carotene production in Saccharomyces cerevisiae by metabolic engineering. <i>FEMS Microbiology Letters</i> <b>345</b>, 94-101 (2013).</li>
 +
<li>Beekwilder, J. et al. Polycistronic expression of a ß-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to ß-ionone production. <i>Journal of Biotechnology</i> (2014).</li>
 +
<li>Voth, W.P., Richards, J.D., Shaw, J.M. & Stillman, D.J. Yeast vectors for integration at the HO locus. <i>Nucleic acids research</i> <b>29</b>, E59-E59 (2001).</li>
 +
</ul>
 +
<br>
 +
 +
 +
<h3>Vitamin B2 (riboflavin) project:</h3>
 +
<ul>
 +
<li>Indian Council of Medical Research 2009 report</li>
 +
<li>'Micronutrient deficiency and cognitive and physical performance in Indian children', S Swaminathan, European J. Clin. Nut., 2013</li>
 +
<li>'Less Recognised Micronutrient Deficiencies In India', Mahtab S. Bamji, Bulletin of Nutrition Foundation of India, 1993</li>
 +
<li>'Three biotechnical processes using <i>Ashbya gossypii</i>, <i>Candida albicans</i> or <i> Bacillus subtilis</i> compete with chemical riboflavin production', K.-P Stahmann & al, Appl Micr. Biotech., 2000</li>
 +
<li>'Diversity and functional characterization of microflora isolated from traditional fermented food idli', Chinnashanmugam Saravanan, J Food Sci Technol, 2015</li>
 +
<li>'Applied Microbiology',  Sanjai Saxena</li>
 +
<li>'Genetic engineering of <i>Bacillus subtilis</i> for the commercial production of riboflavin', John B Perkins, J. Ind. Microbiol. Biotechnol. 22, 8-18, 1999</li>
 +
<li>'Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation', A. G. Vitreschak, Nuc. Acid Res., 2002</li>
 +
<li>'Tuning constitutive recombinant gene expression in <i>Lactobacillus plantarum</i>', Tauer et al., Microbial Cell Factories 2014</li>
 +
<li>'Kinetic modeling of riboflavin biosynthesis in <i>Bacillus subtilis</i> under production conditions', M. Birkenmeier, Biotech. Lett., 2014</li>
 +
<li>'A synthetic promoter library for constitutive gene expression in <i>Lactobacillus plantarum</i>',I. Rud, Microbiology, 2006</li>
 +
<li>'Direct cloning in <i>Lactobacillus plantarum</i>: Electroporation with non-methylated plasmid DNA enhances transformation efficiency and makes shuttle vectors obsolete', Katharina SpathSpath et al. Microbial Cell Factories 2012, 11:141</li>
 +
<li>'Repetitive, Marker-Free, Site-Specific Integration as a Novel Tool for Multiple Chromosomal Integration of DNA', Kia Vest Petersen et al.,  Appl. and Environ. Microbiology, 2013.</li>
 +
<li>'Bacterial vitamin B2, B11 and B12 overproduction: An overview', Catherine M. Burgess et al., Int J Food Microbiology, 2009. </li>
 +
</ul>
 +
 +
<br>
 +
<h3>Vitamin B12 (cobalamin) project:</h3>
 +
<ul>
 +
<li>"Vitamins in the prevention of human diseases", Wolfgang Herrmann</li>
 +
<li>"Vitamin B12 deficiency", Alesia Hunt, BMJ, 2014</li>
 +
<li>"The total synthesis of vitamin B12", R. B. WOODWARD</li>
 +
<li><a href="http://www.synarchive.com/syn/71">SynArchive.com</a></li>
 +
<li>"Dietary factors that affect biological availability of trace elements", O'Dell 1972, Ann N Y Acad Sci.</li>
 +
<li>"Reduction of phytic acid and enhancement of bioavailable micronutrients in food grains". Gupta RK. J Food Sci Technol. 2015 </li>
 +
</ul>
 +
 +
 +
<h3>Continuity</h3>
 +
<ul>
 +
<li>"Short motif sequences determine the targets of the prokaryotic CRISPR defence system", Mojica et al., 2009,  Microbiology</li>
 +
<li>"RNA-guided editing of bacterial genomes using CRISPR-Cas systems", Jiang, Bikard et al., 2013, Nat Biotechnol</li>
 +
<li>"Cre recombinase: the universal reagent for genome tailoring", Nagy et al., 2000, Genesis 26 (2)</li>
 +
<li>"A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination", Missirlis et al., 2006, BMC Genomics</li>
 +
<li>"One-step cloning and chromosomal integration of DNA", Saint-Pierre et al., 2013, ACS synthetic biology</li>
 +
<li>"Dynamics of chromosome segregation in <em>Escherichia coli</em>", Nielsen et al., 2006, BioCentrum, Ph.D thesis.</li>
 +
<li>"Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system", Bikard et al., 2013, Nucleic Acids Res</li>
 +
<li>"RNA-guided gene activation by CRISPR-Cas9–based transcription factors", Perez-Pinera et al., 2013, Nature Methods</li>
 +
</ul>
 +
 +
<h3>Modelling</h3>
 +
<ul>
 +
<li>"A general method for numerically simulating the stochastic time evolution of coupled chemical reactions", Gillespie, Journal of Computational Physics (1976).</li>
 +
<li>"Exact Stochastic Simulation Of Coupled Chemical-Reactions", Gillespie, Journal of Physical Chemistry (1977).</li>
 +
<li>"A rigorous derivation of the chemical master equation", Gillespie, Physica A: Statistical Mechanics and its Applications (1992).</li>
 +
<li>"The slow-scale stochastic simulation algorithm", Gillespie, The Journal of Chemical Physics (2005).</li>
 +
<li>"Perspective: Stochastic algorithms for chemical kinetics", Gillespie, The Journal of Chemical Physics, (2013).</li>
 +
</ul>
 
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</html>
  
 
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Latest revision as of 08:24, 20 November 2015

Bibliography

Design

  • International Institute for Population Sciences (IIPS) and Macro International. 2007. National Family Health Survey (NFHS-3), 2005-06, India: Key Findings. Mumbai: IIPS.
  • Global Nutrition Report 2014: Actions and accountability to accelerate the world’s progress on nutrition International Food Policy Research Institute (2014)
  • An Assessment of Vitamin Supplements in the Indian Market Preeta K. Chugh* and Y. Lhamo
  • "Golden Rice in India: Is it necessary? What are impediments to adoption?" Ryan Lenz | May 25, 2015 | Genetic Literacy Project
  • "Public knowledge, use and attitude toward multivitamin supplementation: A cross-sectional study among general public", Kavita Sekhri and Kirandeep Kaur 2014
  • "Potential impact and cost-effectiveness of Golden Rice", Alexander J. Stein, H.P.S. Sachdev & Matin Qaim, 2006

Vitamin A (retinol) project

  • Li, Q., Sun, Z., Li, J. & Zhang, Y. Enhancing beta-carotene production in Saccharomyces cerevisiae by metabolic engineering. FEMS Microbiology Letters 345, 94-101 (2013).
  • Beekwilder, J. et al. Polycistronic expression of a ß-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to ß-ionone production. Journal of Biotechnology (2014).
  • Voth, W.P., Richards, J.D., Shaw, J.M. & Stillman, D.J. Yeast vectors for integration at the HO locus. Nucleic acids research 29, E59-E59 (2001).

Vitamin B2 (riboflavin) project:

  • Indian Council of Medical Research 2009 report
  • 'Micronutrient deficiency and cognitive and physical performance in Indian children', S Swaminathan, European J. Clin. Nut., 2013
  • 'Less Recognised Micronutrient Deficiencies In India', Mahtab S. Bamji, Bulletin of Nutrition Foundation of India, 1993
  • 'Three biotechnical processes using Ashbya gossypii, Candida albicans or Bacillus subtilis compete with chemical riboflavin production', K.-P Stahmann & al, Appl Micr. Biotech., 2000
  • 'Diversity and functional characterization of microflora isolated from traditional fermented food idli', Chinnashanmugam Saravanan, J Food Sci Technol, 2015
  • 'Applied Microbiology', Sanjai Saxena
  • 'Genetic engineering of Bacillus subtilis for the commercial production of riboflavin', John B Perkins, J. Ind. Microbiol. Biotechnol. 22, 8-18, 1999
  • 'Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation', A. G. Vitreschak, Nuc. Acid Res., 2002
  • 'Tuning constitutive recombinant gene expression in Lactobacillus plantarum', Tauer et al., Microbial Cell Factories 2014
  • 'Kinetic modeling of riboflavin biosynthesis in Bacillus subtilis under production conditions', M. Birkenmeier, Biotech. Lett., 2014
  • 'A synthetic promoter library for constitutive gene expression in Lactobacillus plantarum',I. Rud, Microbiology, 2006
  • 'Direct cloning in Lactobacillus plantarum: Electroporation with non-methylated plasmid DNA enhances transformation efficiency and makes shuttle vectors obsolete', Katharina SpathSpath et al. Microbial Cell Factories 2012, 11:141
  • 'Repetitive, Marker-Free, Site-Specific Integration as a Novel Tool for Multiple Chromosomal Integration of DNA', Kia Vest Petersen et al., Appl. and Environ. Microbiology, 2013.
  • 'Bacterial vitamin B2, B11 and B12 overproduction: An overview', Catherine M. Burgess et al., Int J Food Microbiology, 2009.

Vitamin B12 (cobalamin) project:

  • "Vitamins in the prevention of human diseases", Wolfgang Herrmann
  • "Vitamin B12 deficiency", Alesia Hunt, BMJ, 2014
  • "The total synthesis of vitamin B12", R. B. WOODWARD
  • SynArchive.com
  • "Dietary factors that affect biological availability of trace elements", O'Dell 1972, Ann N Y Acad Sci.
  • "Reduction of phytic acid and enhancement of bioavailable micronutrients in food grains". Gupta RK. J Food Sci Technol. 2015

Continuity

  • "Short motif sequences determine the targets of the prokaryotic CRISPR defence system", Mojica et al., 2009, Microbiology
  • "RNA-guided editing of bacterial genomes using CRISPR-Cas systems", Jiang, Bikard et al., 2013, Nat Biotechnol
  • "Cre recombinase: the universal reagent for genome tailoring", Nagy et al., 2000, Genesis 26 (2)
  • "A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination", Missirlis et al., 2006, BMC Genomics
  • "One-step cloning and chromosomal integration of DNA", Saint-Pierre et al., 2013, ACS synthetic biology
  • "Dynamics of chromosome segregation in Escherichia coli", Nielsen et al., 2006, BioCentrum, Ph.D thesis.
  • "Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system", Bikard et al., 2013, Nucleic Acids Res
  • "RNA-guided gene activation by CRISPR-Cas9–based transcription factors", Perez-Pinera et al., 2013, Nature Methods

Modelling

  • "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions", Gillespie, Journal of Computational Physics (1976).
  • "Exact Stochastic Simulation Of Coupled Chemical-Reactions", Gillespie, Journal of Physical Chemistry (1977).
  • "A rigorous derivation of the chemical master equation", Gillespie, Physica A: Statistical Mechanics and its Applications (1992).
  • "The slow-scale stochastic simulation algorithm", Gillespie, The Journal of Chemical Physics (2005).
  • "Perspective: Stochastic algorithms for chemical kinetics", Gillespie, The Journal of Chemical Physics, (2013).